rab12 (rab12)


Basic Information

Item Value
gene id rab12
gene name rab12
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 16437581 ~ 16446542 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815942.1
AATGACGTCATGAGGGCTATGGTCTCTAATGGCTGAATAACAACAACTGTCGGCGAGTGACAAACTTTCACAAACTTCTACTGAGACGAAAGAAAGTTGGAAATAGGAAATTGTTTCGACACTATACGATTTTAGGCGCgtttgtctgtctttcttgTAATTACAAATGTGGAATTACTGATGGATTCGAGATATGACATACCACGGAGGGCCGCCGGTGGTGGCGGGGGCTCAGCGAACTCTTCCCCCGCTCTGGGGGCTCAGTCGCGCCGCAGGAAGATGCCTCCTAGACCCGCTGATTTTAAACTTCAAATTATCATTATTGGCTCCCGTGGTGTTGGTAAAACGAGCATTATGGAGAGATTTACCGACGACACTTTCTGCGAAGCTTGCAAGTCGACTGTAGGAGTTGACTTCAAAATCAAGACAGTGGAGCTGAGAGGGAAGAAGATCAGACTACAGATATGGGACACTGCTGGCCAGGAGAGGTTTAACAGCATCACATCAGCCTACTACAGAGGCGCCAAGGGAATAGTGCTTGTGTACGATATCACAAAGCAGGAGACCTTTGACGACCTGCCCAAATGGATGAAAATGATAGACAAGTACGCCTCAGAGGAAGCAGAGCTTCTCCTGGTTGGGAACAAGCTGGATTGTGAAACTGATCGTATCATCTCCAGacagcagggagagaggTTTTCCTCTCGAATAAGTGGAATGCGCTTCTGCGAAGCTAGTGCCAAGGATAATTTCAATGTCGACGAGATCTTCCTGAAGCTTGTGGATGACATCCTTAGCAAGATGCCTCTGGAAGTTCCTAACACAGAGTTTTCCAACAGTGTCCTGTCTCTGCAGCCTGAACCGGAAGTGCCTCCAGAGTTGCCGCCTCCCCGCATGCGCTGTTGCTGAGAGTCCGAATGGTCCCCCatcctacacacacagacacacacagacacacacagacacacacagtcacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgcacatgcaggCTACCTATCTGGCCACCAGGGGGCAGCAAACCGCAGCAGTTTGGAATTATTGACTGCTGATGTAAGATGCATGGACTCTCTCAACAACTAGTATTATCTTCCCCGGTTTCTTCTCCTGTTTCGTAGCTGTACACTATGACATGTACCACACTAACACTTAGGCCAGGTTAATCACAACTTCCTACCACCCCTTCTGTCTAAACTTGACCCAGACTACCTCATTCCTCGGACCGTTAGGCTAGCTGTGCCCTGCAGGTGCCTTCGAGGTAGAGAGCCCTCTGGTAGCAGTTGCACATTTTACTAGGAGGGTGATTTATTGAGGGCCATACAGCttcctgttttcttttaaagaatattcatcacacatactgtacactaaGTTTGACATTGTTGCCCCAACGGTCTGGTATCTCTGCATCATCTAGCTTACAGAAAAGGGATAACTTTATCTTACGTCTCTTCTTCTTAGTTTAAATTCTGGATCTAGGTACAGTAGTTTTATATTCTTATTAATAGGTATTATTACCTAAGTGACGAGTTGACTTGAGGTAAACAAAAGCACATAATGTAAATATGGTGTGTTGCTGTAATGACTGGACAAAGTGCAGATATTTGTGGCCAGCAGTAGGTGGTTGTGTGGTGGTGGATCATATCAGTTTGTATTCCTTTGCCTTAAAGTGTTAAAGTGGCTGGCACGGCTCATTTCACTTTTGTATAAATTGTAATGTTTTGCACTACAATCCATCTTACCTAGTTAAGCTTACATGCAGAAGTACACGACTTGTAGTTTAGTAAAGATCAATGTTGCCTCGGTAGTGGCCGCTTTAAAATTCCTCCACGGCCTGTTAAAGTGGGATGGAGATGCAATGAGAGATGGATAATGTAGTCTTTGAGGGATTGGTGTTTTTACAGGGGCATTCTCCATGTGTGTTACTGGCTTTTTAAAGGGAGTAAAGAGAGTAAGAAGCTAGTAGACGCACATGGTTTACgcctttgttttggttttgttacTAATATgcaaaatgtttagtttttttctctgAATTCAGATACAGCTTAAAGAAGAATGTTTGAGTCTCCTTTTTGGGGGGAAAAGTGCAGGAAGGTTTGTTTAGTATTTGAAAGACTTGGGAAACTTTGATCCCCTCATATCTACTCATTTTGACAGGCTGTTATTGCAGATTTGAGTCGAGTTTCATAACAAATTGATAAAGCAACGTCTTCATATAAAATCCTGCTTGTAGGGGACGTTTGTGTTTTTAAGAGGAGGTCACAAGGTTTTATTTATGATTCGGCAGTTTGTTACAGACAAGTATGGGTGTATCCCATTACTTGtgcatttttaaaaacactagGTTATGCATGTTAAGCCCTCCTGTGTTCATagatattaataaacatttaatactTCCGTCTTTTTTTGTTGAATGCAATATTGTAGCACtgtgagtgtttctgttttgtttttacgtATTGAAGTAACAGCCCCAGTCTGAGGGTGAGGAAGGACGAGCCCATTCAAAGGACCTGATCTAAAATGACCTAAACTGACTTGCTATTGGTTAATTAGATTTTTGGTTGAATTTGTATGTTAAAGTCAAGCTTCTGTGGACTTAAAGTGGCACATGATGTATTATAACAAATTAATAGTTTCataccaaaacaaaaaactgagaACTATCACTGACATCCAAGCACATCTTGAGAAAAGATTATTAGCCAGCAAACAACCATACAAATGATCTGCAGCTTTGCAATTTTATCACACACAAACTTCTTTTCATATTGTTTTGTGGAATGCATCCTTTCATTTGTCCCTCTTTGACTTTTAGCATTTGGCACTAACCCTGTGGTCTTTGTTATACTAGCCAAGCCTTATACTACTTAGtgttttaaatataaattttaAGAAATGCTTTTATTTGAAATGTGTATCCTTTAAGATGGAAGACTGTACTTAGTATTAAACCTGTTATACGTCTTGGAAAAGTTTTGGCATGTTGAAAGCAGATTTGTGGTATTTATAACTTGTGGCATTCTTAAACTAATGAAATGCAATTAAAGATATCTATATTTATTACCA

Function

symbol description
rab12 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; protein localization to plasma membrane; and secretion by cell. Predicted to act upstream of or within Rab protein signal transduction. Predicted to be active in Golgi apparatus; cytoplasmic vesicle; and plasma membrane. Is expressed in hindbrain; neural crest; and pharyngeal arch. Orthologous to human RAB12 (RAB12, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-12

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07907 RAB12; Ras-related protein Rab-12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815942.1 True 3148 mRNA 0.41 6 16437581 16446542

Neighbor

gene id symbol gene type direction distance location
LOC120568416 piezo2 coding upstream 8185 16344648 ~ 16429396 (+)
LOC120568300 gnal,LOC106520735 coding upstream 123780 16252963 ~ 16313801 (+)
pak1ip1 pak1ip1 coding upstream 211489 16222043 ~ 16226092 (+)
zfyve9a NA coding upstream 256727 16151205 ~ 16180854 (+)
LOC120569020 btf3l4,LOC100695932 coding upstream 288811 16144107 ~ 16148770 (+)
ndufv2 ndufv2 coding downstream 107203 16553745 ~ 16560428 (+)
ankrd12 ankrd12,LOC102778611 coding downstream 115654 16562196 ~ 16609463 (+)
twsg1a twsg1 coding downstream 167032 16613574 ~ 16628872 (+)
ralbp1 ralbp1,LOC102778314 coding downstream 183138 16629680 ~ 16639812 (+)
rab31 rab31,LOC108232866,LOC107383545 coding downstream 194272 16640814 ~ 16649143 (+)
G115223 NA non-coding upstream 5926 16430161 ~ 16431655 (+)
G115208 NA non-coding upstream 59062 16289237 ~ 16378519 (+)
G115207 NA non-coding upstream 168752 16262657 ~ 16268829 (+)
G115136 NA non-coding upstream 187934 16242987 ~ 16249647 (+)
G115128 NA non-coding upstream 205105 16231698 ~ 16232476 (+)
G115295 NA non-coding downstream 160161 16606703 ~ 16608542 (+)
G115350 LOC104967252 non-coding downstream 313893 16760435 ~ 16821676 (+)
G115404 NA non-coding downstream 711086 17157628 ~ 17158200 (+)
G115437 LOC101466820,LOC102797643,LOC103353954,LOC100700019 non-coding downstream 722031 17168573 ~ 17169818 (+)
G115442 LOC103353955 non-coding downstream 736610 17183152 ~ 17186653 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 209030 16226307 ~ 16228551 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other upstream 516050 15865586 ~ 15921531 (+)
st6galnac3 st6galnac3 other upstream 594487 15764683 ~ 15843094 (+)
slc35a3b LOC103357859,LOC104957008,LOC101481522,LOC102792347 other upstream 869087 15554471 ~ 15568494 (+)
zgc:153115 klf13,LOC104948390,LOC103358333,LOC101073550,LOC105030379,LOC106568757,LOC107752329 other upstream 908812 15520782 ~ 15528769 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other downstream 163834 16610376 ~ 16612206 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other downstream 959955 17406497 ~ 17483553 (+)
LOC120567767 NA other downstream 1580738 18027280 ~ 18029895 (+)
G115729 NA other downstream 1858607 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 2120091 18566633 ~ 18602263 (+)

Expression


Co-expression Network