LOC120568561


Basic Information

Item Value
gene id LOC120568561
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32347289 ~ 32355822 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816144.1
TTCTCTGCTTTGccaatgctgctgctgccccgCACCTGTATCGCTGCCTGCTTTCAGCCCCCACCACAAGTGTTTCAGAGCAAACCCAACCCCCACACTGTTCGCATCGTGCAGTCAGGCAGAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGAAGAAGGGAGAGGATGTGCTTCTGAATGTCACCACAGCTGATGTTTCTACAGATGATTCTGTTTTCTGGAGATTCAATAAAACAGTTAATTTAGTACGAtttctacctggtagaggaccAAAAGTCTCTGATGATTACTCTGAAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAATTGAAGAATCTACAAGAGGCAGACAGTGGAGTTTATACTTTAATAGTGTCTGGGGATAAAGATAAACAAATAACTGGATACAAGATCACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGCTCAGACTGGTGTAACCTGGCAGTGAGCTGCAGAGCAAAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCAACACCTGCAgtcaggagggaggagagagacaacTGGTCCCACCATCTGGTGCTGCTCTCCATGTCTACCTGTCCAATTTTTCCATCATCTGTAACCATAGCAACCAGGTCAGCTGGACAAAGGACATGAAACCAATTAAAAACGTCTGCCCTCGACATACTGGTCCAGAGAGTGTCTCTgctggtgtctctgtgtgcctgcTGAAGACAGCCGTGTTGTCTGTCGGTCTGATCATCACATGGGTGCAAACAATGTAAGatttaaaaagtatttgtaTAAAATCTGgggaaaatgtatttcaacTCGTTTGTAAATcttaaattatactttaaatgCAATTTTGCAGGTATAACTTCATATAAATATTGTTTCTTtccaagaaaactccacagggcaccttttaCACAAATGCTGATGATTCTAAATTATCCATTGATTATACCCAATAACCACTGTGCTCAGTTTGTAAATCAAATTATTTTACAGAGATGTTCCAAAATACTTTACAAGCATGTAATCTCCTTTACAAAAAactatatttatatgtatatgatAAAGAGCAAAGACACAATAACTAGCCTTGATGTAATCCTGAATGTTATTAACAATGTTCTAaccatatatatgtgtatgtttatgtgtacaGGATGTTATTATATTTGTTCATCTTTGGGTAAATGCAGTATCTGAGATTCATTAAAACTATACTCATCTTAta
>XM_039816145.1
TTGTTGCACGCGGTGAGAAAATGTCCAAAGGAGTTGACATGCTACATTCCTCTCAGACCCCTTATGTCTTGGGAAggtttgacatgctataatcTGAAATCCCGTTTTGTGTCTGTTAGAGCAAACCCAACCCCCACACTGTTCGCATCGTGCAGTCAGGCAGAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGAAGAAGGGAGAGGATGTGCTTCTGAATGTCACCACAGCTGATGTTTCTACAGATGATTCTGTTTTCTGGAGATTCAATAAAACAGTTAATTTAGTACGAtttctacctggtagaggaccAAAAGTCTCTGATGATTACTCTGAAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAATTGAAGAATCTACAAGAGGCAGACAGTGGAGTTTATACTTTAATAGTGTCTGGGGATAAAGATAAACAAATAACTGGATACAAGATCACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGCTCAGACTGGTGTAACCTGGCAGTGAGCTGCAGAGCAAAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCAACACCTGCAgtcaggagggaggagagagacaacTGGTCCCACCATCTGGTGCTGCTCTCCATGTCTACCTGTCCAATTTTTCCATCATCTGTAACCATAGCAACCAGGTCAGCTGGACAAAGGACATGAAACCAATTAAAAACGTCTGCCCTCGACATACTGGTCCAGAGAGTGTCTCTgctggtgtctctgtgtgcctgcTGAAGACAGCCGTGTTGTCTGTCGGTCTGATCATCACATGGGTGCAAACAATGTAAGatttaaaaagtatttgtaTAAAATCTGgggaaaatgtatttcaacTCGTTTGTAAATcttaaattatactttaaatgCAATTTTGCAGGTATAACTTCATATAAATATTGTTTCTTtccaagaaaactccacagggcaccttttaCACAAATGCTGATGATTCTAAATTATCCATTGATTATACCCAATAACCACTGTGCTCAGTTTGTAAATCAAATTATTTTACAGAGATGTTCCAAAATACTTTACAAGCATGTAATCTCCTTTACAAAAAactatatttatatgtatatgatAAAGAGCAAAGACACAATAACTAGCCTTGATGTAATCCTGAATGTTATTAACAATGTTCTAaccatatatatgtgtatgtttatgtgtacaGGATGTTATTATATTTGTTCATCTTTGGGTAAATGCAGTATCTGAGATTCATTAAAACTATACTCATCTTAta
>XM_039816146.1
AAATGTCCAAAGGAGTTGACATGCTACATTCCTCTCAGACCCCTTATGTCTTGGGAAggtttgacatgctataatcTCCCCCACCACAAGTGTTTCAGAGCAAACCCAACCCCCACACTGTTCGCATCGTGCAGTCAGGCAGAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGAAGAAGGGAGAGGATGTGCTTCTGAATGTCACCACAGCTGATGTTTCTACAGATGATTCTGTTTTCTGGAGATTCAATAAAACAGTTAATTTAGTACGAtttctacctggtagaggaccAAAAGTCTCTGATGATTACTCTGAAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAATTGAAGAATCTACAAGAGGCAGACAGTGGAGTTTATACTTTAATAGTGTCTGGGGATAAAGATAAACAAATAACTGGATACAAGATCACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGCTCAGACTGGTGTAACCTGGCAGTGAGCTGCAGAGCAAAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCAACACCTGCAgtcaggagggaggagagagacaacTGGTCCCACCATCTGGTGCTGCTCTCCATGTCTACCTGTCCAATTTTTCCATCATCTGTAACCATAGCAACCAGGTCAGCTGGACAAAGGACATGAAACCAATTAAAAACGTCTGCCCTCGACATACTGGTCCAGAGAGTGTCTCTgctggtgtctctgtgtgcctgcTGAAGACAGCCGTGTTGTCTGTCGGTCTGATCATCACATGGGTGCAAACAATGTAAGatttaaaaagtatttgtaTAAAATCTGgggaaaatgtatttcaacTCGTTTGTAAATcttaaattatactttaaatgCAATTTTGCAGGTATAACTTCATATAAATATTGTTTCTTtccaagaaaactccacagggcaccttttaCACAAATGCTGATGATTCTAAATTATCCATTGATTATACCCAATAACCACTGTGCTCAGTTTGTAAATCAAATTATTTTACAGAGATGTTCCAAAATACTTTACAAGCATGTAATCTCCTTTACAAAAAactatatttatatgtatatgatAAAGAGCAAAGACACAATAACTAGCCTTGATGTAATCCTGAATGTTATTAACAATGTTCTAaccatatatatgtgtatgtttatgtgtacaGGATGTTATTATATTTGTTCATCTTTGGGTAAATGCAGTATCTGAGATTCATTAAAACTATACTCATCTTAta
>XM_039816147.1
AGAAAATGTCCAAAGGAGTTGACATGCTACATTCCTCTCAGACCCCTTATGTCTTGGGAAggtttgacatgctataatcTAGCAAACCCAACCCCCACACTGTTCGCATCGTGCAGTCAGGCAGAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGAAGAAGGGAGAGGATGTGCTTCTGAATGTCACCACAGCTGATGTTTCTACAGATGATTCTGTTTTCTGGAGATTCAATAAAACAGTTAATTTAGTACGAtttctacctggtagaggaccAAAAGTCTCTGATGATTACTCTGAAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAATTGAAGAATCTACAAGAGGCAGACAGTGGAGTTTATACTTTAATAGTGTCTGGGGATAAAGATAAACAAATAACTGGATACAAGATCACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGCTCAGACTGGTGTAACCTGGCAGTGAGCTGCAGAGCAAAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCAACACCTGCAgtcaggagggaggagagagacaacTGGTCCCACCATCTGGTGCTGCTCTCCATGTCTACCTGTCCAATTTTTCCATCATCTGTAACCATAGCAACCAGGTCAGCTGGACAAAGGACATGAAACCAATTAAAAACGTCTGCCCTCGACATACTGGTCCAGAGAGTGTCTCTgctggtgtctctgtgtgcctgcTGAAGACAGCCGTGTTGTCTGTCGGTCTGATCATCACATGGGTGCAAACAATGTAAGatttaaaaagtatttgtaTAAAATCTGgggaaaatgtatttcaacTCGTTTGTAAATcttaaattatactttaaatgCAATTTTGCAGGTATAACTTCATATAAATATTGTTTCTTtccaagaaaactccacagggcaccttttaCACAAATGCTGATGATTCTAAATTATCCATTGATTATACCCAATAACCACTGTGCTCAGTTTGTAAATCAAATTATTTTACAGAGATGTTCCAAAATACTTTACAAGCATGTAATCTCCTTTACAAAAAactatatttatatgtatatgatAAAGAGCAAAGACACAATAACTAGCCTTGATGTAATCCTGAATGTTATTAACAATGTTCTAaccatatatatgtgtatgtttatgtgtacaGGATGTTATTATATTTGTTCATCTTTGGGTAAATGCAGTATCTGAGATTCATTAAAACTATACTCATCTTAta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816144.1 False 1340 mRNA 0.40 5 32351928 32355822
XM_039816145.1 True 1381 mRNA 0.40 5 32347289 32355822
XM_039816146.1 False 1360 mRNA 0.40 6 32347307 32355822
XM_039816147.1 False 1342 mRNA 0.39 5 32347304 32355822

Neighbor

gene id symbol gene type direction distance location
kirrel1b LOC101488125,LOC102302400,LOC100705859 coding upstream 21642 32232208 ~ 32325647 (+)
trnar-ucu_14 NA coding upstream 220859 32126357 ~ 32126430 (+)
sdhc sdhc,LOC103479501 coding upstream 222791 32118953 ~ 32124498 (+)
LOC120568430 LOC103373937,LOC105937883,LOC100694151 coding upstream 231342 32075076 ~ 32115947 (+)
mpz mpz,LOC102776110 coding upstream 295854 32031652 ~ 32051435 (+)
LOC120568571 NA coding downstream 81636 32437458 ~ 32441095 (+)
LOC120568570 NA coding downstream 116798 32472620 ~ 32486408 (+)
LOC120568820 LOC101162955,LOC103374738 coding downstream 219491 32575313 ~ 32586349 (+)
si:ch211-155e24.3 si:ch211-155e24.3,LOC108427093,LOC107549816,LOC107750208,LOC107671805 coding downstream 295482 32651304 ~ 32656857 (+)
LOC120568452 LOC103367094 coding downstream 360931 32716753 ~ 32721611 (+)
G119409 NA non-coding upstream 5926 32341125 ~ 32341363 (+)
G119398 NA non-coding upstream 222374 32124564 ~ 32124915 (+)
LOC120567918 NA non-coding upstream 287916 32056055 ~ 32059373 (+)
G119332 NA non-coding upstream 431688 31849440 ~ 31915601 (+)
G119328 NA non-coding upstream 504318 31838382 ~ 31842971 (+)
G119416 NA non-coding downstream 8744 32364566 ~ 32364768 (+)
G119417 NA non-coding downstream 16741 32372563 ~ 32403711 (+)
LOC120568573 NA non-coding downstream 148390 32504212 ~ 32505293 (+)
G119453 kcnj10 non-coding downstream 193322 32549144 ~ 32555738 (+)
G119519 NA non-coding downstream 208019 32563841 ~ 32564486 (+)
cadm3 cadm3 other upstream 120806 32128458 ~ 32226483 (+)
LOC120567694 LOC103373937,LOC106569580,LOC100136182,LOC107383461,LOC106960171 other upstream 275977 32067563 ~ 32071312 (+)
pip4p1a tmem55b,LOC101161334 other upstream 432585 31888908 ~ 31914704 (+)
dnaaf6 pih1d3,LOC106903480,LOC103138000,LOC103138005,LOC103137996,LOC106960166 other upstream 477794 31865755 ~ 31869495 (+)
G119257 NA other upstream 886381 31459864 ~ 31460908 (+)
LOC120568569 NA other downstream 96883 32452705 ~ 32471570 (+)
G119582 vangl2,LOC103137974 other downstream 412885 32768707 ~ 32769852 (+)
G119584 vangl2,LOC102795188 other downstream 419252 32775074 ~ 32775682 (+)
G119585 NA other downstream 425166 32780988 ~ 32781471 (+)
tep1 LOC104950563,LOC104941471 other downstream 632995 32988817 ~ 33049081 (+)

Expression


Co-expression Network