scp2a (scp2)


Basic Information

Item Value
gene id scp2a
gene name scp2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14626167 ~ 14651376 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816099.1
ATTCCGTTGATTTAGACTAGCTAGGTGGATCCTGTCGGTGCTACTGCTTTCTACAGACCTGACTGGCTCTGTATggacctgctgctgctgaagaacAACAACCATGGCGCTGACCAGGAAGAGCAGGGTGTTTGTCGTCGGCGTGGGCATGACAAAGTTTGACAAGCCTGGAGCCCGAGGCGACTATGATTACCCTGACATGGCCAAGGAAGCAGGTCAAAAGGCCCTAGCAGATGCAGGTGTCCCATATTCTGCCATTGAACAAGCCTGTGTAGGATACGTCTATGGTGACTCCACTTGTGGGCAGAGGGCCATTTACCATAGCCTGGGCCTCACCGGGATCCCCATCATCAACGTCAACAACAACTGCTCCACAGGCTCCACTGCACTCTTCATGGCTCGCCAGCTCGTTCTGGGAGGTCTTGCTGACTGTGTGCTTGCCCTCGGGTTTGAGAAGATGGAGAAGGGCTCTTTATCCTCAAAGTTTATGGACAGGACCAATCCCATGGACAAGCACTTTGAGGTGATGATCAACCGCTACGGGATGGCGGCAGCTCCAGCAGCACCACAGATGTTCGGCAACGCTGGCAGGGAGCACATGGAGAAATATGGCACTAAACCGGAACACTTTGCCAAAATTGCCTGGAAAAACCACAAGCATTCCACCAACAACCCGTATTCCCAGTTCCAGGATGAGTACAGTTTGGAGCAGGTGATTAACTCCAGGAAGGTGTTTGACTTCCTTACTCTGCTGCAGTGTTGCCCTACATCAGATGGTGCCGGAGCAGCAGTTTTGGCCAGCGAAGCCTTCGTCAGGAAACACCATCTGGAGAACCAGGCGGTGGAGATTGTGGCCCAAGAGATGGTGACTGACCTTGCCTCCACGTTTGAAGAAAACAGCTGCATTAAGATGGTGGGATATGACATGTCTCAGTCGGCTGCCAAAAAGTGTTATGAAGCTGCAGGTCTGAAGCCCTGTGATGTCGATGTGGTCGAGCTGCATGACTGCTTCTCAGCCAATGAGCTCATCACGTATGAGGCTCTGGGGCTGTGTCCAGAGGGTAAAGCAGGAGAGATGATTGACAGAGGGGACAACACATATGGAGGCAGGTTTGTTGTCAACCCCAGTGGTGGTCTCATCTCTAAAGGACATCCTCTGGGCGCCACAGgTCTGGCCCAGTGTGCAGAGCTGTGCTGGCAGCTCCGAGGGCAGGCAGACAGGAGACAGGTCCCAGGGGCAAAAGTGGCCTTGCAACACAACATTGGCTTAGGAGGAGCTGTGGTTGTTACTCTTTACAGGTTGGGATTCCCTCAGGAGGCCAGttcccacatagGTGCAGTTCCCACCAGCTCAGTCAACGGTCTGGATGGGTTTAAAGCTTACCCTGTCTTCAAAGAGATAGAAAAACGTCTACAGGAGGAAGGAGAGCAGCTTGTCAAGAAGATTGGTGGAGTGTTTGCCTTTAAAGTGAAGGACGGACCAGATGGGAAAGAGGCGACCTGGGTCGTAGATGTGAAAAATGGCAAAGGTTCTGTCACCAGTGATCCAGgtaAAAAGGCAGACTGCACCTTATCCATGAGTGACGGCGATATTCTGGATCTGATGACAGGAAAGTTGAACCCACAAACGGCGTTCTTCAAAGGGAAACTGAAGATCACTGGGAACATGGGCATAGCTATGAAGCTGCAGAACCTGCAGTTTACACCAGGCAAGGCCAAGCTGTGAGACTCTTAGCTAACGTTTTGTCCTCTGAGCAGCACTTAAAGGACAACTTAATTCCTCCTAATCAACAAGCTCATTGAATACTTTGATAATGCGTTTGATCTTGAGAGACGATCCATACAGTGTCAATTTCAGCTGCTACTTTGATATCAGATCACACTTACCGCATAGTATATACATAATTGTTAATATCCTGGTATATATTGTTTAATCTCCTTGACCCATCACCTTTTAATTCTGATATAATTTCTGAAACATCCGGTCTTTAGGAGCTGCTTGCTCATATGCAACATCAGTGCAAATTTGAAAAACATGTGGCGCTCCTCCGTGTTTGATAAATCATGTAGTTAAAACATTCAATGTGCCTCTAATTTCTGTCTATAAAATTCAACTCATGGTTTAAAGCCATTTTTGGCCTCAACCATTTTGATAGATCATTTTGTATAGAATATATGTCTGTAAATGATAGGAATtatctaataaataaaaaaaatccttcactGACAATAA

Function

symbol description
scp2 Enables several functions, including cholesterol binding activity; lipid transfer activity; and long-chain fatty acyl-CoA binding activity. Involved in several processes, including inositol trisphosphate biosynthetic process; lipid transport; and progesterone biosynthetic process. Located in nucleoplasm and peroxisome. Part of protein-containing complex. Biomarker of Zellweger syndrome.

NR:

description
non-specific lipid-transfer protein

GO: NA

KEGG:

id description
K08764 SCP2, SCPX; sterol carrier protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816099.1 True 2233 mRNA 0.48 16 14626167 14651376

Neighbor

gene id symbol gene type direction distance location
LOC120567803 LOC104934906,LOC103364073,LOC103479012 coding downstream 61462 14561507 ~ 14564705 (-)
LOC120567737 NA coding downstream 72498 14551037 ~ 14553669 (-)
LOC120568348 lrp8 coding downstream 88702 14461472 ~ 14537465 (-)
LOC120568914 LOC104950559 coding downstream 189961 14430089 ~ 14436206 (-)
LOC120567626 LOC103364420,LOC104948953 coding downstream 196609 14422482 ~ 14429558 (-)
czib LOC103363808,LOC100704007 coding upstream 2032 14653408 ~ 14658272 (-)
uck2b LOC104935075,LOC103363741,LOC102787436,LOC100703739,LOC101481213 coding upstream 7496 14658872 ~ 14667205 (-)
zte38 LOC104949683 coding upstream 23041 14674417 ~ 14677944 (-)
prdx1 prdx1,LOC103140020 coding upstream 28031 14679407 ~ 14683559 (-)
gpbp1l1 gpbp1l1 coding upstream 43073 14694449 ~ 14708330 (-)
G114544 NA non-coding downstream 108274 14517476 ~ 14517893 (-)
G114530 NA non-coding downstream 159919 14418851 ~ 14466248 (-)
G114538 LOC104949927,LOC103364340 non-coding downstream 178234 14440881 ~ 14447933 (-)
G114518 NA non-coding downstream 305404 14319343 ~ 14320763 (-)
LOC120568036 NA non-coding downstream 454693 14124703 ~ 14171474 (-)
G114633 NA non-coding upstream 38081 14689457 ~ 14690066 (-)
G114636 NA non-coding upstream 42256 14693632 ~ 14693957 (-)
G114661 NA non-coding upstream 99869 14751245 ~ 14751528 (-)
LOC120569096 NA non-coding upstream 128900 14780276 ~ 14782472 (-)
LOC120568695 NA non-coding upstream 303202 14954578 ~ 14958403 (-)
LOC120568687 NA other downstream 7943 14613613 ~ 14618224 (-)
tfr1a NA other downstream 657356 13949871 ~ 13968811 (-)
dis3l2 dis3l2 other downstream 1143942 13469531 ~ 13482225 (-)
G114152 NA other downstream 1537604 13084561 ~ 13088563 (-)
LOC120568578 wdr48 other downstream 1650839 12966466 ~ 12975328 (-)
G114680 NA other upstream 144542 14795918 ~ 14797044 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other upstream 638706 15290082 ~ 15304610 (-)
G115164 btf3l4 other upstream 1492784 16144160 ~ 16148121 (-)
cc2d1b cc2d1b other upstream 1531278 16182654 ~ 16201698 (-)
mppe1 mppe1,LOC102781954 other upstream 1666042 16317418 ~ 16327426 (-)

Expression


Co-expression Network