prg4a (LOC104954333)


Basic Information

Item Value
gene id prg4a
gene name LOC104954333
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8989441 ~ 8996156 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816141.1
atgatgatgatgatgatgaaaatgtCACCGTGGCTTCTGTTGCTTGGCCTTGCTGTGACCTACACTGCAGCTGCTGGACCAGgcagctgtgTGGGTCGCTGTGGCGAGGTTTTCACCAGAGGCCAGCAGTGTACCTGTGACTTCGGCTGCCAGCAACATAATGAGTGCTGCCCAGACTTTCATGCTGCGTGCATCGCTGCTCAGTCCTGTCAGGGGCGTTGTGGTGAGACCTTCAGGCGTGGTCGGACGTGCGAGTGTGATCCACAGTGCATCCAGTACAACACCTGTTGTCAAGACTACCAGCTACAATGCGATGCCAGAGGGTCAGGTTCAAACACCAGAACTGTCCAGCCTCTGAGGGCTGCCGCTTCAGGAAAACAGAAATCAGAGAGGAGCTGGAGAAAGTCGAACAGTGAAAGCGAGGAATGGTACACAGGTGTGAGTGACATCCCTGCCGGTCTGCAGCCATTGTCCATCCCTTCCTCTAATAGTGGAGTTCCAGACTTGCCAGCTGGCTACTCTCTGCCCAGATATAGTGCTCCGTCTCTGGGCAGCAGTGCTCCTGTCAGACCCTCTGGTCCTGGAGCTGTCGATGGTAACGTGAATGTCCACCTGGTGCTGTCCCCTGGGGGAGGCACTCCATCTGCGCCAAGTCAAGGTCTCAGTGGCCCAGCAGGCTCCAGACCCAGCACCCTGCAGGACGTAGCCCAGGCTTTGGGTCTCTCTGTGGTGGAAGGAGGCTCTGAGGTACCAGGGACAGgactcCTTGCTGATGTCAACCTATGCAGTGATTCTCCCATTAATGGACTGACAGCTCTCAGCAATGGGACCATACTGATATTTAAAGgtgatCTGCTCTGGTCAGTGGACCCTGTCAGTCGCTCAGTTGGTCATCCGCAGAGTATCACAGACACTCTGGGTGTCTCCTCTCCCATCGATACTGTCTTCACACGCTGCAACTGCCTCGGAAACACCTACATCATCAAGGGAGACCAGTACTGGCGTCTAGATAGTAACATGGTGATGGAGCCGGGCTACCCCAAACCTCTGGCCTCTGAGTTTCCTGGTCTGACAGGAAGCATTAGTGCTGCACTGGCAGTACCAGCCACCAGGAACAGACCGGAGACTGTCTACTTCTTTAAGAATGGAGACATCATGCAGAGGTACACCTTCCCACCAGGCAGCACTCCGTCCTGCAGCAAGAAACCAAAACGTTTCGCTCACCAGGCCGTTCTTCTAAGTGGAGAGATCAACATCAAAGTGTCTCTGAAGGGATTCCCCACCCCAGTCACCTCTGCTCTGTCCATGCCCAGCCCTCAGAGGAGTGACTCATACGAGCACTACGTCTTCGCTGGACCGCTCTTCTTCAGGGTCCAGATTTCACGTGACCTGCCAGTGCTGGCCAAACCTGACCCATCTGCAGCCTTTGCACCCCTCCCCATCCTTAGCCCTGCTGCTGTGGCAACCACCTCTGCCAACACGGCCGCTCAAAATGCTAACCCTCCCCTCCCAGCCAACTCCATCAGAGTTTGGCTGCGCTGTCCCTAGGAACATCCTGACAAGCAGA

Function

NR:

description
PREDICTED: proteoglycan 4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816141.1 True 1567 mRNA 0.55 13 8989441 8996156

Neighbor

gene id symbol gene type direction distance location
LOC120567618 olfml2b,LOC100693986 coding upstream 33729 8945102 ~ 8955712 (+)
LOC120568389 kifap3,LOC103479309,LOC103146974,LOC104933922,LOC102235632,LOC100693718,LOC102779720,LOC101476805 coding upstream 68976 8870741 ~ 8920465 (+)
trnan-guu_7 NA coding upstream 95385 8893982 ~ 8894056 (+)
trnan-guu_5 NA coding upstream 99082 8890286 ~ 8890359 (+)
trnan-guu_4 NA coding upstream 106654 8882714 ~ 8882787 (+)
odr4 LOC103370130,LOC102290351,LOC102783281 coding downstream 32401 9028557 ~ 9036694 (+)
dpydb dpyd coding downstream 52010 9048166 ~ 9064521 (+)
LOC120568868 NA coding downstream 69429 9065585 ~ 9070253 (+)
LOC120568720 ptbp2,LOC103370128,LOC106917804,LOC102234855,LOC102779238,LOC105008310,LOC107570490,LOC105910816 coding downstream 75480 9071636 ~ 9093276 (+)
ca8 ca8 coding downstream 239129 9235285 ~ 9256693 (+)
LOC120568741 NA non-coding upstream 19593 8967289 ~ 8969848 (+)
G113131 NA non-coding upstream 32169 8955878 ~ 8957272 (+)
G113092 NA non-coding upstream 161992 8826367 ~ 8827449 (+)
G113050 mrpl37 non-coding upstream 217397 8771147 ~ 8772044 (+)
G113042 NA non-coding upstream 223908 8756881 ~ 8765533 (+)
G113148 NA non-coding downstream 12875 9009031 ~ 9009798 (+)
LOC120569003 NA non-coding downstream 41737 9037893 ~ 9046432 (+)
G113240 NA non-coding downstream 156845 9153001 ~ 9162545 (+)
G113273 NA non-coding downstream 261167 9257323 ~ 9257583 (+)
G113274 NA non-coding downstream 273191 9269347 ~ 9269547 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other upstream 86594 8895927 ~ 8902847 (+)
LOC120568881 mfsd12,LOC104931866 other upstream 163630 8812897 ~ 8825811 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other upstream 179982 8789209 ~ 8809459 (+)
atg10 atg10 other upstream 274170 8708661 ~ 8715271 (+)
LOC120568257 LOC102194642,LOC101465810,LOC102289180,LOC103366014,LOC103129983,LOC107384349,LOC103396642,LOC108246689 other upstream 479033 8406929 ~ 8510408 (+)
LOC120568835 NA other downstream 1889439 10885595 ~ 10886478 (+)
pkia pkia,LOC102780447,LOC102205080 other downstream 2336412 11332568 ~ 11346225 (+)
abhd4 abhd4 other downstream 3126513 12122669 ~ 12128022 (+)
LOC120568189 nop9 other downstream 3161293 12157449 ~ 12166277 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other downstream 3586486 12582642 ~ 12599840 (+)

Expression


Co-expression Network