si:ch211-155e24.3 (si:ch211-155e24.3,LOC108427093,LOC107549816,LOC107750208,LOC107671805)


Basic Information

Item Value
gene id si:ch211-155e24.3
gene name si:ch211-155e24.3,LOC108427093,LOC107549816,LOC107750208,LOC107671805
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32651304 ~ 32656857 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816001.1
CGGTCACCTCGTTGTGGAATTCAGTACGTCCCTAAGTGGCAGAGATAACGTGGAACTAACAGCACTGCTAACgtgaattaaaacaaacattccCCATCTCGTGTTAAAATCATACCGTGGAAGGTGTCGAAATATGTCAGTAAAAAAAGATTCAATCGTTTTAATGCAACTAAAagcagagagggagtgagacCGCCCGAGCTGACCACGGGTGGTGAAAACGAGCGACCCTCCCCCTACGTTACCGTCCGCGGAAGACATTTAGCATTTTCACAGCACGAGTACACACAGTCCTCTGAGCACCAATTTGCATCTATTTAACCTGCAAGTGAGCGACATACAGACGCGTACAGGtgaatatatttatttctttttgaatAAAGAGACTGAACTCGGCGTCAACATGGAGGACTGCGGCTTCCAGAGCCAGCTACTGTCCGTCATGGAGGTCCTGGCCAAGGCAGCTGTGGCGGAGATAACCCGGCGTGTGGATGACAGCTGCGCGGTGCTCCGACTGGAGGTGAGCCAGAGCCGGCGGGACATCGAGCTGCTGAAGCGGAAGAGTGAGGTGATGGAGGCCGAGCTGAGGAGGAGCAGGATGAGAGCCAGGAGGAAAGCGTTTTATCCTCCAGCAGCAGAGAGATTCTCTCCTTTAGTGCGAGTGGTGTTgaacagagggagacagagcaCATGTTGGGACGCTGAGGCTCAAACTCAACCCCAGCAGTGTGCAGACGTGGAATGTGCTAATGAAGCTGGACACATCCTGATCAAAGAGGAGTGTGCGGAGGAGGACCTGTGGAAGAACGAGTCGGAGGACAATCTCAtctgtgaaGCCGAGCAGATGCCATGTTTGGAAGCCTCACAGCCCGCCCAGAACGACATCTTTGTAGCGCACTACCACCCAGCTGAGAACGCAGCCGAGCCTGGAGCTCTGGTTTTCCCGACAGACGGCTACGACACGTTCCCTGAGCAGCAGCCGCAGCCGCCGCACAGACACCATACTGCCGCAGAGCTCGTAGTGAAACACGAGAGAGACGGAGAGCCCGACGAGAAGGCAGCGCCTCTCGATTCCGCCCACGGGTTTGTGACGGAGGAAGGAGACGGACAGCTGTGGTCGTCCAATCAGTGTAGAGACGCTGCTGAGCCGAGCTTCCCGTATGCCGAGCCACAGTTTGAGCCACCTCCCTCTGCGGCCCAGCCTCAAAGCGGACTGCATTTGGAAGACACGGTGCCCCGAATTCACTCGATAGGGAAGTCCCACTCGGTCACGGCGAGTTCAGCACGCGTGAAGAGACGAGCCAGAGCGTTTGGATGTAAGAGGCCGCAGCCAGATGAAGGACAGATCAACACCATGGACCGATGCTCGGTTCCTCCGCCGCCACAGCATCATCAGTACCCGGGGTCTCCTCAAGGGAGGAACCCAAACCAGGATTTGCCGCCGCCGCCGAACCTAGCCGCAGGCGTTTCTTCTTTCTGCGGGCACAGCCGCGGCGGCCTGGGCCTGGCGAGGAGGACGAGGACGCCCTGGAGGTCCGGCGTTGGCGAGAAGAGGTTCAGCTGCACGTACTGCGACAAAAGCTTCATGAGGTTTAGTCAGCTCAAGGAGCACCTGCGGAGCCACACGGGGGAGAAACCGTTCAGCTGCCTGCAGTGCGGCCGCAGCTTCACCAAACAGTGCAACCTGATCCGGCACGCGGTGGTGCACAGCGGAGAGAAGCCCTACGCGTGCTCGCTGTGCGGCAAGTGCTTCACCCAGCGATCCAGCCTCAAGTCCCATCAGAAAACCGCACACTGACTTCACAGGGGTTTAAGGccgatttatgcttctgcgttaaagcCACGGCGTCGGTACGTGTAGatacggaccctacgccgtagcctggcGTGCCCCAGGCCTGGgtacggaccctacgccgtagcctggcGTGCCCCAGGCCTGGgtacggaccctacgccgtagcctggcGTGCCCCAGGCCTGGgtacggaccctacgccgtagcctggcGTGCCCCAGGCCTGGgtacggaccctacgccgtagtcTGGCGTGCTCCTctcaaaaaaatgtaactacacgtcgcggcgatgCAGACTgcaacaactgtgtgtgtgtgtgtcc

Function

symbol description
si:ch211-155e24.3 Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleoplasm.

NR:

description
PREDICTED: uncharacterized protein LOC108427093

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816001.1 True 2123 mRNA 0.58 4 32651304 32656857

Neighbor

gene id symbol gene type direction distance location
LOC120568820 LOC101162955,LOC103374738 coding upstream 64955 32575313 ~ 32586349 (+)
LOC120568570 NA coding upstream 164896 32472620 ~ 32486408 (+)
LOC120568571 NA coding upstream 210209 32437458 ~ 32441095 (+)
LOC120568561 NA coding upstream 295482 32347289 ~ 32355822 (+)
kirrel1b LOC101488125,LOC102302400,LOC100705859 coding upstream 325657 32232208 ~ 32325647 (+)
LOC120568452 LOC103367094 coding downstream 59896 32716753 ~ 32721611 (+)
myadmb LOC104961532,LOC101466547 coding downstream 186242 32843099 ~ 32852397 (+)
ltb4r2b NA coding downstream 272594 32929451 ~ 32938337 (+)
sdr39u1 sdr39u1 coding downstream 284349 32941206 ~ 32945386 (+)
parp2 parp2 coding downstream 296419 32953276 ~ 32973757 (+)
G119541 NA non-coding upstream 16585 32633628 ~ 32634719 (+)
G119519 NA non-coding upstream 86818 32563841 ~ 32564486 (+)
G119453 kcnj10 non-coding upstream 95566 32549144 ~ 32555738 (+)
LOC120568573 NA non-coding upstream 146011 32504212 ~ 32505293 (+)
G119417 NA non-coding upstream 247593 32372563 ~ 32403711 (+)
G119556 NA non-coding downstream 52438 32709295 ~ 32710372 (+)
G119579 NA non-coding downstream 100526 32757383 ~ 32757653 (+)
G119583 vangl2,LOC103367097 non-coding downstream 113571 32770428 ~ 32770954 (+)
G119586 NA non-coding downstream 136160 32793017 ~ 32793495 (+)
G119622 pex19 non-coding downstream 179224 32836081 ~ 32837200 (+)
LOC120568569 NA other upstream 179734 32452705 ~ 32471570 (+)
cadm3 cadm3 other upstream 424821 32128458 ~ 32226483 (+)
LOC120567694 LOC103373937,LOC106569580,LOC100136182,LOC107383461,LOC106960171 other upstream 579992 32067563 ~ 32071312 (+)
pip4p1a tmem55b,LOC101161334 other upstream 736600 31888908 ~ 31914704 (+)
dnaaf6 pih1d3,LOC106903480,LOC103138000,LOC103138005,LOC103137996,LOC106960166 other upstream 781809 31865755 ~ 31869495 (+)
G119582 vangl2,LOC103137974 other downstream 111850 32768707 ~ 32769852 (+)
G119584 vangl2,LOC102795188 other downstream 118217 32775074 ~ 32775682 (+)
G119585 NA other downstream 124131 32780988 ~ 32781471 (+)
tep1 LOC104950563,LOC104941471 other downstream 331960 32988817 ~ 33049081 (+)
LOC120568463 NA other downstream 507059 33163916 ~ 33166100 (+)

Expression


Co-expression Network