si:dkeyp-68b7.12 (arhgap30)


Basic Information

Item Value
gene id si:dkeyp-68b7.12
gene name arhgap30
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32629442 ~ 32647388 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816022.1
TCTATATGTTCAGGCTTAAAGAGTGCTCGACTTCCGCTGCAGTGAAAAAAGTGGGGCCGCAATGGCCGTGGCATGCAGGCAGGAAGCAGAGACCGGGCCTGGGCTGAACTCAGTCCTCAGGCCGGAGCTGAGAATGGACGTTTAGGTGGGTCCACCAGCACACAGAGACAGTATGGTGTGATTGGAGTGAAACATTCTGAGGTACACTTCCCTGAATAGGAGAAGTACAGAGGCAAGGGTGTGGCCTTTCATTCGAAAATAAATTACGTTCATCAGGGGGGAAGTAGACAGCCACATAGGCACGCTGAGGATTCAGAGCAGATTGTCGTTTGATTCTGGGGGAGATTTTGGTCCGCAACCTGAAGCTGGTGTTTGCAGAATGAGATTTGTTATTTCTGCTTTTCGCAGGGTGGACGATAACCTAAAGTATGTCCAAACGCTCCAGCTTTAACGTATGAACTCCAAATGGAATGCAGCCTATAGAGGAAACAACCTGCACCCAACAACATGCACTGAGGCAAGGGagccagaagcagcagcagcagcacggtCAAATCTGTGAAATGTGCAGGGCCTCTACGAAGTCATTATCTCATTAACCGAGTGGGGCAACACATCCAGcagccacacagacagacagacagacagacagtcaggcaGTCTGACGGTCACAAACAGAGCAGCTCGGGCCGGTCTGAATGTGAGGTGAAACTGCAGACGGGTAGAGATGCGGAGAGTTCGAAGAAAAGGAGGGAACAAAGACAAGGTGTTTGGATGTGATCTGCTGGAGCACCTGGCTGCCTCCAATCAAGAGATTCCTCAGGTCTTGCAATACTGCAGTGAATTTGTTGAGAAACAGGGAATCGTGGATGGCATCTACAGGTTGTCTGGAGTGTCGTCCAACATACAGAAACTAAGGGGTGAGTTTGAGAGCGAGGGGACTCCAGATCTGCACAAGGATGTGTACCTGCAGGACATCCACTGTGTCAGCTCTCTGTGTAAAGCTTACTTCAGAGAGCTGCCCAACCCTCTGCTCACATACCAGCTGTACGACAAGTTTGCGGAGGCTGTGGCCATCCAGCTGGAGGAGGACAGGCTGGTAAAGATCCGAGATGTGCTGCAAGAACTACCGGCACCACATTACAGGACTCTGGAGTTTCTGATGCGCCATCTTGTCAGAATGGCCTCTTATTGCTCAGAGACCAACATGCACTCCAGGAACTTGGCCATCGTCTGGGCCCCCAATCTGCTCAGGTCCAAGGACATTGAGGCGTCTGGGTTTAACGGTACAGCAGCCTTCATGGAGGTCAGGGTTCAGTCCATCGTGGTGGAGTTCATCCTTAACCACGTCCCTCAGCTGTTTCCTGAACAAGGTGCATCAAACGAGAGAAGAAAGTCCCTCCCCTCCCCGTCAGCGATTTCCAATCAGGAGGAAGGGTTTTTCAAGTCCTCTTCTATGAAGCCTCTCCACAACTTTGGTAATATCAGTCCAGGAGACGGTCCTCTAGCCATGAGACCTTACCACTCCATCATCGAAGGCACTGACAAGAGGAAAGGATCTCTCAAAGGCAGGAAGTGGATGTCCATCTTCAACATCGGGGGGCGGTTCCAGGACAACCGGCGGAGGCACAAACACTCAGCCAAAGAGAAAGACAGGCCTGCTTTGAGACCGGCAAGAAGCATGGACTCCCTCAGCACCCCACCCTATCCAAACGAAGTTTCCAGACGTACCGGGCAGCGCCCTCCATCCACCAACTTGTCTCCCCTggtcaccccctcccccaactcTGGCTCTGAGGTCACACCATCCGCCGGCGCGATCGGTGGCAGTGAATATGCCGTGACGTACCGCAGGGGAACAGGGTTAGTGAGCGGGGGTTCGGGGACCCAGGGCACCTACACTTCCTTTGGCTCCGAAGGTTTGGGAGTCACAGGCAACAAGACTCAGTCCAGATCCCCGGGACTCTCCACTAAAGTGGGCCGAAGAGCAGCCATGCACATCACAGGGCCCACCACGGTCACTGTGCCCCTTCACATCACCTCCAACCTGGCATTAGGGGTGCTGCAGGGGGGCGGGGGCGACAGGGTCATCCACCGGGGCAGGGATAAGGATGCAGGGGACAGggtggaagggagggagggaggagagaaggtgGAGAGGAGTGAAAGCAGAGGAATGGAAAAGAAGGTGGAAGAGAGCAGAAAGgttgaggaagaggagaagaattCCAGTGAGAAAGTGACAGGCAAGAAAGGAGTGGCGGAAGCAGCATGGAATACAGTGGCAGGTGGTGGTGGGGAGGAAGAACGGGAAGtacagaaagaggaggaggagaaggaggaagaggaggaggaagtcaGAGAAGAATGTAGCTGCAAGCCAGAGCTGGAAGATGTGCCCAGAGAGGAACAAGCCTCCAACACCGAGGAAGATACTGCTGTTGGTGATGACAAGGATGGTGACGACTACATGGTCTTAGACCGTGCTTCATTTCCAGAAATGAAAGGGCTGAACCCAGCTGATTGTGAGCCAGTGGTGACTCCGCCTGCTGGAGACTGTGTGTTTGACACGTCTGACGTCCACAACTCCACTGCGGTGGAGGGGGACGACCAGGAGATGTCGGGCTACGTTCAAGATAACTTTGAATTCCTGGACCAAATGGACTGCATGGACAGCAGTGTCTCctaccagGTGACCGAGTTCTCCGTTGAACCTCCCGGATACTCAGATGATGAGTATGAAGTGATGGTGCAAGCGCGGCCTTCCAGTCATCctgcagagctgcagacagTCCTGCCACCAGCTCCTCAAACACGAACCCAGAGCCAGGCAGAGTTAAATCCGCACAGGCCGCTCAGCCTCGACTTACACAACCGACACACTAAATCCCTCAGCCTGCCGTACATGACCTCCCCCATCCACGGGCCGGAGGAGTCCTGCtctgaagaggaggctgcagtggAGGACAGCGATGACAACGATTTCAGCAGCGAGGAAGACGACAGCATGTTTGTTAAAAGCCTTCCCCCTGATTTCTTCTTAAAGAATTTGAGCTTTGAACCAGACACTCACGAACAGGACAGATGCACTCTAGATGGAGTTCCTGCACATCAATCCCAGAGCTCTGCGGACAGAGGATGCCAGTCACTGAACTTTGCATTTTCTGCACGTGAAGAATCAACTGTTGGAGATCTGGAGCAGGTGGAAGGGAAAGATAAGGGAGAAGATGATGCGCTGCAAGAAAAGGAGATAACAAAGAAGGAAGAGGAAGCTCACTGGGGAAGAGAGCAACTGGAAAAAAATAGGCAAAGGGAAGCGACAGAGGAAGTTGTCATGGAAGACCCTCCGAGTGACAAAGAACAACCTCTCACTCCAGAGGCATCGACGCACTGCTGCGAAGACTTCCCACTCCCGAGCGATGACGAATCAAGCACCGTTGCCGACCTAAaggcggaggaggaggaggaggcggacgTGTTTGACAATCATCGCAACGATTACCCACCTCGTCACGACGTCCCGGAAGAAACCAATGACATTTCTTTAGAGGAGAACGGAGACTTTTCTGTAAGGGCAACAGAGCAGCCCCAAACCTGTGATACCAAAGAGGGAGACGGGGATGAGGGCGAGGACAGGGAGGTGTacaaagagacagaggacaTATGTCAAGGAATGGTTCTGGAAATAAAAGAAAGGGATGATGACATGTGGGAAGAAACCACTGAGGGGGGCATTGAAGTGATAGCTGAAGAAAAACATGAAGAAATGATGCAGGGAGGCGACACAGAGCATGATGGTGCAATTTGTAGGACAGGCGGGGACATTTGGGTTGAACTTGAGGATGTTGTATGTGAATTGATAGAGGATAAGGAAAGCAAGCAGGTCGAGGCGAAGGGTGCAAGAGAAAGTGTCGGTGGGGAGGGAGACACGATCGGCGATGTCAGAGTcggagaagaggaagagcaggTAGCAGAGGTTTCAGGAGAGGGAACGGTGGAAGTGGAAGTGGAAGTGGAAGTGGACGAAGAAGAGACGAACGAGACAGAAGTTAGAGAAGAGGTGGCGGAGGAATCAATGGAGACGGATGAGGAAACGCTCACAGACGCAGAGATGCAGCAGGAGTTGGGGGAACAAGAGACAAACGGAGGACTTACAGAGACATGTGAACCAGAAGAAGCCATTCACGGGAAGCATGTCGTGAATGAGGAAGCCCAGCAGCACGACAGAGTGGACAAAGAGAACCATGACAAAGAGAGAGCCGACGAGCAACGTAGAACACCGCCAAGTGTGGACAAACGGCTGAAAGAGGTGAGGCGCGATGTGAAGGAGTTCAAAGAGGGCAGAAAGTGCGAGGAAAGTGCCAGCAGCCAAGGAGGAGTGGGAAGGAAGCTGGTCATCTCCAAAAACCCGAGGGTCTACCAAGTAAAAGCCGTGCCGGTCGTGCCCCCGAAGCCGCAGCACTGCAAAATCACCGCCCTGACCatgcggcagcagcagcagcaaagagACGccgacagagagagggaaaacaCGGCCAGAGTCCCGGCGGAGCAGGGCAGAGGGTGCGAGGGAGACGGCGAAGACGACGGCGGGGGGAGAAAGGAGCAGCCGACACTCAGGGgaggggagaaaggagagagggacaggagaAGGGACGGAGAGGAAAGGGACGCGAGGGACACAAGCACAAACAGCCCCCTCAGCATGTGTTTCGATGAGGCAGTTGCCATAGCAACCATGAGGcgagggaaagagaaagagtgcgagaaagagaaggagaggcaGAGGGATTGGGCAAATGAAGTACAGTAGTagagtgtttttttgtgtctgtatatTGATATAAAGTGATTTGACTGTACAAACTATTTTTGTAGCATAATgggctgtattttattttccaatACTGAGGATGTATTACCCTATTCTTGATGCAATGCTAGCCTACTAAAGATGTTAAggtgagttttattttttacaacacGCAAACTTGACATGCAGCCAAGAAACTAgtagttttaaaatatatattttttggggggggaggattttattattttattattcagaGAACGGTATAGAGCTGACATGAAATTATTTGGGGGACGACGTGGTAACTCGAATGATACCATTACAATAGCTGCAATTGTGCTTCCTGATATTTAGTTTaataaaactgaaactgaaagcaAACCCAGATGTTGCTGCTGAAACATGGTGAGGATAAAAGTATGCATGTGTGCCCAGAACTAGGTCTGTAAAAACGTTCACACCCCACTCCATTTTgatcaaaagtaaaaaaagattaGTCTCGAATCTAGCTAACAAAACAATCTAGCACTCAAGTATATAGTTAAAGATTTTCAGAGCAGAGATGATGAATCGAATGTAGCATTTATGATGAACATATAATGTCTGCAGAAGTCAAAGTATTTTTTTGGTTATGTGAATAAAAAGATGTTTCCAAGATa

Function

symbol description
arhgap30 Predicted to enable GTPase activator activity. Predicted to be involved in small GTPase mediated signal transduction. Located in intracellular membrane-bounded organelle.

NR:

description
uncharacterized protein LOC109874735

GO: NA

KEGG:

id description
K20645 ARHGAP30; Rho GTPase-activating protein 30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816022.1 True 5472 mRNA 0.51 14 32629442 32647388

Neighbor

gene id symbol gene type direction distance location
LOC120568450 NA coding downstream 6351 32618046 ~ 32623091 (-)
LOC120568440 NA coding downstream 14544 32603143 ~ 32614898 (-)
LOC120568447 NA coding downstream 28986 32594658 ~ 32600456 (-)
LOC120568564 kcnj10,LOC100694690,LOC101485288 coding downstream 73753 32538197 ~ 32555689 (-)
LOC120568566 NA coding downstream 91351 32524542 ~ 32538091 (-)
tesk2 tesk2,LOC100707995,LOC102795977,LOC102307376,LOC102211946 coding upstream 12147 32659535 ~ 32713327 (-)
nectin4b NA coding upstream 77412 32724800 ~ 32754122 (-)
LOC120568446 vangl2 coding upstream 121207 32768595 ~ 32793782 (-)
ncstn ncstn coding upstream 148709 32796097 ~ 32815490 (-)
copa copa,LOC102794619 coding upstream 168460 32815848 ~ 32827320 (-)
G119567 NA non-coding downstream 35398 32593374 ~ 32594044 (-)
G119528 NA non-coding downstream 58760 32569997 ~ 32570682 (-)
G119523 NA non-coding downstream 63051 32565972 ~ 32566391 (-)
G119492 NA non-coding downstream 175394 32438827 ~ 32454048 (-)
G119482 NA non-coding downstream 210447 32417963 ~ 32418995 (-)
G119570 NA non-coding upstream 2301 32649689 ~ 32649976 (-)
G119590 NA non-coding upstream 109822 32757210 ~ 32757652 (-)
G119593 NA non-coding upstream 113184 32760572 ~ 32760843 (-)
LOC120568464 NA non-coding upstream 291313 32938701 ~ 32940160 (-)
G119686 NA non-coding upstream 325287 32972675 ~ 32973003 (-)
LOC120568568 NA other downstream 254924 32364461 ~ 32374518 (-)
G119465 cadm3,LOC106600493 other downstream 403082 32216502 ~ 32226360 (-)
G119379 NA other downstream 578003 32047477 ~ 32051439 (-)
zeb1a LOC103364416,LOC100701828,LOC102292734,LOC101079552 other downstream 1054249 31469595 ~ 31575193 (-)
LOC120568745 NA other downstream 1172285 31455599 ~ 31457157 (-)
fcer1gl NA other upstream 113581 32760969 ~ 32765211 (-)
LOC120567697 copa,LOC103137970 other upstream 180976 32828364 ~ 32832509 (-)
G119631 LOC104961532,LOC101466547 other upstream 202331 32849719 ~ 32865274 (-)
zgc:66427 LOC103370245 other upstream 331818 32979206 ~ 32988559 (-)
LOC120568437 NA other upstream 569802 33217190 ~ 33256937 (-)

Expression


Co-expression Network