LOC120568569


Basic Information

Item Value
gene id LOC120568569
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32452705 ~ 32471570 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816161.1
CACCGTTGTGTCGTGCAGTCAGGCAGGACAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGCAGAAGAGAGAGGATGTGCTTCTGAATGTCACAATAGCTGATGATCCTAAAGAAGATATTGTTACCTGGAGATTCAATAAAACAGTTAATTTAGTACGATTTCTACCTGGGAACCTCGGAGCAAAAGTCTCTGATGATTACTCTGGAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAACTGAAGAATCTAACAGAGGCAGACAGTGGAGTTTATACTGCAGTAGTGTCTGGGGATACAGATAAACAAATAACTGGATACAAGATTACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGACCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCACAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCTGCAgtcaggagggaggagagagaccaCAGGTCACACCCTCTGCTGCTGATCTCCATGTCTACCTGTCCAATGGCTCCATCATCTGTAACCATAGCAACCAGGTCAGCTGGACCAAGGACATGAAAATAATTAAACATTTCTGCCCCCGACATGCTGAGAGTGACCCTGCtggtctctctgtgtgcctgctGAAGACAGCCGTGTTGTCCGTCGGTCTGATCATCATGGTGGCTGCTGTCATCACTGTTCACCTCATGGAGAAGCTCAAGAAGCGCAAATAAAAACTTGAAGGTACAGTGTGCAGCTTTTGGACCACTAATAGCACCAGCGATCAGTTTTTATGCTTGAGTCAATGTTTTCTTTGTATTGTGCATGCACGAGCCCTGCTACACATTCCTCCCACTGATGTCATGCTGTTCCACTGATTGACAGCAGGTGGCAGTCACACACCAGGAAATGAACCAACAAAGGAGAGGAGGTAGAAGTCTGCAAGCCAGAAAACATAGATTTTAATATGTGTACAAAATCTGGGAAAATATGAATCCTAACACATTTGTAAAGCTTCAACGGTTTTAACAATGCAATTTGGAGAATATAACATCATGTAAATATTGTTTCTTTCCAAGAAAACTTCTCACCTTTAATAAAAATGCTGATTATT
>XM_039816162.1
CACCGTTGTGTCGTGCAGTCAGGCAGGACAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGCAGAAGAGAGAGGATGTGCTTCTGAATGTCACAATAGCTGATGATCCTAAAGAAGATATTGTTACCTGGAGATTCAATAAAACAGTTAATTTAGTACGATTTCTACCTGGGAACCTCGGAGCAAAAGTCTCTGATGATTACTCTGGAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAACTGAAGAATCTAACAGAGGCAGACAGTGGAGTTTATACTGCAGTAGTGTCTGGGGATACAGATAAACAAATAACTGGATACAAGATTACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGACCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCACAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCTGCAgtcaggagggaggagagagaccaCAGGTCACACCCTCTGCTGCTGATCTCCATGTCTACCTGTCCAATGGCTCCATCATCTGTAACCATAGCAACCAGGTCAGCTGGACCAAGGACATGAAAATAATTAAACATTTCTGCCCCCGACATGCTGAGAGTGACCCTGCtggtctctctgtgtgcctgctGAAGACAGCCGTGTTGTCCGTCGGTCTGATCATCATGGTGGCTGCTGTCATCACTGTTCACCTCATGGAGAAGCTCAAGAAGCGCAAATAAAAACTTGAAGGTGGCAGTCACACACCAGGAAATGAACCAACAAAGGAGAGGAGGTAGAAGTCTGCAAGCCAGAAAACATAGATTTTAATATGTGTACAAAATCTGGGAAAATATGAATCCTAACACATTTGTAAAGCTTCAACGGTTTTAACAATGCAATTTGGAGAATATAACATCATGTAAATATTGTTTCTTTCCAAGAAAACTTCTCACCTTTAATAAAAATGCTGATTATT
>XM_039816164.1
CACCGTTGTGTCGTGCAGTCAGGCAGGACAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGCAGAAGAGAGAGGATGTGCTTCTGAATGTCACAATAGCTGATGATCCTAAAGAAGATATTGTTACCTGGAGATTCAATAAAACAGTTAATTTAGTACGATTTCTACCTGGGAACCTCGGAGCAAAAGTCTCTGATGATTACTCTGGAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAACTGAAGAATCTAACAGAGGCAGACAGTGGAGTTTATACTGCAGTAGTGTCTGGGGATACAGATAAACAAATAACTGGATACAAGATTACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGACCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCACAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCTGCAgtcaggagggaggagagagaccaCAGGTCACACCCTCTGCTGCTGATCTCCATGTCTACCTGTCCAATGGCTCCATCATCTGTAACCATAGCAACCAGGTCAGCTGGACCAAGGACATGAAAATAATTAAACATTTCTGCCCCCGACATGCTGAGAGTGACCCTGCtggtctctctgtgtgcctgctGAAGACAGCCGTGTTGTCCGTCGGTCTGATCATCATGGTGGCTGCTGTCATCACTGTTCACCTCATGGAGAAGCTCAAGAAGCGCAAATAAAAACTTGAAGCAGGTGGCAGTCACACACCAGGAAATGAACCAACAAAGGAGAGGAGGTAGAAGTCTGCAAGCCAGAAAACATAGATTTTAATATGTGTACAAAATCTGGGAAAATATGAATCCTAACACATTTGTAAAGCTTCAACGGTTTTAACAATGCAATTTGGAGAATATAACATCATGTAAATATTGTTTCTTTCCAAGAAAACTTCTCACCTTTAATAAAAATGCTGATTATT
>XM_039816165.1
CACCGTTGTGTCGTGCAGTCAGGCAGGACAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGCAGAAGAGAGAGGATGTGCTTCTGAATGTCACAATAGCTGATGATCCTAAAGAAGATATTGTTACCTGGAGATTCAATAAAACAGTTAATTTAGTACGATTTCTACCTGGGAACCTCGGAGCAAAAGTCTCTGATGATTACTCTGGAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAACTGAAGAATCTAACAGAGGCAGACAGTGGAGTTTATACTGCAGTAGTGTCTGGGGATACAGATAAACAAATAACTGGATACAAGATTACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGACCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCACAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCTGCAgtcaggagggaggagagagaccaCAGGTCACACCCTCTGCTGCTGATCTCCATGTCTACCTGTCCAATGGCTCCATCATCTGTAACCATAGCAACCAGGTCCAGAGAGTGTCTCTgctggtgtctctgtgtgcctgcTGAAGACAGCCGTGTTGTCCATCGGTCTGAT
>XM_039816166.1
CACCGTTGTGTCGTGCAGTCAGGCAGGACAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGCAGAAGAGAGAGGATGTGCTTCTGAATGTCACAATAGCTGATGATCCTAAAGAAGATATTGTTACCTGGAGATTCAATAAAACAGTTAATTTAGTACGATTTCTACCTGGGAACCTCGGAGCAAAAGTCTCTGATGATTACTCTGGAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAACTGAAGAATCTAACAGAGGCAGACAGTGGAGTTTATACTGCAGTAGTGTCTGGGGATACAGATAAACAAATAACTGGATACAAGATTACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGACCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCACAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCTGCAgtcaggagggaggagagagaccaCAGGTCACACCCTCTGCTGCTGATCTCCATGTCTACCTGTCCAATGGCTCCATCATCTGTAACCATAGCAACCAGAGAGTGACCCTGCtggtctctctgtgtgcctgctGAAGACAGCCGTGTTGTCCGTCGGTCTGATCATCATGGTGGCTGCTGTCATCACTGTTCACCTCATGGAGAAGCTCAAGAAGCGCAAATAAAAACTTGAAGGTACAGTGTGCAGCTTTTGGACCACTAATAGCACCAGCGATCAGTTTTTATGCTTGAGTCAATGTTTTCTTTGTATTGTGCATGCACGAGCCCTGCTACACATTCCTCCCACTGATGTCATGCTGTTCCACTGATTGACAGCAGGTGGCAGTCACACACCAGGAAATGAACCAACAAAGGAGAGGAGGTAGAAGTCTGCAAGCCAGAAAACATAGATTTTAATATGTGTACAAAATCTGGGAAAATATGAATCCTAACACATTTGTAAAGCTTCAACGGTTTTAACAATGCAATTTGGAGAATATAACATCATGTAAATATTGTTTCTTTCCAAGAAAACTTCTCACCTTTAATAAAAATGCTGATTATT
>XR_005640734.1
CACCGTTGTGTCGTGCAGTCAGGCAGGACAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGCAGAAGAGAGAGGATGTGCTTCTGAATGTCACAATAGCTGATGATCCTAAAGAAGATATTGTTACCTGGAGATTCAATAAAACAGTTAATTTAGTACGATTTCTACCTGGGAACCTCGGAGCAAAAGTCTCTGATGATTACTCTGGAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAACTGAAGAATCTAACAGAGGCAGACAGTGGAGTTTATACTGCAGTAGTGTCTGGGGATACAGATAAACAAATAACTGGATACAAGATTACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGACCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCACAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCTGCAgtcaggagggaggagagagaccaCAGGTCACACCCTCTGCTGCTGATCTCCATGTCTACCTGTCCAATGGCTCCATCATCTGTAACCATAGCAACCAGAGAGTGACCCTGCtggtctctctgtgtgcctgctGAAGACAGCCGTGTTGTCCGTCGGTCTGATCATCATGGTGGCTGCTGTCATCACTGTTCACCTCATGGAGAAGCTCAAGAAGCGCAAATAAAAACTTGAAGGTGGCAGTCACACACCAGGAAATGAACCAACAAAGGAGAGGAGGTAGAAGTCTGCAAGCCAGAAAACATAGATTTTAATATGTGTACAAAATCTGGGAAAATATGAATCCTAACACATTTGTAAAGCTTCAACGGTTTTAACAATGCAATTTGGAGAATATAACATCATGTAAATATTGTTTCTTTCCAAGAAAACTTCTCACCTTTAATAAAAATGCTGATTATT
>XR_005640735.1
CACCGTTGTGTCGTGCAGTCAGGCAGGACAACTGGACTGGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTGCAGAAGAGAGAGGATGTGCTTCTGAATGTCACAATAGCTGATGATCCTAAAGAAGATATTGTTACCTGGAGATTCAATAAAACAGTTAATTTAGTACGATTTCTACCTGGGAACCTCGGAGCAAAAGTCTCTGATGATTACTCTGGAAGGATTGAGTTGCTTGAGAACTACTCTGTGAAACTGAAGAATCTAACAGAGGCAGACAGTGGAGTTTATACTGCAGTAGTGTCTGGGGATACAGATAAACAAATAACTGGATACAAGATTACAGTTCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGACCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCACAGGACTCTCACATTAACAGCACCTTTAGATGTGACACCCACACCTGCAgtcaggagggaggagagagaccaCAGGTCACACCCTCTGCTGCTGATCTCCATGTCTACCTGTCCAATGGCTCCATCATCTGTAACCATAGCAACCAGAGAGTGACCCTGCtggtctctctgtgtgcctgctGAAGACAGCCGTGTTGTCCGTCGGTCTGATCATCATGGTGGCTGCTGTCATCACTGTTCACCTCATGGAGAAGCTCAAGAAGCGCAAATAAAAACTTGAAGCAGGTGGCAGTCACACACCAGGAAATGAACCAACAAAGGAGAGGAGGTAGAAGTCTGCAAGCCAGAAAACATAGATTTTAATATGTGTACAAAATCTGGGAAAATATGAATCCTAACACATTTGTAAAGCTTCAACGGTTTTAACAATGCAATTTGGAGAATATAACATCATGTAAATATTGTTTCTTTCCAAGAAAACTTCTCACCTTTAATAAAAATGCTGATTATT

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04660 T cell receptor signaling pathway
ko04062 Chemokine signaling pathway
ko05340 Primary immunodeficiency

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816161.1 True 1193 mRNA 0.44 4 32452705 32455106
XM_039816162.1 False 1049 mRNA 0.44 5 32452705 32455106
XM_039816164.1 False 1052 mRNA 0.44 5 32452705 32455106
XM_039816165.1 False 703 mRNA 0.47 4 32452705 32471570
XM_039816166.1 False 1138 mRNA 0.44 4 32452705 32455106
XR_005640734.1 False 994 transcript 0.44 5 32452705 32455106
XR_005640735.1 False 997 transcript 0.44 5 32452705 32455106

Neighbor

gene id symbol gene type direction distance location
LOC120568571 NA coding upstream 11610 32437458 ~ 32441095 (+)
LOC120568561 NA coding upstream 96883 32347289 ~ 32355822 (+)
kirrel1b LOC101488125,LOC102302400,LOC100705859 coding upstream 127058 32232208 ~ 32325647 (+)
trnar-ucu_14 NA coding upstream 326275 32126357 ~ 32126430 (+)
sdhc sdhc,LOC103479501 coding upstream 328207 32118953 ~ 32124498 (+)
LOC120568570 NA coding downstream 1050 32472620 ~ 32486408 (+)
LOC120568820 LOC101162955,LOC103374738 coding downstream 103743 32575313 ~ 32586349 (+)
si:ch211-155e24.3 si:ch211-155e24.3,LOC108427093,LOC107549816,LOC107750208,LOC107671805 coding downstream 179734 32651304 ~ 32656857 (+)
LOC120568452 LOC103367094 coding downstream 245183 32716753 ~ 32721611 (+)
myadmb LOC104961532,LOC101466547 coding downstream 371529 32843099 ~ 32852397 (+)
G119417 NA non-coding upstream 48994 32372563 ~ 32403711 (+)
G119416 NA non-coding upstream 87937 32364566 ~ 32364768 (+)
G119415 NA non-coding upstream 102992 32348121 ~ 32349713 (+)
G119409 NA non-coding upstream 111342 32341125 ~ 32341363 (+)
G119398 NA non-coding upstream 327790 32124564 ~ 32124915 (+)
LOC120568573 NA non-coding downstream 32642 32504212 ~ 32505293 (+)
G119453 kcnj10 non-coding downstream 77574 32549144 ~ 32555738 (+)
G119519 NA non-coding downstream 92271 32563841 ~ 32564486 (+)
G119541 NA non-coding downstream 162058 32633628 ~ 32634719 (+)
G119556 NA non-coding downstream 237725 32709295 ~ 32710372 (+)
cadm3 cadm3 other upstream 226222 32128458 ~ 32226483 (+)
LOC120567694 LOC103373937,LOC106569580,LOC100136182,LOC107383461,LOC106960171 other upstream 381393 32067563 ~ 32071312 (+)
pip4p1a tmem55b,LOC101161334 other upstream 538001 31888908 ~ 31914704 (+)
dnaaf6 pih1d3,LOC106903480,LOC103138000,LOC103138005,LOC103137996,LOC106960166 other upstream 583210 31865755 ~ 31869495 (+)
G119257 NA other upstream 991797 31459864 ~ 31460908 (+)
G119582 vangl2,LOC103137974 other downstream 297137 32768707 ~ 32769852 (+)
G119584 vangl2,LOC102795188 other downstream 303504 32775074 ~ 32775682 (+)
G119585 NA other downstream 309418 32780988 ~ 32781471 (+)
tep1 LOC104950563,LOC104941471 other downstream 517247 32988817 ~ 33049081 (+)
LOC120568463 NA other downstream 692346 33163916 ~ 33166100 (+)

Expression


Co-expression Network