sdr39u1 (sdr39u1)


Basic Information

Item Value
gene id sdr39u1
gene name sdr39u1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32941206 ~ 32945386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816010.1
TGCCTGGTTACGGAACGTCTAGTGGTCCAAAAAGGCGAGAAACAACTGTACAGTCAGTCAAAAGAAAACGGTGAAACCTACAGCGACGTTCAGCTGTTAAATTcctgtttttcttcatttaacgACCATGAGAGTTTTAATAGGAGGGGGATCTGGCTTTGTGGGCCGTGAGCTGACTCGCCTGCTCAGAGACAGAGGTCATGAGGTCACAGTGATATCTCGCCAGTCTGGTCCGGGGAAGATAACATGGGGTGAGTTGGAGTCTCATGGCCTCCCACCATGCGAGGGCGCCGTCAATTTGGCTGGAGAGAATCTAATGAACCCGCTGCGATGGTGGAATGAAAGCTATAAAAAGGATTTGTTCTCCAGTCGTCTCGACACTACAAAATCTCTGGCTCAAGCCATTGCTGCTTCTCCCAGTCCTCCTCACTCCTGGGTCCTGGTAACAGGTGTAGCTTGTTACAAGCCCTGTCTGACAGCTGAGTATACAGAAGATAGTGAGTGGACACCATTTGACTTCCTCTCTAAACTTGTGAACGAGTGGGAGGCCTCTGCACTCCTTCCTGAGAATGTgacaaaaaccaccaaacaAGTTGTCATCAGGTCtgGGGCAGTATTGGGCCGCGATGGCGGTGCCATGAAGCAAATGCTGCTCCCCTTCTGGCTCGGCCTTGGGGGCACGCTGGGGTCAGGAAGACAGCCGTTTCCCTGGATCCACGTCTCTGACCTGGCAGGAATCATCGCCCACGCCCTGGAGCGCCCCGCTGAGTCGGACACTCCCTCCCCATCACCACAGGTGTTCAACGGGGTCGCGCCTGCGCTCAACACCAACCACGAGTTCACTAAAGAACTGGGCCGGATCCTGAAGAGGCCTACCATTTTCCCTGTGCCTGGCTTCGTCATGAACACCCTCATGGGCTCGGAGAGGGCCGTGGTCCTCATGCAGGGCCAGAAAGTCATACCAAAGAAGACTCTAGAGGCCGGATTTGAGTACAAGTATCCAGACTTGACCTCAGCCCTGAAAGAGATCGTTGAGAGTTAACCGATGTTGAAAGAATGCGTGCTGATTTAAGATTTTCTGGGATTGGGTGTTCATATTTGCTGGATTAtaagattttaaacaaatatgacagcTCAGAACTGAGGATCACACATGGGTCTAAAGACTGCTTGGAAAGTGTTTTTCATACCACATCAGACCAGTTTATGAATCCGTTTCTTTGAGACTTTGTTCATACTAAGCATTTAAATAGATCAGAGAAAATGAGACTCAATAGACAAACACAGTTGTGAGGGCATCCCTGTGTACATTTAGGGTGCACTGGGATCTGATTGTTCATGCATTGAAGGGCTACGTAGCACGACAAAAATGTCCAACTGTTAGACTTTGGAATTCTTTCAGTAAAGGGAAGATATTTATCCAGATGTCTGAAACGTAAAGTACTGAAACATACAGTAGGAAGCATCTTATTATAAATATCCCATTACTGTCCAAATTGCAAAAAATGGACTATGGTTTGTTAAAGATGGTGCACAATAAAGCTGGGTAAAGCACTTc

Function

symbol description
sdr39u1 Predicted to enable catalytic activity. Orthologous to human SDR39U1 (short chain dehydrogenase/reductase family 39U member 1).

NR:

description
epimerase family protein SDR39U1

GO: NA

KEGG:

id description
K07071 K07071; uncharacterized protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816010.1 True 1558 mRNA 0.48 6 32941206 32945386

Neighbor

gene id symbol gene type direction distance location
ltb4r2b NA coding upstream 2869 32929451 ~ 32938337 (+)
myadmb LOC104961532,LOC101466547 coding upstream 88809 32843099 ~ 32852397 (+)
LOC120568452 LOC103367094 coding upstream 219595 32716753 ~ 32721611 (+)
si:ch211-155e24.3 si:ch211-155e24.3,LOC108427093,LOC107549816,LOC107750208,LOC107671805 coding upstream 284349 32651304 ~ 32656857 (+)
LOC120568820 LOC101162955,LOC103374738 coding upstream 354857 32575313 ~ 32586349 (+)
parp2 parp2 coding downstream 7890 32953276 ~ 32973757 (+)
apol1 LOC106928621,LOC103148595,LOC106953189,LOC103370244 coding downstream 105619 33051005 ~ 33070053 (+)
LOC120567698 LOC107098800,LOC105889457,LOC102791798 coding downstream 130397 33075783 ~ 33126800 (+)
LOC120568455 NA coding downstream 181394 33126780 ~ 33180588 (+)
gk5 gk5 coding downstream 327731 33273117 ~ 33285466 (+)
G119640 NA non-coding upstream 43188 32897747 ~ 32898018 (+)
G119639 NA non-coding upstream 43738 32897115 ~ 32897468 (+)
G119638 NA non-coding upstream 44158 32896731 ~ 32897048 (+)
G119624 NA non-coding upstream 100393 32839004 ~ 32840813 (+)
G119623 pex19 non-coding upstream 103118 32837303 ~ 32838088 (+)
G119733 NA non-coding downstream 236070 33181456 ~ 33185892 (+)
G119744 NA non-coding downstream 247201 33192587 ~ 33193199 (+)
G119763 NA non-coding downstream 322984 33268370 ~ 33269202 (+)
G119767 NA non-coding downstream 344944 33290330 ~ 33290580 (+)
G119901 NA non-coding downstream 592786 33538172 ~ 33562071 (+)
G119585 NA other upstream 159735 32780988 ~ 32781471 (+)
G119584 vangl2,LOC102795188 other upstream 165524 32775074 ~ 32775682 (+)
G119582 vangl2,LOC103137974 other upstream 171354 32768707 ~ 32769852 (+)
LOC120568569 NA other upstream 469636 32452705 ~ 32471570 (+)
cadm3 cadm3 other upstream 714723 32128458 ~ 32226483 (+)
tep1 LOC104950563,LOC104941471 other downstream 43431 32988817 ~ 33049081 (+)
LOC120568463 NA other downstream 218530 33163916 ~ 33166100 (+)
G119769 grk7,LOC106528614,LOC104920904 other downstream 359436 33304822 ~ 33307864 (+)
pkn2a pkn2 other downstream 531950 33477336 ~ 33515424 (+)
gng12a gng12,LOC104920945,LOC104956611,LOC103354642 other downstream 865582 33810968 ~ 33851937 (+)

Expression


Co-expression Network