LOC120568430 (LOC103373937,LOC105937883,LOC100694151)


Basic Information

Item Value
gene id LOC120568430
gene name LOC103373937,LOC105937883,LOC100694151
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32075076 ~ 32115947 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815958.1
TTGTACCTGGGCGTGGTGCTGGCAGCCGTGGTCATCATCACCGGTTGTTTCTCCTACTTCCAAGAGGCCAAGAGCTCCCGAATCATGGACTCCTTCAAGAAAATGGTGCCACAGAAAGCGTTGGTGATCCGGGAGGGGGAGAAGATGCATATCAATGCTGAGCTTGTGGTGCAGGGAGATCTGGTGGAGATCAAAGGGGGAGACCGCATCCCAGCTGACCTTCGAGTGGTCTCCTCCAGCGGGTGCAAgGTGGACAACTCGTCTCTGACGGGAGAATCGGAGCCTCAGACACGCTCCCCGGAGTTCACGCACGACAATCCTCTGGAGACCCGCAACATCTGTTTCTTTTCCACCAACTGTGTCGAGGGAACGGCCCATGGCATCGTGATTGGCACCGGTGACCGAACAGTGATGGGTCGCATCGCCACGCTGGCGTCAGAGCTGGAAGTCCGCCGCACGCCCATCAACATAGAGATCGAACATTTCATCCACCTCATCACGGGCGTGGCCGTCTTCCTGGGCGTGTCCTTCTTCATCCTGTCAATCATCCTGGGCTACACCTGGCTGGAGGCCGTCATCTTCCTCATTGGCATCATCGTGGCCAACGTGCCCGAGGGACTGCTGGCAACTGTCACTGTGTGTCTGACTCTCACTGCCAAGCGAATGGCCAAGAAGAACTGTCTGGTGAAGAACCTGGAGGCCGTAGAAACTCTGGGCTCCACCTCCACCATCTGCTCCGACAAGACAGGCACGCTGACCCAGAACCGCATGACCGTGGCCCACATGTGGTTCGACAACCAGATCCACGAAGCGGACACCACAGAGGACCAGACTgGTTTTGGTTTTGACAAGACCTCTGCTACTTGGACTTCTCTGTCTCGTGTGGCTGGCCTGTGCAACAGAGCTGATTTCAAAGGCGGACAGGAGGAATTTCCCATCCTGATGAGGGAGACAGCGGGGGATGCATCAGAATCAGCTCTGTTGAAATGCATCGAGCTGTGCTGTGGGAGTGTTCGGGAAATGAGAGCTAGAAATCTCAAAGTGGCAGAGATCCCCTTCAACTCCACCAACAAATACCAGCTCTCTGTCCATGAAGTGGAGGACAATCCCTCTGGTCATATTCTGGTCATGAAGGGAGCGCCGGAGAGAATCTTGGAGAGGTGCAGTAGGATTATGATCCACGGCCAGGAGCTGCCACTTGATGAAACCTGGAGAGAGGCTTTCCAGAATGCCTACATGGAGCTGGGAGGACTGGGAGAGAGAGTGCTAGGCTTCTGCCACACAAATCTGTCTTCCACCCAGTTCCCTCGAGGATTCAACTTCGACAGCGAAGAAACAAACTTCCCCATCGAGCAGCTCTGCTTCCTGGGTCTCATCTCCATGATTGATCCGCCGCGTGCCGCTGTGCCTGACGCAGTGGGTAAATGCCGCTCTGCCGGTATCAAGGTGATCATGGTGACAGGGGACCACCCAATCACGGCCAAAGCCATTGCTAAAGGTGTGGGCATCATCTCCGAGGGCAACGAGACAGTTGATGACATCGCCGAGAGACTCAATATCCCTTTGAGCCAAGTCAaccccagGGATGCCAAGGCTTGCGTGGTGCACGGCGCAGACCTAAAGGACATGAGCCGCGAGTACCTGGACGACCTGCTGAGGAACCACACTGAGATAGTGTTTGCTCGCACCTCTCCACAGCAGAAGCTCATCATAGTGGAGGGCTGCCAGAGACAGGGGGCGATCGTGGCCGTGACAGGCGACGGCGTGAATGACTCCCCGGCCTTAAAGAAAGCCGACATCGGCGTTGCCATGGGGATCGCCGGCTCCGATGTGTCCAAGCAGGCAGCTGACATGATCCTGCTGGACGACAACTTTGCCTCCATCGTCACCGGAGTGGAGGAGGGTCGTCTCATCTTTGACAACCTGAAGAAGTCCATTGCATACACGCTGACCAGTAACATCCCAGAGATCTCgcccttcctcctcttcatctgtGCTAGTGTTCCTCTTCCGCTGGGAACTGTCACCATCCTCTGCATCGACCTGGGCACTGACATGGTTCCGGCCATCTCATTGGCTTATGAGACAGCTGAGAGTGACATCATGAAACGCCAACCAAGGAATCCCAAAACAGACAAGCTGGTCAATGAACGCCTCATCAGCATGGCATACGGGCAGATAGGGATGATCCAGGCTCTTGCTGGTTTTTTCACCTATTTTGTGATTTTGGCTGAGAACGGCTTCCTCCCGAAGAACCTTGTGGGCATCCGCATCAGGTGGGACGACCGCGAAGTAAATGATGTGGAGGACAGCTATGGGCAGGAGTGGACCTATGAGCAGAGGAAGATCATTGAATTCACCTGCCACACCTCCTTCTTCATCAGCATCGTTGTCGTGCAGTGGGCTGATGTTATCATCTGCAAGACCAGGAGGAACTCCCTCTTTCAGCAGGGCATGAAGAACAGGATCCTGATCTTTGGTCTGTTTGTTGAGACTGCTCTGGCTGCCTTCCTCTCCTACTGCCCTGGAATGGACATTGCCCTGCGCATGTACCCCCTAAAgCCCCTGTGGTGGTTCTGTGCCTTCCCATACAGTCTTCTCATCTTCATTTATGATGAGGTCCGTAAATTAATTCTGAGGAGGAGCCCCGGAGGTTGGGTGGAGAAGGAGACATATTATTaatattcagaaaataAAACATTTCCAGCAAAACAATGGTAATGTATACCTGTGTGCCTTATATAAACTGTTCCCAAAGTGACATATCATGGCCTGCAGGCTCTAAAGGAATACCAAAGTCGTTCATCGTGTGTAATGtaccaaataaaaatgtattccaaAATA

Function

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-2

GO:

id name namespace
GO:0010084 specification of animal organ axis polarity biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0051480 regulation of cytosolic calcium ion concentration biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0001947 heart looping biological_process
GO:0042044 fluid transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01531 mgtA, mgtB; P-type Mg2+ transporter

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815958.1 True 2844 mRNA 0.54 21 32075076 32115947

Neighbor

gene id symbol gene type direction distance location
mpz mpz,LOC102776110 coding upstream 23641 32031652 ~ 32051435 (+)
lig1 lig1,LOC102777267 coding upstream 58724 31942203 ~ 32016352 (+)
LOC120568893 LOC100705068 coding upstream 135598 31929145 ~ 31939478 (+)
eif3f eif3f coding upstream 209841 31860730 ~ 31865235 (+)
LOC120568980 NA coding upstream 621616 31431806 ~ 31453460 (+)
sdhc sdhc,LOC103479501 coding downstream 3006 32118953 ~ 32124498 (+)
trnar-ucu_14 NA coding downstream 10410 32126357 ~ 32126430 (+)
kirrel1b LOC101488125,LOC102302400,LOC100705859 coding downstream 116261 32232208 ~ 32325647 (+)
LOC120568561 NA coding downstream 231342 32347289 ~ 32355822 (+)
LOC120568571 NA coding downstream 321511 32437458 ~ 32441095 (+)
LOC120567918 NA non-coding upstream 15703 32056055 ~ 32059373 (+)
G119332 NA non-coding upstream 159475 31849440 ~ 31915601 (+)
G119328 NA non-coding upstream 232105 31838382 ~ 31842971 (+)
G119306 LOC103370525 non-coding upstream 343786 31730145 ~ 31731290 (+)
G119285 NA non-coding upstream 431878 31641354 ~ 31643198 (+)
G119398 NA non-coding downstream 8617 32124564 ~ 32124915 (+)
G119409 NA non-coding downstream 225178 32341125 ~ 32341363 (+)
G119415 NA non-coding downstream 232174 32348121 ~ 32349713 (+)
G119416 NA non-coding downstream 248619 32364566 ~ 32364768 (+)
G119417 NA non-coding downstream 256616 32372563 ~ 32403711 (+)
LOC120567694 LOC103373937,LOC106569580,LOC100136182,LOC107383461,LOC106960171 other upstream 3764 32067563 ~ 32071312 (+)
pip4p1a tmem55b,LOC101161334 other upstream 160372 31888908 ~ 31914704 (+)
dnaaf6 pih1d3,LOC106903480,LOC103138000,LOC103138005,LOC103137996,LOC106960166 other upstream 205581 31865755 ~ 31869495 (+)
G119257 NA other upstream 614168 31459864 ~ 31460908 (+)
G119123 NA other upstream 839511 31198960 ~ 31235565 (+)
cadm3 cadm3 other downstream 12511 32128458 ~ 32226483 (+)
LOC120568569 NA other downstream 336758 32452705 ~ 32471570 (+)
G119582 vangl2,LOC103137974 other downstream 652760 32768707 ~ 32769852 (+)
G119584 vangl2,LOC102795188 other downstream 659127 32775074 ~ 32775682 (+)
G119585 NA other downstream 665041 32780988 ~ 32781471 (+)

Expression


Co-expression Network