LOC120568453 (LOC103364630)


Basic Information

Item Value
gene id LOC120568453
gene name LOC103364630
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33181456 ~ 33191469 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816007.1
TGATACAAAACCAGCATCCCTGTGCAGTACTGCGCCATCGCCAGTGACGTTAGGTTAGCCCGGTGGTTAGAAGCTAGTAGCCCGCTGCTCAGGGCATTTAGTACCCCTGAATCGCttgtgctaaaaaaaaagaaggacgATCTAAAGTAACGTATTTGACCGATTTTACCGAAAGCAAGACATTTTACTCGTAAAGGTCGCGTATAAATCGCGAGGGGCGAAGGTTCGAGACACCAGCCCAAACTGAACCCAGCCCACAGTGTCAAACATCAGACAGACGACAGCCCTGCACACAGACGCTATGGATCGTTCACCCACCACCGCCAGCCTGATGGCCGCCAGCAACGTCACCAACAAGACGGACCCGCGCTCCCTTAACTCCCGGGTCTTCATCGGCAACCTCAACACCCTGCTGGTCACCAAGGGCGATGTCGAGGCCATCTTCTCCAAATATGGCAAGATCGTGGGCTGCTCCATCCACAAAGGCTACGCCTTCGTCCAGTTCGCCAACGAGCGGAACGCCCGATCTGCCGTCGACGGCGAGGACGGGAGGATGATTGTCGGACAAGTGCTTGACATCAACCTGGCCGGAGAACCCAAACCACACAGGTCAAAAACAGGCAAACGCTCGGCTGGAGACATGTACAGCAGTTCCTCGTTTGAACTCGACTACGACTTTCAGAGAGATTATTACGACCGAATGTACTCGTACCCGTCCCGTGTGCCcgctccccctcccccccccttgtCCCGGGCCGTGATCCCGTCCAAGCGGCCGCGGGTCAGCCTGAGCGGAGGAAGCAGCCGGCGAACCAAGAGCAGCTTCACCTCTTCCTCCAAGAGGACTTCCTCCTCCAGAACCATGAAAGTGGACGAGCTGCAGGCCGTCAAGCGGGAGTTGACCCAAATCAAAAGCAAAGTGGACGACCTGCTGGATAGCCTGGAGCGCATGGAGAAGGACCACGGCAAGAAGTCAGAAGCTAAGAGTGTAAAAACGGAGCCGGGCGAGGTGACTTCACCTCCGCACCCAAGCAACAAGGATGACGggtcaaagagagagagggagagccagGTGATCAACGACTCGGAGGACGACGACGACGATGGCGAGGATGAGGGAGAcctgctggaggaggaggaagagATGAAGAGTCAAGAGAGGGACGACGATATGgacgatgaggaggaggaaggcgaGCACGTGGAAGGTGACGACGATGGCGACAGCGTCAACGGCGAAGAGGTCTTGTAGGCACGGACCGCACCGGCCACGCATGCATCGTACACACAGCTTCCAGTAGGAACTCGGACTCCTGTTTTAACTCATGTTGTAGAGAcataaaaagaaacacacacacacacacacacacacacacacacacacacacgcaaacatgcaaacatgcacacacgcacacacgcaggcaggcaggcatggtgcacacacactgttgtCCCATTGTCCCTAAAGctgatttgtgtttattttggcCTGTTGTCCAGTGTTGCTGTACCAGGGATAACTAGCTGTAGGTTTgggtttgtgtttttactgcGTCGTTACTCGTCTTCATGGGACACGGAAACATGGACTGTCGATGATCTCAGAGACGACAGCTCAGCGGACATGTCTTAACGCGAGGACGAACACCCAGCTACGAAAGACCGTTTTTAGGTTCATTGTGTTTGTATTTCCTCTCATCCGTGAGTTTGTTCGACCtcgtgtgtctgtatgttaatGTCCGTTTTTTATACTATTCAGTTTCAGTTTAACTGTAAAGgaataaattgcaataaaatattaaaatggaaa
>XM_039816008.1
ACCAGCATCCCTGTGCAGTACTGCGCCATCGCCAGTGACGTTAGGTTAGCCCGGTGGTTAGAAGCTAGTAGCCCGCTGCTCAGGGCATTTAGTACCCCTGAATCGCttgtgctaaaaaaaaagaaggacgATCTAAAGTAACGTATTTGACCGATTTTACCGAAAGCAAGACATTTTACTCGTAAAGGTCGCGTATAAATCGCGAGGGGCGAAGGTTCGAGACACCAGCCCAAACTGAACCCAGCCCACAGTGTCAAACATCAGACAGACGACAGCCCTGCACACAGACGCTATGGATCGTTCACCCACCACCGCCAGCCTGATGGCCGCCAGCAACGTCACCAACAAGACGGACCCGCGCTCCCTTAACTCCCGGGTCTTCATCGGCAACCTCAACACCCTGCTGGTCACCAAGGGCGATGTCGAGGCCATCTTCTCCAAATATGGCAAGATCGTGGGCTGCTCCATCCACAAAGGCTACGCCTTCGTCCAGTTCGCCAACGAGCGGAACGCCCGATCTGCCGTCGACGGCGAGGACGGGAGGATGATTGTCGGACAAGTGCTTGACATCAACCTGGCCGGAGAACCCAAACCACACAGGTCAAAAACAGGCAAACGCTCGGCTGGAGACATGTACAGCAGTTCCTCGTTTGAACTCGACTACGACTTTCAGAGAGATTATTACGACCGAATGTACTCGTACCCGTCCCGTGTGCCcgctccccctcccccccccttgtCCCGGGCCGTGATCCCGTCCAAGCGGCCGCGGGTCAGCCTGAGCGGAGGAAGCAGCCGGCGAACCAAGAGCAGCTTCACCTCTTCCTCCAAGAGGACTTCCTCCTCCAGAACCATGAAAGTGGACGAGCTGCAGGCCGTCAAGCGGGAGTTGACCCAAATCAAAAGCAAAGTGGACGACCTGCTGGATAGCCTGGAGCGCATGGAGAAGGACCACGGCAAGAAGTCAGCTAAGAGTGTAAAAACGGAGCCGGGCGAGGTGACTTCACCTCCGCACCCAAGCAACAAGGATGACGggtcaaagagagagagggagagccagGTGATCAACGACTCGGAGGACGACGACGACGATGGCGAGGATGAGGGAGAcctgctggaggaggaggaagagATGAAGAGTCAAGAGAGGGACGACGATATGgacgatgaggaggaggaaggcgaGCACGTGGAAGGTGACGACGATGGCGACAGCGTCAACGGCGAAGAGGTCTTGTAGGCACGGACCGCACCGGCCACGCATGCATCGTACACACAGCTTCCAGTAGGAACTCGGACTCCTGTTTTAACTCATGTTGTAGAGAcataaaaagaaacacacacacacacacacacacacacacacacacacacacgcaaacatgcaaacatgcacacacgcacacacgcaggcaggcaggcatggtgcacacacactgttgtCCCATTGTCCCTAAAGctgatttgtgtttattttggcCTGTTGTCCAGTGTTGCTGTACCAGGGATAACTAGCTGTAGGTTTgggtttgtgtttttactgcGTCGTTACTCGTCTTCATGGGACACGGAAACATGGACTGTCGATGATCTCAGAGACGACAGCTCAGCGGACATGTCTTAACGCGAGGACGAACACCCAGCTACGAAAGACCGTTTTTAGGTTCATTGTGTTTGTATTTCCTCTCATCCGTGAGTTTGTTCGACCtcgtgtgtctgtatgttaatGTCCGTTTTTTATACTATTCAGTTTCAGTTTAACTGTAAAGgaataaattgcaataaaatattaaaatggaaa
>XM_039816009.1
TGCTCTGTGATACAAAACCAGCATCCCTGTGCAGTACTGCGCCATCGCCAGTGACGTTAGGTTAGCCCGGTGGTTAGAAGCTAGTAGCCCGCTGCTCAGGGCATTTAGTACCCCTGAATCGCttgtgctaaaaaaaaagaaggacgATCTAAAGTAACGTATTTGACCGATTTTACCGAAAGCAAGACATTTTACTCGTAAAGGTCGCGTATAAATCGCGAGGGGCGAAGGTTCGAGACACCAGCCCAAACTGAACCCAGCCCACAGTGTCAAACATCAGACAGACGACAGCCCTGCACACAGACGCTATGGATCGTTCACCCACCACCGCCAGCCTGATGGCCGCCAGCAACGTCACCAACAAGACGGACCCGCGCTCCCTTAACTCCCGGGTCTTCATCGGCAACCTCAACACCCTGCTGGTCACCAAGGGCGATGTCGAGGCCATCTTCTCCAAATATGGCAAGATCGTGGGCTGCTCCATCCACAAAGGCTACGCCTTCGTCCAGTTCGCCAACGAGCGGAACGCCCGATCTGCCGTCGACGGCGAGGACGGGAGGATGATTGTCGGACAAGTGCTTGACATCAACCTGGCCGGAGAACCCAAACCACACAGGTCAAAAACAGGCAAACGCTCGGCTGGAGACATGTACAGTTCCTCGTTTGAACTCGACTACGACTTTCAGAGAGATTATTACGACCGAATGTACTCGTACCCGTCCCGTGTGCCcgctccccctcccccccccttgtCCCGGGCCGTGATCCCGTCCAAGCGGCCGCGGGTCAGCCTGAGCGGAGGAAGCAGCCGGCGAACCAAGAGCAGCTTCACCTCTTCCTCCAAGAGGACTTCCTCCTCCAGAACCATGAAAGTGGACGAGCTGCAGGCCGTCAAGCGGGAGTTGACCCAAATCAAAAGCAAAGTGGACGACCTGCTGGATAGCCTGGAGCGCATGGAGAAGGACCACGGCAAGAAGTCAGAAGCTAAGAGTGTAAAAACGGAGCCGGGCGAGGTGACTTCACCTCCGCACCCAAGCAACAAGGATGACGggtcaaagagagagagggagagccagGTGATCAACGACTCGGAGGACGACGACGACGATGGCGAGGATGAGGGAGAcctgctggaggaggaggaagagATGAAGAGTCAAGAGAGGGACGACGATATGgacgatgaggaggaggaaggcgaGCACGTGGAAGGTGACGACGATGGCGACAGCGTCAACGGCGAAGAGGTCTTGTAGGCACGGACCGCACCGGCCACGCATGCATCGTACACACAGCTTCCAGTAGGAACTCGGACTCCTGTTTTAACTCATGTTGTAGAGAcataaaaagaaacacacacacacacacacacacacacacacacacacacacgcaaacatgcaaacatgcacacacgcacacacgcaggcaggcaggcatggtgcacacacactgttgtCCCATTGTCCCTAAAGctgatttgtgtttattttggcCTGTTGTCCAGTGTTGCTGTACCAGGGATAACTAGCTGTAGGTTTgggtttgtgtttttactgcGTCGTTACTCGTCTTCATGGGACACGGAAACATGGACTGTCGATGATCTCAGAGACGACAGCTCAGCGGACATGTCTTAACGCGAGGACGAACACCCAGCTACGAAAGACCGTTTTTAGGTTCATTGTGTTTGTATTTCCTCTCATCCGTGAGTTTGTTCGACCtcgtgtgtctgtatgttaatGTCCGTTTTTTATACTATTCAGTTTCAGTTTAACTGTAAAGgaataaattgcaataaaatattaaaatggaaa

Function

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein C-like isoform X3

GO: NA

KEGG:

id description
K12884 HNRNPC; heterogeneous nuclear ribonucleoprotein C1/C2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816007.1 False 1813 mRNA 0.53 9 33181456 33191462
XM_039816008.1 False 1801 mRNA 0.53 9 33181456 33191453
XM_039816009.1 True 1817 mRNA 0.53 9 33181456 33191469

Neighbor

gene id symbol gene type direction distance location
si:ch211-284o19.8 NA coding downstream 205101 32967896 ~ 32976355 (-)
mettl17 mettl17 coding downstream 228502 32945384 ~ 32952954 (-)
nfatc4 nfatc4,LOC103367103 coding downstream 294499 32865946 ~ 32886957 (-)
pex19 pex19 coding downstream 340598 32833516 ~ 32840858 (-)
copa copa,LOC102794619 coding downstream 354136 32815848 ~ 32827320 (-)
LOC120568460 LOC101482682,LOC100703124,LOC102296331,LOC102790639,LOC103357352 coding upstream 11412 33202881 ~ 33204851 (-)
LOC120568969 NA coding upstream 65801 33257270 ~ 33270528 (-)
grk7a grk7,LOC104920904,LOC102788793,LOC103356827 coding upstream 113310 33304779 ~ 33312730 (-)
fbxo36b LOC100702589,LOC104964148 coding upstream 130421 33321890 ~ 33325637 (-)
LOC120567979 LOC103356688,LOC105925287,LOC106536587,LOC108244514,LOC104948911 coding upstream 134737 33326206 ~ 33337752 (-)
LOC120568465 NA non-coding downstream 4697 33172839 ~ 33176759 (-)
G119686 NA non-coding downstream 208453 32972675 ~ 32973003 (-)
LOC120568464 NA non-coding downstream 241296 32938701 ~ 32940160 (-)
G119593 NA non-coding downstream 420613 32760572 ~ 32760843 (-)
G119590 NA non-coding downstream 423804 32757210 ~ 32757652 (-)
G119847 atp1b3,LOC104945299 non-coding upstream 101291 33292760 ~ 33296161 (-)
G119852 NA non-coding upstream 142755 33334224 ~ 33334542 (-)
G119861 NA non-coding upstream 190285 33381754 ~ 33381998 (-)
G119881 NA non-coding upstream 308165 33499634 ~ 33499953 (-)
G119895 NA non-coding upstream 324324 33515793 ~ 33516158 (-)
zgc:66427 LOC103370245 other downstream 192897 32979206 ~ 32988559 (-)
G119631 LOC104961532,LOC101466547 other downstream 316182 32849719 ~ 32865274 (-)
LOC120567697 copa,LOC103137970 other downstream 348947 32828364 ~ 32832509 (-)
fcer1gl NA other downstream 416245 32760969 ~ 32765211 (-)
LOC120568568 NA other downstream 806938 32364461 ~ 32374518 (-)
LOC120568437 NA other upstream 25721 33217190 ~ 33256937 (-)
selenof selenof other upstream 229920 33421389 ~ 33433925 (-)
gfi1aa gfi1,LOC100698183,LOC101467858,LOC102203194,LOC102781835,LOC106958274 other upstream 453626 33645095 ~ 33649517 (-)
G119989 NA other upstream 462833 33654302 ~ 33659276 (-)
G120168 LOC105912833 other upstream 1037157 34228626 ~ 34229050 (-)

Expression


Co-expression Network