nsun4 (nsun4)


Basic Information

Item Value
gene id nsun4
gene name nsun4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33949596 ~ 33955044 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816184.1
gtttttttgctgtcgGGGAAGACGGAACGAAGAACTGTCGCACTGCATGATGGCGCTGCTCTTAAATTCTAGGCTTCTACTAAGAAAAGTTAAAGATTTAAGGTGTTTAACGCCAAGAAGAAACCGAGTGAAGGAAAAATGGGCTGTCACACGTACCAAGCACCCTCCCACCAGTCTGGCCCTGCAGCACTTTGACGCCACCTACAGCGTCcagctggggcagctgtggccATCAGTCCGCGCTGCCTTGCTGTCCGAGAGGAAATACGGAGCCCTGCTCAATCATTTCTCCCACGATGCTGTTCTGGCAGACCTCGAAGCCCAGGGATGCAGGGACTTCCTCGGTGACACAGCTACAAAAACTCAGCCATGCTTGGAGCAAAAACCTGAGGTTGCAACCGAGGAGGAATCCGTTTCTATGAAGAAATGTGACAGCGATAGTGAGCAGCTACCTCCTCTACAGCTCAGTCCTAACATCAAGTGTCTAGTGTTTCCTAGAGGGGATATCACAAGATTCAAGCCTGCTAGACCAGACATGTGTGGCTTGTTGGGTTACTATCTGATGGACGCAGCGTCTGTGTTGCCGTGTCTAGCCGTCCAAGAAGGACACAATGTGCTCGACCTGTGTGCCGCTCCCGGAGGCAAGACCCTGGCTTTACTTCAGAGCCAGGCTATAGGTTTTTTGTGCGTAAACGACGCCTCGGTGTCTCGGACGCTGCGGCTGAGGAAAGTCCTCCACAGCTACGTCCCTAAGCCGCTTTTGACGGACGAGAAGCTGCGCATCACCTCTTTTGATGGCACCAAGTGGGAAATCGAAAGGAACACATTCGACAGAGTCCTTGTTGACGTCCCCTGcagcacagacagacattcaCTCATGGAGGACGACAACAATGTATTCAGTAAGAGCAGGACCGGTGAGAGACGGAAGCTGCCAGAGCTgcagctggagctgctgctGGCGGGAATCGAAGCAGCTTGTCCAGGTGGGGAGATCCTTTACTCCACCTGCACACTCTCTCAAATCCAGAACCTGGGTGTGGTGGAACAGGCCGTCTACTTGGCTCGAGAGAACCGCGGCATCCAGCTTCAAGTTGTCGATCTGCGACCCCTCACACACATGTTTAGGAAAACCTTTCACTTTGCGCCCGACCTCCCCCTGGGTGAGATGGTCATCCCCCACTTAGCCGCTAACTTTGGCCCCATCTACATGTGCAAGCTGCGGCGGCTCACATAGACGGTGGACCGGTGCTGAAGCTTGTGGACATTTGAACGACCGCGTTGCAGCTTTCATGGACTAACGAGATGACCCTCTCTCAACCGTAGCTGTTGGAGCACAGCTGAAGGAGAACTTTTAATCGCCGTGGTGGAGTGCCGAATCACTggacagaaaacacaaagaatCCAGTTCAAGGACCTGGACCGTGATGTTATTGGAGACGTATCACCATGGTATTTTGTGGAGGCCAACCCACCTCCGCAAAAAATATCAAACTCCAACTGTTTCCTTAATGctttttctttaaaggtcccatggcatgaaaatttcacttttatgagttttttttaacattaatatgcattccctgagcctgcctatggtcccccagtggctagaaatggcgataggtgt

Function

symbol description
nsun4 Predicted to enable methyltransferase activity. Predicted to be involved in rRNA methylation. Predicted to act upstream of or within methylation. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human NSUN4 (NOP2/Sun RNA methyltransferase 4).

NR:

description
5-methylcytosine rRNA methyltransferase NSUN4

GO: NA

KEGG:

id description
K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816184.1 True 1633 mRNA 0.52 10 33949596 33955044

Neighbor

gene id symbol gene type direction distance location
gadd45aa gadd45a,LOC105919244 coding downstream 88308 33858570 ~ 33861288 (-)
dipk1aa LOC104920940,LOC103355123,LOC100700149 coding downstream 269809 33664713 ~ 33679787 (-)
glmna glmn,LOC102782615 coding downstream 327174 33611613 ~ 33622422 (-)
znf644a znf644,LOC103355709 coding downstream 371754 33561200 ~ 33577842 (-)
gtf2b gtf2b coding downstream 416884 33520706 ~ 33532712 (-)
pif1 pif1 coding upstream 2975 33958019 ~ 33976815 (-)
LOC120567625 LOC104964778,LOC107104388,LOC103353835,LOC102303690,LOC102777524 coding upstream 53847 34008891 ~ 34034308 (-)
st3gal3b st3gal3,LOC106568968,LOC104920950 coding upstream 90954 34045998 ~ 34100666 (-)
kdm4ab LOC103353045 coding upstream 165539 34120583 ~ 34152780 (-)
abhd8a LOC104920953,LOC104954835,LOC103352801 coding upstream 198873 34153917 ~ 34161671 (-)
G120052 NA non-coding downstream 402 33948520 ~ 33949194 (-)
G120039 NA non-coding downstream 95922 33830803 ~ 33853674 (-)
G120034 NA non-coding downstream 126013 33808520 ~ 33823583 (-)
G120016 LOC105920460,LOC103479125,LOC106958286,LOC103149535,LOC106904251,LOC108244512,LOC106529836 non-coding downstream 181817 33737498 ~ 33767779 (-)
LOC120568796 NA non-coding downstream 231345 33715393 ~ 33718251 (-)
G120096 NA non-coding upstream 82866 34037910 ~ 34038115 (-)
G120150 NA non-coding upstream 252472 34207516 ~ 34207796 (-)
G120166 NA non-coding upstream 270974 34226018 ~ 34227413 (-)
G120173 NA non-coding upstream 279462 34234506 ~ 34234711 (-)
LOC120569054 LOC104920957 non-coding upstream 281372 34236416 ~ 34244121 (-)
G119989 NA other downstream 290320 33654302 ~ 33659276 (-)
gfi1aa gfi1,LOC100698183,LOC101467858,LOC102203194,LOC102781835,LOC106958274 other downstream 300079 33645095 ~ 33649517 (-)
selenof selenof other downstream 515671 33421389 ~ 33433925 (-)
LOC120568437 NA other downstream 692659 33217190 ~ 33256937 (-)
zgc:66427 LOC103370245 other downstream 961037 32979206 ~ 32988559 (-)
G120168 LOC105912833 other upstream 273582 34228626 ~ 34229050 (-)
G120230 NA other upstream 445779 34400823 ~ 34404013 (-)
LOC120568808 LOC103366832,LOC103395886,LOC104944844 other upstream 832124 34787168 ~ 34792767 (-)
G120390 NA other upstream 940535 34895579 ~ 34895913 (-)
LOC120567704 NA other upstream 1056064 35011108 ~ 35014245 (-)

Expression


Co-expression Network