ncstn (ncstn)


Basic Information

Item Value
gene id ncstn
gene name ncstn
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32796097 ~ 32815490 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815975.1
GTCTCCTTTCAGGGGAGCGGAACCAAACTGCGGAACCCGGACGTTTTCCATGTCAACACCTACTGttgtgttcttcttctttttaaaccAGGAAGATGGATTTGCTGTCGAACAAATGGATCGTTAATTTGCTAGTTTGTTGTCTTTTCATCGGTGTCGGCTGTAATTCAGTGGAAAAGAAGATTTATGTGCATCTCAATTACACTGTCCCATGTGTACGACTGCTCAATGCAACCCATCAAATAGGCTGCCAGTCCCATTTGTCAGGTAATGTGGGAGTGCTCCATGTGCTCGAGTCCGAGGAAAACGTGGACTGGGTCCTGCGCTCTGGTCCCAATCCTCCTTATCTGGTTATCCTGGAGTCCCCGCTCTTTACCAGATCCATCATGATGAAGTTGAAGAACGCCTCCAGCAGGGTGGCTGGCGTTGCTGTTGTGGCGCCGAGTGCAAATCCGCTCGAGGGCGTCTCTCCACACACCACCTGTCCCAACGAAAACACAGGCGTGTATACAGAAAACTACGATCCATCCTTGGCCCATTGTAACATGACCGTGTGGAACCCGTTGGGAAGCGGTTTGTCCTACGAGCAGTTCGACTTCCCCATCTTCTCTTTGAAAGACGACAATGACACTCAGGTCATACGGCAGTGTTACATGGACCATAACCGCGCTGTGAACGGCAGCACTCCTCAGTACCCGCTGTGTGCCATGCAGCTCTACTCCCACATGTCCGCAGTCACCGACACGGCCACCTGCATGAGGAGAAATGACATCAACTTTAGCATCAGCCCAGAGATGGTTTGTGACCCATTGGGTGACTATAATGTCTGGGCCTCCACCAGGCCTATTAACAACACAGCCAAGGGCCACAAGATGTGGGAGAGTGTGGTCATAGCAGCAGCCAGGTTGGACAGCAGGTCTTTTTTCTTTGAAGTTGCTCCAGGAGCAGAGAGTGGAGTCTCTGGGTTTGTCACTCTGTTGGCGGCCGCTCACGCTCTGCGAAATCCCATCCAGGTGGCCCCACCCAACCGCACCATTCTCTACACCTTTTTTCAAGGGGAAACCTTTGACTACATCGGCAGTTCGAGGATGGTGTACGATATGCAGAACAATCACTTTGCCGTGGACTTGGACAATGTTCACTCAGTATTGGAGATAGGACAGGTGGGACTTCGTGCTGACTCCAGACTGTGGCTTCACTCTGATCCTGTGTCTAGGAAGAACAGCAGTGTCAATGCAGAGGTGAGGAAGCTCATTGAAAGCTTGCAGTCGGCTGCCGCAGATTTGAACGTCACGGTGAACGAGACCGGTTTCTCTCAGCCACTCCCGCCCTCGTCCTTCCAGCGGTTCCTGCGAGCTCGGCCAATCCCTGGTGTCGTTATCGAGGATCACCAGTCTGCTTTCACCAACAGGTTCTACGAGAGTATGTACGATAATGCAGAATACCTGAACATATCTTACCCACCAAACCTCACGCCAGAGGAGCAGCTGGTGTTAGTCACTGACACCGCTAAGGCTCTGACTGAGGTGGCCACCATGGTTGCCCGGGCTCTGTACATACAGGCAGGAGGAGCTGCAACCCAGCTGAAAAACATCAACGCAGACCCTAACATAGTGACCCGGATGCTGTACGGTTTCCTCGTTCGGTCAAATAACTCCTGGTTCCAGGAACTAATCCCCTCTGACCTCATGAGCCACCTGGCTGACAGGCCCACAAACTTCTACGTGGGCGTGGCCCAGCAGTCCAGCGAGCCGACCCTTCTGGTCCAGTACCTGCTGGCTAACCTGACGGGTAGCCCCACCAACATCAGCCAGGACAACTGCCAGAACCAGCGAGAGGACGAGAAGGACACAGAGAGCAAACATATGTACTACTACATGTGGGTTCAAGGCGCGTTGCCTCCCAACAGCACAAAGAGGGAGAGTTTCTGCGTGCGCTCCACGGTCCGTCTCTCCAAAGCGCTGTCCCCAGCCTTCGACCTGCGGGAGTACACCTCCAAAGACTATTCGACGTGGACGGAGTCCCGGTGGAAGTCCATCAAAGGACGCATATTCCTGGTGGCGAGTCACGATCTGGAGATGTTGACGCTGGGCGTGGGTGTCGCCGTGCTGCTAGCATCCCTGCTGCTGACGTACATCATGAGCTCGAAGGCCGACATCCTCTTCAGCTCGGGGAGGGAGCCGGCCAACGCCACCTACTGATCCAGACTGAGGCGACGCCGGCCCACGACCAccactactacaactactacttcTATCCCCAAGCAGACACGGacggggcttttttttttctttaaaacgcACCACAAGTAGGTACACAGACGGGTTAGATACAGcagatacattttctttttgacGACGACGATGACGACTCCATGTTCATGGACTCGCTCAGGTGAGGCATGGCATGAGGACTGGACCGGACTAGATTGGCCTGGATGGATCTGGACTCCTCAGGGTCCGAAAACCCTTTTCAGGCCCTGTCAgttgaaaagatgtttatatttttttttttttgtttgtttgtttggttttttttcttcttcctttttattgtcaaagaatgttttgtttACTGTGTCATGGGATAGGCACTAAACATTGAGCATTAttttgagcgtgtgtgtgtatgattgtgAATATGTaaatttgagtgtgtgtgtgcgtgcgcgtgtgtccTAGGATTGCGATGGTATGTGCAATACTGTCTTCTCTGTCAATGTAGTTAACTTATCAATCAATTCTAATAAGAAGAAACCACTTTTTGAGTCACTGATCAAGTCGTAGAATTTAAATTTAAGGTTTTGCTAAATCTGGGAATGTGTGGTAAAGTATTTTGATAAGCTTTCGGTTCTGGGATGTTGACAAACCATCCTAAATATTTATATCGTTCAGTCCCAGTACACATATAACTACATGCGTATGTAGTTGTAGACCCACTGCAGTTTcacatattgtgatatttgtgtGGAGAAGAAGAATTCCGAAAGGAATCCAGCGTGGCTAACAAACTCTTTTATTTCATATCGATCAGctgccaaaaaaaaactgtcaaatcCAGTCAGAAGAATCTTGTTTTGACACTAGAAATGCGCTGGTACTCTGGCTGTGcactctgattttatttttttttggttcgTACCTTTCTCACAAGGTTTCTTTTAATGATAACTTCTGAAAAATTGTATCAACCTGCAAGAAAGTTTTGATTTTGTTGTAAATGTGATTGCTGGAATCAATGACCAATGGTGATGCCTTGATGGAGAAATAAACATTGCTTCTTTTCCAGATCTTC

Function

symbol description
ncstn Predicted to act upstream of or within protein processing. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including caudal fin; central nervous system; gill; heart; and otic vesicle. Used to study vitiligo. Human ortholog(s) of this gene implicated in Alzheimer's disease; hidradenitis suppurativa; and schizophrenia. Orthologous to human NCSTN (nicastrin).

NR:

description
nicastrin

GO:

id name namespace
GO:0016485 protein processing biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K06171 NCSTN; nicastrin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815975.1 True 3294 mRNA 0.49 17 32796097 32815490

Neighbor

gene id symbol gene type direction distance location
LOC120568446 vangl2 coding downstream 2315 32768595 ~ 32793782 (-)
nectin4b NA coding downstream 41975 32724800 ~ 32754122 (-)
tesk2 tesk2,LOC100707995,LOC102795977,LOC102307376,LOC102211946 coding downstream 82770 32659535 ~ 32713327 (-)
si:dkeyp-68b7.12 arhgap30 coding downstream 148709 32629442 ~ 32647388 (-)
LOC120568450 NA coding downstream 173006 32618046 ~ 32623091 (-)
copa copa,LOC102794619 coding upstream 358 32815848 ~ 32827320 (-)
pex19 pex19 coding upstream 18026 32833516 ~ 32840858 (-)
nfatc4 nfatc4,LOC103367103 coding upstream 50456 32865946 ~ 32886957 (-)
mettl17 mettl17 coding upstream 129894 32945384 ~ 32952954 (-)
si:ch211-284o19.8 NA coding upstream 152406 32967896 ~ 32976355 (-)
G119593 NA non-coding downstream 35254 32760572 ~ 32760843 (-)
G119590 NA non-coding downstream 38445 32757210 ~ 32757652 (-)
G119570 NA non-coding downstream 146121 32649689 ~ 32649976 (-)
G119567 NA non-coding downstream 202053 32593374 ~ 32594044 (-)
G119528 NA non-coding downstream 225415 32569997 ~ 32570682 (-)
LOC120568464 NA non-coding upstream 123211 32938701 ~ 32940160 (-)
G119686 NA non-coding upstream 157185 32972675 ~ 32973003 (-)
LOC120568465 NA non-coding upstream 357349 33172839 ~ 33176759 (-)
G119847 atp1b3,LOC104945299 non-coding upstream 477270 33292760 ~ 33296161 (-)
G119852 NA non-coding upstream 518734 33334224 ~ 33334542 (-)
fcer1gl NA other downstream 30886 32760969 ~ 32765211 (-)
LOC120568568 NA other downstream 421579 32364461 ~ 32374518 (-)
G119465 cadm3,LOC106600493 other downstream 569737 32216502 ~ 32226360 (-)
G119379 NA other downstream 744658 32047477 ~ 32051439 (-)
zeb1a LOC103364416,LOC100701828,LOC102292734,LOC101079552 other downstream 1220904 31469595 ~ 31575193 (-)
LOC120567697 copa,LOC103137970 other upstream 12874 32828364 ~ 32832509 (-)
G119631 LOC104961532,LOC101466547 other upstream 34229 32849719 ~ 32865274 (-)
zgc:66427 LOC103370245 other upstream 163716 32979206 ~ 32988559 (-)
LOC120568437 NA other upstream 401700 33217190 ~ 33256937 (-)
selenof selenof other upstream 605899 33421389 ~ 33433925 (-)

Expression


Co-expression Network