LOC120568570


Basic Information

Item Value
gene id LOC120568570
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 32472620 ~ 32486408 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816167.1
AGTGTGTCTGTTAGAACAAAACACAACCCCCACACCGTTGCATCGTGCTGTCAGGCAGGACAACTGGACTCGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTCCAGAAGGGAGAGGATGTGCTTCTAAATGTCACCACAGCTGATGTTTCTACAGAAGATATGGTTTTCTGGAGATTCAATAAAACAGTTAATATAGTACGATTTTTAGCTGGTACAGAAACAATCTTTGATGACTACTCTGGAAGGATTGAGGTGCTTGAGAACTATTCTGTGAAATTGAAGAATCTACAAGAGGCAGACAGTGGAGTTTATACTGCAGTAGTGTCTGGGggtaaagaaaaaacaataacTGGATACAAGGTCACAGTCCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGCTCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCAAAGGACTCTCACATTAGCAGCACCTTTAGATGTGACACCCACACCTGCAGtcaggaaggaggagagagactaCAGGTCCCACCCTCTGATGCTGATCTCCATGTCTACCTGTCCAATGGCTCCATCATCTGTAACCATAGCAACCAGGTCAGCTGGAAAAAGGACATGAAACCAATTAAAAATGTCTGCCCCCGACTTGCTGGTCCAGAGAGTGTCTCTGCTGGTTTCTCTGTGTGCCTGCTGAAGACAGCCGTGTTGTCCGTCGGTCTGATCATCATGGTGGCTGCTGTCATCACTGTTCACCTCATGGAGAAGCTCAAGAAGcacaaataaaaacttaaagttaAAGGTACGCTGTGCAGCTTTTGACCACTAATAGCACCAtggagaagtttttttttttttttaataagagtccctgttttgtttgttttgttaatgcACGAGCCATCAGAGGGACGTTGTACATTCCAGCCACTGATGTCATGCTGTTCCACTGATTGACAGTAGGTGGCAGTAACACACCAATAAATTAACCAACAAAGGAGAGGCGGTAGAACGCTGCAAGCCAGACAACATGGATGCAAAcaatgtaaaattaaaaaaatatttgtacaaAATATGgggaaaatgtatttcaacTCATTTGTAAAGCGTAAATGATACTTTAAATGCAATTTTAGTTTTAGCAAAGTATaacaagaaaactccacatgGCACATTTTATGCAAATTCTTATGATTCTTAATTATCCATTGATTATACCCAATAATCACTGTGATCACTTTGTAAATACAATTATTGTACAAAATATGTTCCAAAATATTTTAGGAGCATGTAATCTCcttaataaaaaacatttacatttatagatatatttatatacatgtatctttatacatttataaataTAAAGATACAAGAACTAGTCTTGATGTAACCCTGAATGTTATTAACAATGTTCTAacaatatatatgtgtatgtttatatgtacagtatgttattagtttttatttatctttgggTGACTGCAGTTTCTGCTACATGCACCATTATCCGAGATTTATTAAAGCTATACTCATAATATTTTGTGGtgattttgtgaattcatggaAAGATCACGGCCACTGACTGTCACTGTCCCGTTTAAATCTGTGAACAAAATTTGGGAAAATATTAATCCCAACACATTTGTAAAGCTTCAAGGTTTTTTACAATGCAATTTGGCAAGTACATCATCTTGTAAATATTGTCTATTTCtgagaaaactccacagggcacctttaTTACAAATGCTGATAATTCTTGATTATTCATTGATTATACCCAATAATCAATGTCCTCactttgtaaataaaatgattgtttgtttattgtttattattgttcaTTAAAAGGATCCCTATTAGCTTATGCCGTAGCAgtcagctactcttcctggggtccacactaGACACGCAATACAAGATTACATCACATTATA
>XM_039816168.1
GTGTGTCTGTTAGAACAAAACACAACCCCCACACCGTTGCATCGTGCTGTCAGGCAGGACAACTGGACTCGACTCTGTCATGTCTATCTTTGTGATACTGGGACTGCTGGTCTGCATAGAGGCACAAGAGCCCAGTGCTGTGACTCCTGTGTTTGTCCAGAAGGGAGAGGATGTGCTTCTAAATGTCACCACAGCTGATGTTTCTACAGAAGATATGGTTTTCTGGAGATTCAATAAAACAGTTAATATAGTACGATTTTTAGCTGGTACAGAAACAATCTTTGATGACTACTCTGGAAGGATTGAGGTGCTTGAGAACTATTCTGTGAAATTGAAGAATCTACAAGAGGCAGACAGTGGAGTTTATACTGCAGTAGTGTCTGGGggtaaagaaaaaacaataacTGGATACAAGGTCACAGTCCAAGATCCAGTGTCTCCAGTTAAACTGTCAGTGGACTCTGTGTCTAACAGCTCAGACTGGTGTAACCTGACAGTGAGCTGCAGAGCAAAGGACTCTCACATTAGCAGCACCTTTAGATGTGACACCCACACCTGCAGtcaggaaggaggagagagactaCAGGTCCCACCCTCTGATGCTGATCTCCATGTCTACCTGTCCAATGGCTCCATCATCTGTAACCATAGCAACCAGGTCCAGAGAGTGTCTCTGCTGGTTTCTCTGTGTGCCTGCTGAAGACAGCCGTGTTGTCCGTCGGTCTGATCATCATGGTGGCTGCTGTCATCACTGTTCACCTCATGGAGAAGCTCAAGAAGcacaaataaaaacttaaagttaAAGGTACGCTGTGCAGCTTTTGACCACTAATAGCACCAtggagaagtttttttttttttttaataagagtccctgttttgtttgttttgttaatgcACGAGCCATCAGAGGGACGTTGTACATTCCAGCCACTGATGTCATGCTGTTCCACTGATTGACAGTAGGTGGCAGTAACACACCAATAAATTAACCAACAAAGGAGAGGCGGTAGAACGCTGCAAGCCAGACAACATGGATGCAAAcaatgtaaaattaaaaaaatatttgtacaaAATATGgggaaaatgtatttcaacTCATTTGTAAAGCGTAAATGATACTTTAAATGCAATTTTAGTTTTAGCAAAGTATaacaagaaaactccacatgGCACATTTTATGCAAATTCTTATGATTCTTAATTATCCATTGATTATACCCAATAATCACTGTGATCACTTTGTAAATACAATTATTGTACAAAATATGTTCCAAAATATTTTAGGAGCATGTAATCTCcttaataaaaaacatttacatttatagatatatttatatacatgtatctttatacatttataaataTAAAGATACAAGAACTAGTCTTGATGTAACCCTGAATGTTATTAACAATGTTCTAacaatatatatgtgtatgtttatatgtacagtatgttattagtttttatttatctttgggTGACTGCAGTTTCTGCTACATGCACCATTATCCGAGATTTATTAAAGCTATACTCATAATATTTTGTGGtgattttgtgaattcatggaAAGATCACGGCCACTGACTGTCACTGTCCCGTTTAAATCTGTGAACAAAATTTGGGAAAATATTAATCCCAACACATTTGTAAAGCTTCAAGGTTTTTTACAATGCAATTTGGCAAGTACATCATCTTGTAAATATTGTCTATTTCtgagaaaactccacagggcacctttaTTACAAATGCTGATAATTCTTGATTATTCATTGATTATACCCAATAATCAATGTCCTCactttgtaaataaaatgattgtttgtttattgtttattattgttcaTTAAAAGGATCCCTATTAGCTTATGCCGTAGCAgtcagctactcttcctggggtccacactaGACACGCAATACAAGATTACATCACATTATA

Function

GO: NA

KEGG:

id description
ko04666 Fc gamma R-mediated phagocytosis
ko04062 Chemokine signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816167.1 True 1996 mRNA 0.38 4 32472620 32486408
XM_039816168.1 False 1940 mRNA 0.38 4 32472621 32486408

Neighbor

gene id symbol gene type direction distance location
LOC120568571 NA coding upstream 31525 32437458 ~ 32441095 (+)
LOC120568561 NA coding upstream 116798 32347289 ~ 32355822 (+)
kirrel1b LOC101488125,LOC102302400,LOC100705859 coding upstream 146973 32232208 ~ 32325647 (+)
trnar-ucu_14 NA coding upstream 346190 32126357 ~ 32126430 (+)
sdhc sdhc,LOC103479501 coding upstream 348122 32118953 ~ 32124498 (+)
LOC120568820 LOC101162955,LOC103374738 coding downstream 88905 32575313 ~ 32586349 (+)
si:ch211-155e24.3 si:ch211-155e24.3,LOC108427093,LOC107549816,LOC107750208,LOC107671805 coding downstream 164896 32651304 ~ 32656857 (+)
LOC120568452 LOC103367094 coding downstream 230345 32716753 ~ 32721611 (+)
myadmb LOC104961532,LOC101466547 coding downstream 356691 32843099 ~ 32852397 (+)
ltb4r2b NA coding downstream 443043 32929451 ~ 32938337 (+)
G119417 NA non-coding upstream 68909 32372563 ~ 32403711 (+)
G119416 NA non-coding upstream 107852 32364566 ~ 32364768 (+)
G119415 NA non-coding upstream 122907 32348121 ~ 32349713 (+)
G119409 NA non-coding upstream 131257 32341125 ~ 32341363 (+)
G119398 NA non-coding upstream 347705 32124564 ~ 32124915 (+)
LOC120568573 NA non-coding downstream 17804 32504212 ~ 32505293 (+)
G119453 kcnj10 non-coding downstream 62736 32549144 ~ 32555738 (+)
G119519 NA non-coding downstream 77433 32563841 ~ 32564486 (+)
G119541 NA non-coding downstream 147220 32633628 ~ 32634719 (+)
G119556 NA non-coding downstream 222887 32709295 ~ 32710372 (+)
LOC120568569 NA other upstream 1050 32452705 ~ 32471570 (+)
cadm3 cadm3 other upstream 246137 32128458 ~ 32226483 (+)
LOC120567694 LOC103373937,LOC106569580,LOC100136182,LOC107383461,LOC106960171 other upstream 401308 32067563 ~ 32071312 (+)
pip4p1a tmem55b,LOC101161334 other upstream 557916 31888908 ~ 31914704 (+)
dnaaf6 pih1d3,LOC106903480,LOC103138000,LOC103138005,LOC103137996,LOC106960166 other upstream 603125 31865755 ~ 31869495 (+)
G119582 vangl2,LOC103137974 other downstream 282299 32768707 ~ 32769852 (+)
G119584 vangl2,LOC102795188 other downstream 288666 32775074 ~ 32775682 (+)
G119585 NA other downstream 294580 32780988 ~ 32781471 (+)
tep1 LOC104950563,LOC104941471 other downstream 502409 32988817 ~ 33049081 (+)
LOC120568463 NA other downstream 677508 33163916 ~ 33166100 (+)

Expression


Co-expression Network