psmb11a (psmb11,LOC102789740,LOC102210751)


Basic Information

Item Value
gene id psmb11a
gene name psmb11,LOC102789740,LOC102210751
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12553568 ~ 12554626 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816175.1
ATGGCTTTGGAAGAAATTTGTGGCTTCAAAGACACTCCTGTTCATCTCAGCAGGCCTTTCCCTCTGTCTCATGGGACAACAACCTTGGGTTTCATCTTCCAAGGTGGGGTCATTGCAGCGGCAGACTCACGTGCCAGTGCTGGGGGACTTGTTGCCTGTCCAGCTGTTCACAAGATTACCCCTATTCACTCCCATTTAGTGGTCACCTCCTCTGGTAGCGGTGCAGACTGCATGCTGTGGGAGAGAATTCTGGCCAGAGAGATCAGACTCTACCAACTGCGGCACAGACGTTGCCTTTCAATATGTGGCACTGCCAAGCTCCTTTCATTTATGCTGCACCCCTTTAAAGggactgatgtgtgtgtggcccTGACATTGTGTGGCTGGGATAAGGAAACAGGCCCGAAGCTGATATATGTGTGCAGCGATGGTGCCCGACTGAAGGGGGACATCTTTTCTGTGGGCTCAGGCTCTCCTTATGCTTATGGAGTCCTGGATAGAGAGCAGAGGTGGAGCCTGAGTAAAGAAGAGGCCATCTCCTTGGCAAGAGAAGCAGTGTTCAGAGCCACTCACAGGGACGCCTACTCAGGAAACAAAGTGGACATCTTCCACATCACAGCCCAGGGATGGAgccaaagaaagagagaggacctGAAAGAGGAATACTATAGAGACATGGAGAGGAGGGCGAAGATAgtggaggaaagaaaaagagtgaCCAAATTAGATGCTTTGGGATGA

Function

symbol description
psmb11 Enables peptidase activity. Acts upstream of or within proteolysis. Predicted to be located in cytosol. Predicted to be part of proteasome core complex, beta-subunit complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: proteasome subunit beta type-11

GO: NA

KEGG:

id description
K11598 PSMB11; 20S proteasome subunit beta 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816175.1 True 741 mRNA 0.51 3 12553568 12554626

Neighbor

gene id symbol gene type direction distance location
LOC120568866 cdh24,LOC102798176 coding downstream 38938 12360983 ~ 12514630 (-)
carmil3 NA coding downstream 225528 12230121 ~ 12328040 (-)
rem2 rem2 coding downstream 345898 12176857 ~ 12207670 (-)
tgm1l1 LOC103370497 coding downstream 401487 12131437 ~ 12152081 (-)
dad1 dad1,LOC101158164 coding downstream 431490 12116802 ~ 12122078 (-)
homeza homez coding upstream 61994 12616620 ~ 12621709 (-)
dhrs1 dhrs1 coding upstream 68119 12622745 ~ 12627332 (-)
c11h14orf119 LOC104956585 coding upstream 108569 12663195 ~ 12664701 (-)
mmp14b LOC103360306,LOC103396588 coding upstream 137369 12691995 ~ 12704763 (-)
sall2 LOC104956582,LOC103360303 coding upstream 151548 12706174 ~ 12715746 (-)
G113828 NA non-coding downstream 196677 12356334 ~ 12356891 (-)
G113810 NA non-coding downstream 197487 12353843 ~ 12356081 (-)
G113806 NA non-coding downstream 324230 12228979 ~ 12229338 (-)
G113799 NA non-coding downstream 344598 12208532 ~ 12208970 (-)
G113772 NA non-coding downstream 377986 12163161 ~ 12175582 (-)
LOC120568043 NA non-coding upstream 30903 12585529 ~ 12600592 (-)
G113933 NA non-coding upstream 203025 12757651 ~ 12759273 (-)
G113945 NA non-coding upstream 235213 12789839 ~ 12793027 (-)
G114129 col6a1,col6a2 non-coding upstream 398754 12953380 ~ 13167706 (-)
LOC120567923 NA non-coding upstream 468644 13023270 ~ 13039958 (-)
G113805 NA other downstream 335301 12218062 ~ 12218267 (-)
LOC120567758 NA other downstream 1664616 10887007 ~ 10888952 (-)
brinp2 brinp2,LOC103369811 other downstream 2286490 10040686 ~ 10267078 (-)
LOC120568397 NA other downstream 3043071 9400787 ~ 9510497 (-)
chd7 chd7,LOC103370133,LOC102782711 other downstream 3358696 9114384 ~ 9194872 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other upstream 46554 12601180 ~ 12608569 (-)
LOC120568934 LOC104956577 other upstream 206122 12760748 ~ 12768625 (-)
LOC120568578 wdr48 other upstream 411840 12966466 ~ 12975328 (-)
G114152 NA other upstream 529935 13084561 ~ 13088563 (-)
dis3l2 dis3l2 other upstream 914905 13469531 ~ 13482225 (-)

Expression


Co-expression Network