nfatc4 (nfatc4,LOC103367103)


Basic Information

Item Value
gene id nfatc4
gene name nfatc4,LOC103367103
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32865946 ~ 32886957 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815973.1
CCCACCCCAAAGGCAATTAAGGGTAAAGGACGACAAAAATATTTGATaaactttttttctccctctctctctctgtcttgaaCCGGGAAGAAGGAGCTACAGGGATGGCGATGGAACTAGAATGAAAGACCCGACTGTGTCTGGGAGATATGTTTCGGAAAAGACTGTGAGATATCCAGAGCGAAGATTGGATTTGGACCGCAAGGCATCCAGCCTGAAAAAGTTGCAAATCCCCGAGCAAGAAGCAGTCCTCATCGTGTGGAAAGCTAGAAAAAGTTGCTGAAGTCACATCAAAACCTTCTAAGAGGAGGGGTATATGCGCTATGACACGCACATAGGAGAAAGACAAAAGTTTTTAGGAATATCTCCGGGAAACTGTCTTTTTCGAGGCGCACCAAGGACGTTAAAGTAGTTACGCAGGGAGAGATTGTATCACTCTCTCTGTATCCTGTCCCCTGCTGCCGGGGGGCGATGGGGGCCGCGCCGGGCTCTGGCTGGGAGGAGGGCGAGTTCGAGTTCAAGTTGGTGTTTGAGGAGGACCCGCCGTCACGGCAGAGCCAGCGGCCATCCCCGGTGCGCACAGCCGAGCCGGAGAATACCGTTCCCGGGGAGGAGAGGGAGTGCGCCCTGCTGCACCTGGACTCCTCCAGCAGCAGCCTGGTTACAGATAACCACCACTCAATCAGCATCCACAGCCCGCCATCCTCGACCAATCAGCGGGCTGGGATGCATTCCCCCCCACCACGGAGGGCCCCCGCCAGAGAGTTCATTGGGACCTATGAGAGCCTGCCAGCGCGCTCTGTACAGGTTTCAGAGTCTCGTGTGGTTGAGTGTCCCAGCATCCAGATAACCACCATCTCCCCTGAAGATGACCTAGCCCCCACCATTTCCAGTTACTGGGACATGGGCAGCGGTGGTGGGTGGGACCGAGAGCGCCTCTACCTCCCCCTGCTGGACCCCTTTACTTACCGAGACAGATGCCCTGGCTCCCTCAGCGCCAGCCCCAGCCCCGGCTCCAGCCCGTCCTCCCGCGGCTGGCTCAGCCCCGCCTCCAGCTGCGACTCGCTgctggtggaggaggaagagctgAACGATGCCACCATCAATTTCGGGCTCTCACCGTCCTCGAGGCCCACTTCCCCTGGAGGTAAAAAGCGTAGAAACTCCCCCCTTGTCTCCCCCTGTACTTCACGCAGGGGTAGTTACTCAGAAGAACTGCAGGGATGCAACCTGGAGGGTGGAGACTCCACCCCTCAGTCACAAGCTCCGCCCAGCAGCTGTGAGCTCAGCATCCCACAGAAAACCAGGAAGACATCACTGGAACAGTTGTCTCCCAGAGAGGTGGATCAGGAGCAGGCTCCAGGCCACAGCTCCCCCTGCCCGCTGCCAGAGACGCAGCAGGCCAGGAGAGAGCCCCCTTCGCTGGGCATGGACTACCTCTCTGTGCCCCCTGCTCTAGCCTGGGGCCGGACCCGGGCCAGCGCCCACAGCCCTCTGTTCAGGTCTAATGCCCTGCCGCCACTGGACTGGCCGCTGCCGTCCCAGTTTGACCAGTACGAGCTGCGTATTGAGGTGCAGCCCCGCCCACACCACCGAGCCCACTATGAGACAGAGGGGAGCAGAGGAGCCGTCAAGGCCACACCAACAGGACACCCTATTGTCAAGCTGTGTGGATACACAGAGAGGAAGCCGCTCTCCCTTCAGGTTTTCGTTGGAACAGCTGATGACCGATCAATCAGGCCACATCCTTTCTATCAGATACACAGGGTGACGGGGAAGATGGTTGGCACTTCCAGTCATGAGAGTGTCCAGGCGGGGACCAAACTTCTGGACATCCCCCTCAACCCTGAGAACAACATGACTGCACTCATTGACTGTGCTGGGATTCTGAAGCTGAGGAACTCGGACATCGAGCTGAGGAAAGGAGAAACAGACGTTGGAAGGAAGAACACACGTGTCCGTTTGGTGTTTCGTACCCACCTCCATCTACCGCCCCCTGGGGCCCCGCCTGGCCGAGTCCTGGCTCTGCAGGTTGCCTCCCTGGCCATTGAATGCTCCCAGCGTTCGGCCCAGGAGCTGCCCGTCATCGAGTCCGTCAGTCTTACCTCGTGCTCtgtggagggaggagaggagcttCTGCTGAGCGGCTCAAACTTCCTGCCCATCTCGAGAGTCATTTTCATGGAGAGAGGGACAGATGGTAAACTGCAGTGGGAGGAGGAGGCTCATGTTGACCGTGACAACAGCAATGAGtgtttgttgtgtgtgaggGTCCCCGCCTACAGCGACCTGTCCGTCAGTCGGCCTATGTCGGTTAGTCTTTACGTCTCCAACGGGAAGAGGAAAAGAAGCAGCACTCACTGCTTCAAGTATCTCCCCGTTATGTTCAAAGAGGAGGACCCGCTGCTGTCCCGGCCCTCTGCGCTGCCTCTGGATGGGACGAATGTGGGTCCTGTAGGGGGTCAACCCAGGATGGACAGGGGCTTCCACGTGAGAGGCATCCCAATGGCTGACGACCAAGGCCTGGGCTTCCACCTCCCCCCCTACCCCTCCACCTACTCCCCTCCCTGCCCCACCATGAGTTACCATGAGGAGTACTGCTCCAAAGCCGACGCTGCGGTGGAGGAGCCCTGCGGGTCCAGGGCAGCCCTGTCCGAGCGTCACCCCAGCTTCGAGAACCTGGAGCTGGGCTTCACGGAGCTTCTTCCTCCCTTATACCCCCGCGGCCCGCagcctccctccccctccccttcccCGTGGTTGGACTCACCCTACCTTTCCTCCTCGCCCTCTCCCTCCCACTCCTCCTCTCTAAGCCCGTTTCCTGCCGGCAGTCCCATCTCCACCTCCCCTCTGCCTCCCATCCCCACCTCCCCTTACCCCCAGTACTCGGCTTATCCTCAGGAGGTGTGCCCCTCGCCTCCCTCCAACCCCAGCCAATATCAGGACATGTGCCCGGCACCCTACTCCCATTACGAGGGCTGGGACCCTCAGGGAAGGGTGCTGGGGATGGAACATGGGGAAGAGAGGGATGTCAAGATCCAGGAGTGCCCCCTGGAGTTTACCAGCTCTTCTATGCACCACATTACATTTGAAGAAGTGACGGAGTTCATCGGGGAGGACATCCAGTCGTACCAGTCAGGCTCACACGTGGACAACCAGCCAAACTGAGCTCAGAGCATGCTCGGAGAGCGTTTGATATTCAGCATCATATTCACCATTATGCACTTGGTATTAAGGATGCATCGCTCCAGTAACATGTGATAATGACAGGGGGATTTCATTACCATGACACTGTTGTAATTATGACCACAGGTAACGGTTTTATGTGGTTTTATAAAGGGAAACTAatgtttttaacatgttttcgATATAAATTATACAAGAAAGTG

Function

symbol description
nfatc4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in calcineurin-NFAT signaling cascade and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of transcription regulator complex. Human ortholog(s) of this gene implicated in dilated cardiomyopathy. Orthologous to human NFATC4 (nuclear factor of activated T cells 4).

NR:

description
nuclear factor of activated T-cells, cytoplasmic 4

GO: NA

KEGG:

id description
K17334 NFATC4, NFAT3; nuclear factor of activated T-cells, cytoplasmic 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815973.1 True 3392 mRNA 0.58 13 32865946 32886957

Neighbor

gene id symbol gene type direction distance location
pex19 pex19 coding downstream 25088 32833516 ~ 32840858 (-)
copa copa,LOC102794619 coding downstream 38626 32815848 ~ 32827320 (-)
ncstn ncstn coding downstream 50456 32796097 ~ 32815490 (-)
LOC120568446 vangl2 coding downstream 72164 32768595 ~ 32793782 (-)
nectin4b NA coding downstream 111824 32724800 ~ 32754122 (-)
mettl17 mettl17 coding upstream 58427 32945384 ~ 32952954 (-)
si:ch211-284o19.8 NA coding upstream 80939 32967896 ~ 32976355 (-)
LOC120568453 LOC103364630 coding upstream 294499 33181456 ~ 33191469 (-)
LOC120568460 LOC101482682,LOC100703124,LOC102296331,LOC102790639,LOC103357352 coding upstream 315924 33202881 ~ 33204851 (-)
LOC120568969 NA coding upstream 370313 33257270 ~ 33270528 (-)
G119593 NA non-coding downstream 105103 32760572 ~ 32760843 (-)
G119590 NA non-coding downstream 108294 32757210 ~ 32757652 (-)
G119570 NA non-coding downstream 215970 32649689 ~ 32649976 (-)
G119567 NA non-coding downstream 271902 32593374 ~ 32594044 (-)
G119528 NA non-coding downstream 295264 32569997 ~ 32570682 (-)
LOC120568464 NA non-coding upstream 51744 32938701 ~ 32940160 (-)
G119686 NA non-coding upstream 85718 32972675 ~ 32973003 (-)
LOC120568465 NA non-coding upstream 285882 33172839 ~ 33176759 (-)
G119847 atp1b3,LOC104945299 non-coding upstream 405803 33292760 ~ 33296161 (-)
G119852 NA non-coding upstream 447267 33334224 ~ 33334542 (-)
G119631 LOC104961532,LOC101466547 other downstream 672 32849719 ~ 32865274 (-)
LOC120567697 copa,LOC103137970 other downstream 33437 32828364 ~ 32832509 (-)
fcer1gl NA other downstream 100735 32760969 ~ 32765211 (-)
LOC120568568 NA other downstream 491428 32364461 ~ 32374518 (-)
G119465 cadm3,LOC106600493 other downstream 639586 32216502 ~ 32226360 (-)
zgc:66427 LOC103370245 other upstream 92249 32979206 ~ 32988559 (-)
LOC120568437 NA other upstream 330233 33217190 ~ 33256937 (-)
selenof selenof other upstream 534432 33421389 ~ 33433925 (-)
gfi1aa gfi1,LOC100698183,LOC101467858,LOC102203194,LOC102781835,LOC106958274 other upstream 758138 33645095 ~ 33649517 (-)
G119989 NA other upstream 767345 33654302 ~ 33659276 (-)

Expression


Co-expression Network