LOC120568446 (vangl2)


Basic Information

Item Value
gene id LOC120568446
gene name vangl2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32768595 ~ 32793782 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039815997.1
TGGAGACGGAGGAGGGACCAAAGTGGAGCGGAGGCGGGGCGCACGGCGCTACGGCTGAGTGGAAAGAAAAGTGGAAAGTGAGGAAAATACCTGAATGGACAGTCTGGAATAAATCCGGCCCCCTCAGCTGTCCCCTGCTGTGACTCTCCCacccctcttctcctcctcgcTGTAGCCTCCCccgctctccctcctcccttctccTGCTCCCTCCTCATCGGCCTCCAAGATAGATTCCCTCAGGAGTAAGGTTGACCTGCTCAAGCTGCCCCTGGCTCTCACCACCAAGTCCATCTCTGAGCGCAAGAGCCAGCTGGGAGGAGTGGGCGAGCAGCGCCGcccgggaggaggaggaggcgggcCTCGCAAAGCCTGTTCACCGCCCAGCCGAGACATGGACAACGAGTCGCAGTACTCGGGCTACTCTTACAAGTCCTCACACTCCCGAAGCTCCAGAAAGCACAGGGATCGGAGGGATCGCCACCGCTCTAAGAGCCGAGATGGTAGTCGTGGAGACAAGTCGGTCACCATCCAGACTCCTGGAGAGCCGCTGCTGGATGCAGAGTCGACCCGCGGAGATGACCGGGATGATAACTGGGGTGAGACCACCACAGTTGTCACCGGCACCTCAGAACACAGCATCTCTAACGAGGACCTGACCCGCGTCACCAAAGAGTTGGAGGAGTCGACTCCGCTGGAGTGCAAGCGCTTCATTGGCCCGGCTCTGGGAGGCTGCCTGAGCTTCTTCGCCCTGGTCACGCCGTTAGCCTTCCTCATCCTCCCGCAGGTGCTGTGGCGGGACGCCCTGGAGCCCTGCGGGACGCCCTGCGAAGGCCTGTACGTCTCCCTGGCCTTCAAGCTGCTGGTCCTGCTCATCTCGTCCTGGGCGCTGTTTCTCCGGCCGCCGCGCGCCACGCTGCCGCGCTTCTTTGTCTTCCGCTGCCTGCTGATGGTGCTGGTGTTCCTGTTCGTAGCGTCCTACTGGCTGTTCTACGGCGTGCGGGTGCTGGAGCCCAGGGAGCGGGACTACAGGGGGATCGTGGAGTACGCTGCCTCGCTGGTAGACGCCCTGCTCTTCATACAGTACCTGGCTCTGGTTCTGCTGGAGGTCCGACACCTGCAGCCCGCCTTTTGCCTCAAGGTGGTCCGGAGCACGGACGGAGCCAGCAAGTTCTACAACGTGGGCCACCTCAGTATCCAGCGGGCAGCTGTCTGGGTGTTGGACCGTTATTACAGCGACTTCTCCGTCTACAACCCTGCCCTGCTCAACCTGCCCAAGTCCATCCTGTCCAAGAAGATGACCGGCTTCAAGGTTTACTCCCTGGACGAAAGCACCACCAATAACTCATCGGGCCAGTCCCGGGCCATGATAGCAGCTGCCGCCCGCCGGAGAGACAACTCCCACAACGAGTTCTACTACGAGGAGGCCGAGATGGACCGCAGGGTCCGCAAACGCAAGGCCAGGTTGGTCGTGGCGGTGGAAGAGGCCTTCACACACATCAAGCGTCTCCACGAAGACGAGGTCGCCTCGTCCCCCAAACACCCTCGGGAGGTGATGGACCCTCGGGAGGCGGCTCAGGCCATCTTCGCCCCGATGGCCCGAGCCATGCAGAAATACCTGAGAACCACCCGGCAGCAGGCTTTCCACAGCATGGAGAGCATCCTCACACACCTGCAGTTctgcatcacacacaacatgacGCCCAGGGCGTTCCTGGAGCGGTACCTCTCCCCGGGCCCCACCATGCAGTACCAGCAGCAGAACGGCAGGGGGCGCCAGTGGACCTTAGTGAGCGAGGAGCCGGTGACCTCGGCCCTGCGCCAGGGTCTGGTCTTCTCCCTGCGACGCCTGGACTTTTCCCTGGTCGTCACGGTGACGCCGCTGCCCTTCCTGCGCCTCGGGGAGGAGTTCATCGATCCGAAGAGCCACAAGTTCGTCATGAGGCTGCAGTCGGAGACCTCGGTGTGAAGGCATCGCCCTTCTCCCCACTCCCCCCACGTTGTCCTCTCTAGGTACTCGCTCCTGCTGGATGTGGACGGGACATGCGGGAGGCCATTGTGGCCCACTCCCCCATCcaatcatcctcctcctcctgttccaTGATCGTCACAGATGCTCTGATATCAAACTGTGATCAGCTCAACGATTGTTCAAACCTGGAATTAAACAGATGCCTTgaccttttttttgtctttttctttacctGTGTTGTAAAatctttgtctttgttgaaaaaaaaaaagggggggactttttctctttttttttgctccCTCTGTTGCTGTAACCACTGGACTGCTGACTCACATGAACACCAGAGGAGGGGGATTACATCATACGtgtcacttcctctttcttgtGTATTAAACACAGACTACCTGGAGCTCAGCTCTGACTGCAGCGCTGGTTACCACTGCCCATTGGTTTCCTCTCAGTGGATTGTTTTGTGTCAAATGACaaggactgtttttatattaaagggtgtgacttttttttttttacttacagaATGTAGCATTATGTGCTTTGAATTCACGTGTGGCTTTTCAGCAGCCTAAAGGCCAAAATGTCGTTTTATATCTTGACTGTAAAGAAACATGGAAGTACATTCCTAAGCTACTCCAGAATACAGAATTCATGATTGTCTACATATGCAGGTTTTGTTTTATTCTACACTGGCATTTTTTACTATTCATTTTACAGTTTAAGCAAGAAGACTAAACAAGGGCCCCATGTATAGCTGTTATAATCATGCAATCTGTATCTGCTTATCTTAACTGGATAAGGATGTTAAAGCATAAGCCTCGAGTATTATTCAGAATTTtctttattgtcaacaaatcccattaaaATCCCAGATATCCAGCAGTGTGTTAGAATGTGTTTCCATACTTCCTGACTTCCCTACCCTGTCTGGAAGTCTGAAGTCcattctttaaagaaaaaaaaaaagtacactttatttaaaaaaa
>XM_039815999.1
GTAGGTAGGACGCGATGGTCGCCTCTGTATCAAACCGCAGGGAAGTTTAGGACCCTCATCGTCCCTATTGTTGTTCTCACCGCGGCCACGTAGCTCTGCGGAGCGATCGGAAACGTGGGAGGGGGTGTGATGTGTTTCTAAATGTTACTGGGGGAGAAAACGGTAAAGAGATGCGCATGGAGGGAACGATCGCGTCTAGTTTGATTGTAGCTATGTAGGCCGAcggttttttttgtaattttctccaTGGTGAAGGGCTGCTGGGAATCTGAGTGCGTCCATTCATTTCACCGCGAGGGCGTCCCGTTTGGAGAAGGGGAAAAAGGCGGAAGAAAGGGAACGAGCATTTGGATCGTTTTGGCACCAGGACGCGGCCAGTGGGGCCTGGGAGTCTCCCATTGTCCTGTCCTGTACTACAACACCCTCTTGTTTCTGTTTGGAGGTCGCACAACTCTTTTTCTATTCGCCCTAAATGCTCCCGGCTCCTCACAATCCGGCCCCCTCAGCTGTCCCCTGCTGTGACTCTCCCacccctcttctcctcctcgcTGTAGCCTCCCccgctctccctcctcccttctccTGCTCCCTCCTCATCGGCCTCCAAGATAGATTCCCTCAGGAGTAAGGTTGACCTGCTCAAGCTGCCCCTGGCTCTCACCACCAAGTCCATCTCTGAGCGCAAGAGCCAGCTGGGAGGAGTGGGCGAGCAGCGCCGcccgggaggaggaggaggcgggcCTCGCAAAGCCTGTTCACCGCCCAGCCGAGACATGGACAACGAGTCGCAGTACTCGGGCTACTCTTACAAGTCCTCACACTCCCGAAGCTCCAGAAAGCACAGGGATCGGAGGGATCGCCACCGCTCTAAGAGCCGAGATGGTAGTCGTGGAGACAAGTCGGTCACCATCCAGACTCCTGGAGAGCCGCTGCTGGATGCAGAGTCGACCCGCGGAGATGACCGGGATGATAACTGGGGTGAGACCACCACAGTTGTCACCGGCACCTCAGAACACAGCATCTCTAACGAGGACCTGACCCGCGTCACCAAAGAGTTGGAGGAGTCGACTCCGCTGGAGTGCAAGCGCTTCATTGGCCCGGCTCTGGGAGGCTGCCTGAGCTTCTTCGCCCTGGTCACGCCGTTAGCCTTCCTCATCCTCCCGCAGGTGCTGTGGCGGGACGCCCTGGAGCCCTGCGGGACGCCCTGCGAAGGCCTGTACGTCTCCCTGGCCTTCAAGCTGCTGGTCCTGCTCATCTCGTCCTGGGCGCTGTTTCTCCGGCCGCCGCGCGCCACGCTGCCGCGCTTCTTTGTCTTCCGCTGCCTGCTGATGGTGCTGGTGTTCCTGTTCGTAGCGTCCTACTGGCTGTTCTACGGCGTGCGGGTGCTGGAGCCCAGGGAGCGGGACTACAGGGGGATCGTGGAGTACGCTGCCTCGCTGGTAGACGCCCTGCTCTTCATACAGTACCTGGCTCTGGTTCTGCTGGAGGTCCGACACCTGCAGCCCGCCTTTTGCCTCAAGGTGGTCCGGAGCACGGACGGAGCCAGCAAGTTCTACAACGTGGGCCACCTCAGTATCCAGCGGGCAGCTGTCTGGGTGTTGGACCGTTATTACAGCGACTTCTCCGTCTACAACCCTGCCCTGCTCAACCTGCCCAAGTCCATCCTGTCCAAGAAGATGACCGGCTTCAAGGTTTACTCCCTGGACGAAAGCACCACCAATAACTCATCGGGCCAGTCCCGGGCCATGATAGCAGCTGCCGCCCGCCGGAGAGACAACTCCCACAACGAGTTCTACTACGAGGAGGCCGAGATGGACCGCAGGGTCCGCAAACGCAAGGCCAGGTTGGTCGTGGCGGTGGAAGAGGCCTTCACACACATCAAGCGTCTCCACGAAGACGAGGTCGCCTCGTCCCCCAAACACCCTCGGGAGGTGATGGACCCTCGGGAGGCGGCTCAGGCCATCTTCGCCCCGATGGCCCGAGCCATGCAGAAATACCTGAGAACCACCCGGCAGCAGGCTTTCCACAGCATGGAGAGCATCCTCACACACCTGCAGTTctgcatcacacacaacatgacGCCCAGGGCGTTCCTGGAGCGGTACCTCTCCCCGGGCCCCACCATGCAGTACCAGCAGCAGAACGGCAGGGGGCGCCAGTGGACCTTAGTGAGCGAGGAGCCGGTGACCTCGGCCCTGCGCCAGGGTCTGGTCTTCTCCCTGCGACGCCTGGACTTTTCCCTGGTCGTCACGGTGACGCCGCTGCCCTTCCTGCGCCTCGGGGAGGAGTTCATCGATCCGAAGAGCCACAAGTTCGTCATGAGGCTGCAGTCGGAGACCTCGGTGTGAAGGCATCGCCCTTCTCCCCACTCCCCCCACGTTGTCCTCTCTAGGTACTCGCTCCTGCTGGATGTGGACGGGACATGCGGGAGGCCATTGTGGCCCACTCCCCCATCcaatcatcctcctcctcctgttccaTGATCGTCACAGATGCTCTGATATCAAACTGTGATCAGCTCAACGATTGTTCAAACCTGGAATTAAACAGATGCCTTgaccttttttttgtctttttctttacctGTGTTGTAAAatctttgtctttgttgaaaaaaaaaaagggggggactttttctctttttttttgctccCTCTGTTGCTGTAACCACTGGACTGCTGACTCACATGAACACCAGAGGAGGGGGATTACATCATACGtgtcacttcctctttcttgtGTATTAAACACAGACTACCTGGAGCTCAGCTCTGACTGCAGCGCTGGTTACCACTGCCCATTGGTTTCCTCTCAGTGGATTGTTTTGTGTCAAATGACaaggactgtttttatattaaagggtgtgacttttttttttttacttacagaATGTAGCATTATGTGCTTTGAATTCACGTGTGGCTTTTCAGCAGCCTAAAGGCCAAAATGTCGTTTTATATCTTGACTGTAAAGAAACATGGAAGTACATTCCTAAGCTACTCCAGAATACAGAATTCATGATTGTCTACATATGCAGGTTTTGTTTTATTCTACACTGGCATTTTTTACTATTCATTTTACAGTTTAAGCAAGAAGACTAAACAAGGGCCCCATGTATAGCTGTTATAATCATGCAATCTGTATCTGCTTATCTTAACTGGATAAGGATGTTAAAGCATAAGCCTCGAGTATTATTCAGAATTTtctttattgtcaacaaatcccattaaaATCCCAGATATCCAGCAGTGTGTTAGAATGTGTTTCCATACTTCCTGACTTCCCTACCCTGTCTGGAAGTCTGAAGTCcattctttaaagaaaaaaaaaaagtacactttatttaaaaaaa

Function

symbol description
vangl2 Involved in several processes, including chordate embryonic development; convergent extension involved in gastrulation; and regulation of Wnt signaling pathway. Acts upstream of or within several processes, including embryonic morphogenesis; generation of neurons; and sensory organ development. Located in plasma membrane. Is expressed in central nervous system; liver; pharyngeal arch; and sensory system. Used to study ciliopathy. Human ortholog(s) of this gene implicated in neural tube defect. Orthologous to human VANGL2 (VANGL planar cell polarity protein 2).

NR:

description
PREDICTED: vang-like protein 2 isoform X1

GO:

id name namespace
GO:0060070 canonical Wnt signaling pathway biological_process
GO:0060071 Wnt signaling pathway, planar cell polarity pathway biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0021535 cell migration in hindbrain biological_process
GO:0014812 muscle cell migration biological_process
GO:0001756 somitogenesis biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001764 neuron migration biological_process
GO:0000902 cell morphogenesis biological_process
GO:0003401 axis elongation biological_process
GO:0055002 striated muscle cell development biological_process
GO:0035844 cloaca development biological_process
GO:0045813 positive regulation of Wnt signaling pathway, calcium modulating pathway biological_process
GO:0000132 establishment of mitotic spindle orientation biological_process
GO:0001839 neural plate morphogenesis biological_process
GO:0001841 neural tube formation biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0030903 notochord development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K04510 VANGL; vang-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039815997.1 False 2973 mRNA 0.55 8 32768595 32793782
XM_039815999.1 True 3352 mRNA 0.55 8 32768595 32793505

Neighbor

gene id symbol gene type direction distance location
nectin4b NA coding downstream 14473 32724800 ~ 32754122 (-)
tesk2 tesk2,LOC100707995,LOC102795977,LOC102307376,LOC102211946 coding downstream 55268 32659535 ~ 32713327 (-)
si:dkeyp-68b7.12 arhgap30 coding downstream 121207 32629442 ~ 32647388 (-)
LOC120568450 NA coding downstream 145504 32618046 ~ 32623091 (-)
LOC120568440 NA coding downstream 153697 32603143 ~ 32614898 (-)
ncstn ncstn coding upstream 2315 32796097 ~ 32815490 (-)
copa copa,LOC102794619 coding upstream 22066 32815848 ~ 32827320 (-)
pex19 pex19 coding upstream 39734 32833516 ~ 32840858 (-)
nfatc4 nfatc4,LOC103367103 coding upstream 72164 32865946 ~ 32886957 (-)
mettl17 mettl17 coding upstream 151602 32945384 ~ 32952954 (-)
G119593 NA non-coding downstream 7752 32760572 ~ 32760843 (-)
G119590 NA non-coding downstream 10943 32757210 ~ 32757652 (-)
G119570 NA non-coding downstream 118619 32649689 ~ 32649976 (-)
G119567 NA non-coding downstream 174551 32593374 ~ 32594044 (-)
G119528 NA non-coding downstream 197913 32569997 ~ 32570682 (-)
LOC120568464 NA non-coding upstream 144919 32938701 ~ 32940160 (-)
G119686 NA non-coding upstream 178893 32972675 ~ 32973003 (-)
LOC120568465 NA non-coding upstream 379057 33172839 ~ 33176759 (-)
G119847 atp1b3,LOC104945299 non-coding upstream 498978 33292760 ~ 33296161 (-)
G119852 NA non-coding upstream 540442 33334224 ~ 33334542 (-)
fcer1gl NA other downstream 3384 32760969 ~ 32765211 (-)
LOC120568568 NA other downstream 394077 32364461 ~ 32374518 (-)
G119465 cadm3,LOC106600493 other downstream 542235 32216502 ~ 32226360 (-)
G119379 NA other downstream 717156 32047477 ~ 32051439 (-)
zeb1a LOC103364416,LOC100701828,LOC102292734,LOC101079552 other downstream 1193402 31469595 ~ 31575193 (-)
LOC120567697 copa,LOC103137970 other upstream 34582 32828364 ~ 32832509 (-)
G119631 LOC104961532,LOC101466547 other upstream 55937 32849719 ~ 32865274 (-)
zgc:66427 LOC103370245 other upstream 185424 32979206 ~ 32988559 (-)
LOC120568437 NA other upstream 423408 33217190 ~ 33256937 (-)
selenof selenof other upstream 627607 33421389 ~ 33433925 (-)

Expression


Co-expression Network