lamc1 (lamc1,LOC103398751)


Basic Information

Item Value
gene id lamc1
gene name lamc1,LOC103398751
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2518851 ~ 2601477 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816091.1
ATGTCTGCAGGCAAAGCCTTCGACATCACCTACGTGCGCCTGAAGTTCCACACCAGCCGCCCGGAGAGCTTCGCCATCTACAAGCGCAGCCGCGAGGGGGGCCCCTGGGTGCCCTACCAGTACTACAGCGGCTCCTGCGAGAAGACCTACCGGAAGAACAGCCGCGGCTTCATCCGCACCGGAGAGGACGAGCAGCAGGCGCTCTGCACCGACGACTTCAGCGACATCTCGCCGCTCACCGGAGGGAACGTGGCCTTCTCCACGCTGGAGGGGAGGCCCAGCGCCTACAACTTCGACAACAGCCCCGTCCtgcagGACTGGGTGACGGCCACCGACATCAGAGTGACCCTGAACAGGCTCAACACGTTCGGAGACGAGGTTTTCAACGACCCCAAGGTCCTCAAGTCCTACTACTACGCCATCTCGGACTTCGCTGTGGGAGGAAGgTGTAAGTGTAACGGCCACGCCAGCGAGTGTGTGAAGAACGGCGGAGGGCGCCTGGTGTGTAACTGCAAACACGACACGGACGGAGACGACTGCGGCGTCTGCAAACCGTTCTACAACGACCGGCCGTGGAGGAGAGCCACCGCCGACAACGCCAACGAGTGTCTGCCGTGCGACTGTAACGGGAAAAGCGGCGAGTGTTTCTTCGACGGCGAGCTGTACCGCGCCACGGGCCACGGCGGCCACTGCAGGAACTGCGCCGACAACACGGACGGGCCCAACTGTGAGCGTTGCCTCGACAACTACTACAGGGAGGGGGGCAGCAGCCGCTGCCTGGCCTGCAGCTGCAACACAGTCGgctcCGAGTCTCCCCAGTGTGACAGCAGAGGAGCGTGTGCGTGTAAACCCGGCGTGGGCGGAGAGAAGTGCGACCGCTGCCAGCCAGGATTCCACAGCCTGACCGAGGCCGGCTGCAGaccGTGTTCGTGCTCGCCGTCTGGCAGCACTCAGGAGTGTGACGTCAACACGGGACAGTGTCGCTGCAAAGACCACGTGGAGGGTTTCAGCTgtgacagGTGTAAGCTGGGCTACTTCAACCTGGAGCCCAGCAACCCCCAGGGCTGCACCGCCTGCTTCTGCTTCCAGCACTCGTCTGTGTGCGACAGCGCCGAGGGCTTCAGCGTGCACGCCATCAGCTCGGCCTtccacacagatgcCGAGCAGTGGACCGGTCAGCAGCGGGATGGATCCAGTGTCCCCGTCCAGTGGTCTCCCAGCGGACAGGAGATCTCCCTCATCTCGGACGACTACTTCCCCATGTACTTCGTAGCCCCAgAGAAGTTCCTGGGGAACCAGCTGCTGAGTTACGGGCAGAACCTGAGCCTGAGTTTCCGCGTGGACCGTCGGGACACTCGGCTGTCGGCGGAGGACCTGGTGCTGGAGGGGTCCGGCCTGAGGGTGGCCGTCCCTCTCATCGCCCAGGGCAACGCCTACCCCAACGAGAACATGCAGACATACGTGTTCAGGCTCCACGACAGCACCGACTACCCCTGGAGGCCGACCATCAGCCACGCTGACTTCCAGAAACTTCTCCACAACCTGACAGCAGTCAAGATCCGAGGCACCTACAGCGAGAAGAGTGCCGGTTACCTCGACAACGTCTCCTTGGTGACGGCGAGGCGAGGTCCGGGTGCTCCGGCGCGCTGGGTGGAGCGCTGCACCTGTCCTCAGGGTTACCAGGGGCAACACTGCgagcagtgcatgctgggataccGCCGCGCCCGTCAGGAGCTCGGAGCCTTCAGCGCCTGTGAGCCGTGCAACTGTAACGGACACAGCGAAGCCTGCAACCCAGACTCAGGTGCGTGCGACTGTCGGGACAACACGGCCGGTCTGAGCTGCGAGCGCTGTAAAGACGGTTTCTATGGCGACGCCACCCACGGGTCGTCAGGTGACTGTCAGCCCTGTCCCTGTCCAACCGGAGCGACCTGCGCCGTCGTCCCCAAAACCAGAGAGGTGGTCTGCACCAACTGTCCCGCAGGGaccacaggtaagCGCTGCGAGCTGTGTGACGATGGTTTCTTCGGTGACCCTCTGGGTCAGAGCGGTCCGGTCCGAGCCTGCCGCGCCTGCAAGTGCAGCGACAACATTGACCCCAACGCCGTCGGCAACTGTAACCGGGAGACGGGCGAGTGCCTCAAGTGCATCCACAACACGGACGGCTTCTTCTGCGACCGCTGCATGGAGGGTTTCTACGGCAACGCCCTGGCCGCCAACGTCGCCGACAAGTGCAAATCGTGCTCGTGCTCGCCGCTCGGCACCGTGGGTCGGCAGACCGGCTGTTCCCAGGTCACCGGCCAGTGTCCCTGTCTCCCCAACGTGGCGGAGCGAGACTGCAGCGCCTGCCAGCCCGGCTTCTTCAACCTGCAGAGCGCCGCCGGCTGCGAACGCTGCAACTGCAACCCGATTGGCTCTACCAACGGTCAGTGTGACATCAGCTCCGGTCAGTGCGAGTGCCAGCCCGGCGTCACCGGCCTGCACTGCCAACGCTGCGAGGCCAACTTCTTCGGCTTCGGCTCGTCCGGATGCAAACCGTGCGACTGTGACCCCGAGGGCTCCGTGTCCGGCCAGTGTAAAGAGGACGGCCGCTGCGAGTGTCGTCCCGGCTTCGTCGGCGCTCGCTGCGACATGTGCGAGGAGAATTACTTCTACAACCGCTCGGCTCCGGGCTGCCAGCAGTGCCCGTCCTGCTACAGTCTGGTCAGAGACaaggtGAACCAGCAGAGGCAGAAGCTCCACGAGCTGCAGACTCTGATAGATAACCTGGGCTCGGGCCAGGACACGGTCAGCGATAAAGCCTTCGAGGACCGGCTGAAGGAGGCCGAGAGAGCCATCATGGAGCTGCTGGAGGAGGCGCAGACCAGCAAAGACGTGGACCGCGGCCTACTGGATCGCCTGAACGCCATCAACAGCACTCTGACCACTCAGTGGAACCGTCTGCAGAACATCCGCAGCACGGTGGACGACACGGGCACGCAGGCCGACCGCGCTCGCCACCGCGTCCGCGACGCCGAGGGCCTGATCGACCGCGCACGCCAGGAGCTGGACAAGGCCAAGGACGCCATCGGCAAAGTGGATATCAAGCCTCCCAGCGGCACCGGAGACCCAAACAACATGACGCTGCTGGCTGAGGAGGCTCGCACGCTGGCCGATAAgCACAAGATGGACGCCGACCAGATCGAGACGATCGCCAGAGACGCCAACGACACGTCCACCAAAGCGTACAACCTGCTGCTGAAGACTCTGGACGGAGAGGGCAAGACAAGCCAGGACATCGACGAGCTCAACAAGAAGTACAACGAGGCGAAGGAGCTGGCCAAGAATCTGGAGAAACAGGCCAACAAGGTTCAGGCGGAGGCGGAAGATGCCGGAAACCAAGCTCTGAAGATCTTGGCCAACCTGACCAGCGTGCCGACGTTCAACACCAAAGCTCTGGAGgatgAAGCCAGTAAGATCAAGAAGGAGGCGTCTGACCTCGACACGCTCATCGACAAAACGGAGAAGGCGTACAACGAGCTGAGAGACGACCTGAAGGGCAAAGAGCAGGAAGTGCGCAAACTGCTGGAGAAAGGCAGGAGTGAGCAGCAGACTGCGGATCAGCTGTTGGCTCGAGTCGACGCCGCCAAAGCTCTGGCTGAGGAGGCGGCCAAGAAGGGCCAGTCCACGTTTAAGGAGGCAGAGAACATCCTGGAAGATCTGAgagACTTTGACAAGAGAGTCAACGACAACAAGACGGCGGCCGAGGACGCCCTGAAGAAGATCCCCGCCATCAACGCCACCATCGCCGCCGCCAACCAGAAGACCAAGCAGGCCGAGGCGGCGCTCGGCAACGCCGCCGCCGACGCCCGGGAGGCCAAGAACAAGGCCGAGGAGGCGGAGAAGATCGCCAGCAACGTGCAGAAGGGCTCGGCCAAGACGAAGGAGGACGCAGAGAAAGCCTTCCAGGAAACTAACACGCTGGACAACGAGGTGGACGATATGTTGGATCAGCTGGATGGCGCAGAGGAGCAGCTGGCTCGCAAGAAGGCCGAGGCCGACCGCGACATGATGATGGCAGTAATGGCGTCGGACAACGCGAAGGAGGCCGAGGATAACGCCCGCAAGGCCAAGAGCGCCGTGAAGACGGTGCTGGGCACCATCACTGCCCTGCTGGAGCAGCTGGGAAACATCGACAAGGTGGACCTGAGCAAGCTGAACCAGATCGACGAGTCCCTGAAGAGGGCGCGGGGCCAGATGGGCGACAGCAAGCTGGACATGAAGCTGACGGAGCTGAACGACGTGGCGCGCACCCAGGAGGACATGATCAACCACTACGACCGGCAGATCCGCGAGATCCGCGCCGATATCGACAATCTCAACGACATCAAGAACACGTTACCCAACGGCTGCTTCAACACTCCGTCTCTGGAGCGGCCATAACCACGCTTtcaccttcctcctcttcctcttcctcctccatcacTCCCTTCTTCACATCTAACACTCTGGCACACATGCCGACTCTTTACCAAAACAGTTCTTTTGTTCTCagatttcttgtcttt

Function

symbol description
lamc1 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within several processes, including animal organ development; detection of light stimulus involved in visual perception; and retinal ganglion cell axon guidance. Predicted to be located in extracellular region. Predicted to be active in basement membrane. Is expressed in several structures, including central nervous system; eye; median fin fold; musculature system; and optic cup. Orthologous to human LAMC1 (laminin subunit gamma 1).

NR:

description
laminin subunit gamma-1-like

GO:

id name namespace
GO:0050908 detection of light stimulus involved in visual perception biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0007634 optokinetic behavior biological_process

KEGG:

id description
K05635 LAMC1; laminin, gamma 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816091.1 True 4547 mRNA 0.62 28 2518851 2601477

Neighbor

gene id symbol gene type direction distance location
LOC120568497 NA coding downstream 754706 1756621 ~ 1764145 (-)
LOC120567872 NA coding downstream 1083576 1433235 ~ 1435275 (-)
LOC120568025 LOC103365692,LOC101173737 coding downstream 1090537 1415156 ~ 1428314 (-)
sft2d3 sft2d3 coding downstream 1313310 1203988 ~ 1205541 (-)
LOC120568681 LOC102798692,LOC102306166,LOC101470701,LOC102196346 coding downstream 1382300 1120371 ~ 1136551 (-)
smg7 smg7 coding upstream 24361 2625838 ~ 2662765 (-)
lamc2 NA coding upstream 101882 2703359 ~ 2728546 (-)
LOC120568009 NA coding upstream 248548 2850025 ~ 2852388 (-)
LOC120568013 NA coding upstream 253446 2854923 ~ 2857623 (-)
LOC120568010 NA coding upstream 258097 2859574 ~ 2863734 (-)
G111561 NA non-coding downstream 88157 2429925 ~ 2430694 (-)
G111369 NA non-coding downstream 179371 2337471 ~ 2339480 (-)
G111354 LOC108267897 non-coding downstream 276636 2241979 ~ 2242215 (-)
G111339 NA non-coding downstream 398523 2113915 ~ 2120328 (-)
G111337 NA non-coding downstream 436418 2076124 ~ 2082433 (-)
G111577 NA non-coding upstream 14713 2616190 ~ 2618712 (-)
G111600 NA non-coding upstream 64380 2665857 ~ 2673093 (-)
G111589 NA non-coding upstream 129633 2731110 ~ 2809091 (-)
G111579 NA non-coding upstream 131075 2732552 ~ 2750754 (-)
G111609 NA non-coding upstream 136871 2738348 ~ 2751777 (-)
LOC120567903 NA other downstream 113758 2341462 ~ 2405093 (-)
LOC120567890 NA other downstream 775012 1743300 ~ 1743839 (-)
G111226 NA other downstream 1100892 1412956 ~ 1417959 (-)
LOC120568022 NA other downstream 1109323 1391808 ~ 1409528 (-)
dhx9 dhx9 other downstream 1128313 1353022 ~ 1390538 (-)
LOC120568519 dlg1,LOC106568684,LOC105023059 other upstream 296738 2898215 ~ 3142454 (-)
LOC120568005 NA other upstream 602810 3204287 ~ 3229147 (-)
LOC120568520 LOC101465856,LOC102211951,LOC102296991,LOC100703857,LOC103352978,LOC102799200 other upstream 713169 3314646 ~ 3371775 (-)
LOC120569104 NA other upstream 843923 3445400 ~ 3456534 (-)
G111942 NA other upstream 903021 3504498 ~ 4036963 (-)

Expression


Co-expression Network