pif1 (pif1)


Basic Information

Item Value
gene id pif1
gene name pif1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 33958019 ~ 33976815 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816187.1
CGTCGCTCGGCTATTGGCTGAATTCACGCAGCGACAATTTGAAAATCGGTGCTCGCGTTCCCGGAGTGGGGCAGCAGCTGCACGGAAAACGGAACAGAGACAAAGATTCTAACCTGTTCTAAAAACAAAGAAGTCGCTGCGATGTTATCCGGGGAGGACGGCGGCCAGCTGCAGTGCTGTGTGACGGTGGAGCAGCTTAACGCCTCCGGCCAGGCCACCCGGAGGCAGGTCATCCGTAAAGCCTCGGTCGTCCTGGGCCGGAATGAGTTCCACGAGATTATCCTCCGCGTCCACGACGGGAAAGTGCCGCAAAATTACCATTTGAAAGAATTCAAACTTTTCACCAAGTTCGCCAGAGAAGGGAAGTGCACCGTCAAACTGCTGCCCGAAAACACCCAGGTGCTCATCTCCAACTGCCCCCCTGACCGGCTCAACCTCTTCCTCAAAACCCTGAGCGTCAAACACCAGGCCCGGCAGAGCAGCAAGCCTCTGAGCGGCCGAGAGAAGCTCAAAGCCGGTCTGCCCCGCAGCTTCGAGGCCATCAGCCCCCTGCAGCAAAAGGACATCCAGAAGGTGAATGAGCTGAGGGGTAAAGTGGCCCCCACAGGGCTGGCGGAGCGCACCAATAAGATGACCCGAGCAGGAACAGGACAACAGGTCAAAAGGTCCAGGAGTGACACGAACTTCAGCCCAGTAAAGGCCAACCCGAGCAAGAAGCCCATCCTGTCTCTACCAACACGTAAGCTGAATAAAGAACAGGCGGCTGTCCTCGGTGCAGTGCTGAGTGGCAAGAACATCTTCTTCACTGgaagtgcaggtACAGGAAAGTCCTTCCTCCTGAAGAGAATCATGGGATCTCTTCCTCCAAAGAGCACATTTGCCACAGCCAGCACAGGAGTGGCTGCCTGCCACATTGGAGGAACAACATTACACAACTTTGCTGGCATTGGCTCCGGCTCGGCCCCGCTGGAGCAGTGCATCGAGCTGGCTCAGAGGCCCGGCGTGCTGCAGCACTGGACCAGCTGTCGACACCTCATCATCGACGAGATCTCCATGGTGGAGGCCCAGTTCTTTGACAAGCTCGAGGCGGTGGCAAGGTCGGTTCGGAGGTCTACGGCGCCATTTGGAGGCATCCAGCTGATCGTGTGTGGCGACTTCCTCCAGCTGCCTCCTGTTTCCAAGGGAAAGGAAAGAGCCAGCTTCTGCTTCCAGGCCAGGAGTTGGCGCAAGGTCATCCAGGTGAACATGGAGCTAATGGAGGTGCGGAGGCAAACGGACCAGTCCTTCATCTCCCTCCTGCAGTCTGTGCGGGTGGGCAGGGTGACGGAGGAAGTCACGGCGACGCTGTTGGGAAGCGCCTACCACCACATCGAGAGGGATGGCATCCTAGCGACCAGGCTGTGCACACATAAGGACGACGTGGAGCTCACCAACGAGATGAAACTCCAGCAGCTGCCTGGGTCAGTGCGTGTGTTCGAGGCTCTGGACAGTGACCCAGCCCTGGTGAAGGCCATCGACGCTCACAGCCCCGTCAGCAAAGTGATCCACCTCAAAGTGGGGGCTCAGGTCATGCTGACGAAGAACCAGGATGTCTCTCGAGGTCTGGTGAACGGAGCGCGGGGGGTCGTGGCCTTTGAGTCTGGAAAAAACGGACTCCCACATGTGCGTTTCCTGTGTGGCGTCACAGAGGTGCTGAAGCCGGAGCGCTGGGTGTTTAAGTCCGGCGGGGGGGTCCACCTGAGTCGACAGCAGCTGCCCCTCAAACTGGCCTGGGCCATCTCCATCCACAAGAGTCAGggAATGACCCTTGACTGTGTGGAGATCTCTCTGGCGCGCGTGTTTGAGAGCGGCCAGGCCTACGTGGCGTTGTCTCGGGCTCGGAGCCTGCAGGGTCTGAGGGTCATGGACTTTGACCCCCGTGTGGTCAGGGCAGATCCAGACGTTCTTGTCTTCTACAAGAAACTGAGGAAAGAGAGGCTGCTCATGCAGGCCTCCATGGATGACTTTTTCGGCAACAGCAACAAAGAAAACTCTTGAAGGTGAATTAATCTTCATCCTCTGTGACATTATGCACCGTGTGCATGAGTTAGCATCTGGTTTTATTTCTCTTGGGACAATTTGCTTTTCTTAAACGACTGCAACCAGACAACTTCACGGTTTCTCTTTTAACCGGCAGCACTTACTGCCACCTTCtggtcatgtgttttttttaagagctTATTTTtatgctttatttttaatttattatcatGATTGTTGGTATGTTTTCCAATAAAGTTCTAGTCAACCTCTA
>XM_039816188.1
TCGGCTATTGGCTGAATTCACGCAGCGACAATTTGAAAATCGGTGCTCGCGTTCCCGGAGTGGGGCAGCAGCTGCACGGAAAACGGAACAGAGACAAAGATTCTAACCTGTTCTAAAAACAAAGTCGCTGCGATGTTATCCGGGGAGGACGGCGGCCAGCTGCAGTGCTGTGTGACGGTGGAGCAGCTTAACGCCTCCGGCCAGGCCACCCGGAGGCAGGTCATCCGTAAAGCCTCGGTCGTCCTGGGCCGGAATGAGTTCCACGAGATTATCCTCCGCGTCCACGACGGGAAAGTGCCGCAAAATTACCATTTGAAAGAATTCAAACTTTTCACCAAGTTCGCCAGAGAAGGGAAGTGCACCGTCAAACTGCTGCCCGAAAACACCCAGGTGCTCATCTCCAACTGCCCCCCTGACCGGCTCAACCTCTTCCTCAAAACCCTGAGCGTCAAACACCAGGCCCGGCAGAGCAGCAAGCCTCTGAGCGGCCGAGAGAAGCTCAAAGCCGGTCTGCCCCGCAGCTTCGAGGCCATCAGCCCCCTGCAGCAAAAGGACATCCAGAAGGTGAATGAGCTGAGGGGTAAAGTGGCCCCCACAGGGCTGGCGGAGCGCACCAATAAGATGACCCGAGCAGGAACAGGACAACAGGTCAAAAGGTCCAGGAGTGACACGAACTTCAGCCCAGTAAAGGCCAACCCGAGCAAGAAGCCCATCCTGTCTCTACCAACACGTAAGCTGAATAAAGAACAGGCGGCTGTCCTCGGTGCAGTGCTGAGTGGCAAGAACATCTTCTTCACTGgaagtgcaggtACAGGAAAGTCCTTCCTCCTGAAGAGAATCATGGGATCTCTTCCTCCAAAGAGCACATTTGCCACAGCCAGCACAGGAGTGGCTGCCTGCCACATTGGAGGAACAACATTACACAACTTTGCTGGCATTGGCTCCGGCTCGGCCCCGCTGGAGCAGTGCATCGAGCTGGCTCAGAGGCCCGGCGTGCTGCAGCACTGGACCAGCTGTCGACACCTCATCATCGACGAGATCTCCATGGTGGAGGCCCAGTTCTTTGACAAGCTCGAGGCGGTGGCAAGGTCGGTTCGGAGGTCTACGGCGCCATTTGGAGGCATCCAGCTGATCGTGTGTGGCGACTTCCTCCAGCTGCCTCCTGTTTCCAAGGGAAAGGAAAGAGCCAGCTTCTGCTTCCAGGCCAGGAGTTGGCGCAAGGTCATCCAGGTGAACATGGAGCTAATGGAGGTGCGGAGGCAAACGGACCAGTCCTTCATCTCCCTCCTGCAGTCTGTGCGGGTGGGCAGGGTGACGGAGGAAGTCACGGCGACGCTGTTGGGAAGCGCCTACCACCACATCGAGAGGGATGGCATCCTAGCGACCAGGCTGTGCACACATAAGGACGACGTGGAGCTCACCAACGAGATGAAACTCCAGCAGCTGCCTGGGTCAGTGCGTGTGTTCGAGGCTCTGGACAGTGACCCAGCCCTGGTGAAGGCCATCGACGCTCACAGCCCCGTCAGCAAAGTGATCCACCTCAAAGTGGGGGCTCAGGTCATGCTGACGAAGAACCAGGATGTCTCTCGAGGTCTGGTGAACGGAGCGCGGGGGGTCGTGGCCTTTGAGTCTGGAAAAAACGGACTCCCACATGTGCGTTTCCTGTGTGGCGTCACAGAGGTGCTGAAGCCGGAGCGCTGGGTGTTTAAGTCCGGCGGGGGGGTCCACCTGAGTCGACAGCAGCTGCCCCTCAAACTGGCCTGGGCCATCTCCATCCACAAGAGTCAGggAATGACCCTTGACTGTGTGGAGATCTCTCTGGCGCGCGTGTTTGAGAGCGGCCAGGCCTACGTGGCGTTGTCTCGGGCTCGGAGCCTGCAGGGTCTGAGGGTCATGGACTTTGACCCCCGTGTGGTCAGGGCAGATCCAGACGTTCTTGTCTTCTACAAGAAACTGAGGAAAGAGAGGCTGCTCATGCAGGCCTCCATGGATGACTTTTTCGGCAACAGCAACAAAGAAAACTCTTGAAGGTGAATTAATCTTCATCCTCTGTGACATTATGCACCGTGTGCATGAGTTAGCATCTGGTTTTATTTCTCTTGGGACAATTTGCTTTTCTTAAACGACTGCAACCAGACAACTTCACGGTTTCTCTTTTAACCGGCAGCACTTACTGCCACCTTCtggtcatgtgttttttttaagagctTATTTTtatgctttatttttaatttattatcatGATTGTTGGTATGTTTTCCAATAAAGTTCTAGTCAACCTCTA

Function

symbol description
pif1 Predicted to enable several functions, including 5'-3' DNA helicase activity; ATP binding activity; and DNA binding activity. Predicted to be involved in DNA duplex unwinding and DNA replication. Predicted to act upstream of or within DNA recombination; DNA repair; and telomere maintenance. Predicted to be located in mitochondrion and nucleus. Predicted to be active in replication fork. Is expressed in ectoderm; head; optic tectum; pectoral fin musculature; and proliferative region. Orthologous to human PIF1 (PIF1 5'-to-3' DNA helicase).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0000002 mitochondrial genome maintenance biological_process
GO:0006310 DNA recombination biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K15255 PIF1; ATP-dependent DNA helicase PIF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816187.1 True 2293 mRNA 0.55 13 33958019 33976815
XM_039816188.1 False 2284 mRNA 0.55 13 33958019 33976809

Neighbor

gene id symbol gene type direction distance location
nsun4 nsun4 coding downstream 2975 33949596 ~ 33955044 (-)
gadd45aa gadd45a,LOC105919244 coding downstream 96731 33858570 ~ 33861288 (-)
dipk1aa LOC104920940,LOC103355123,LOC100700149 coding downstream 278232 33664713 ~ 33679787 (-)
glmna glmn,LOC102782615 coding downstream 335597 33611613 ~ 33622422 (-)
znf644a znf644,LOC103355709 coding downstream 380177 33561200 ~ 33577842 (-)
LOC120567625 LOC104964778,LOC107104388,LOC103353835,LOC102303690,LOC102777524 coding upstream 32076 34008891 ~ 34034308 (-)
st3gal3b st3gal3,LOC106568968,LOC104920950 coding upstream 69183 34045998 ~ 34100666 (-)
kdm4ab LOC103353045 coding upstream 143768 34120583 ~ 34152780 (-)
abhd8a LOC104920953,LOC104954835,LOC103352801 coding upstream 177102 34153917 ~ 34161671 (-)
ano8a LOC103395863,LOC103153027,LOC103479148,LOC106907894 coding upstream 196858 34173673 ~ 34202298 (-)
G120052 NA non-coding downstream 8825 33948520 ~ 33949194 (-)
G120039 NA non-coding downstream 104345 33830803 ~ 33853674 (-)
G120034 NA non-coding downstream 134436 33808520 ~ 33823583 (-)
G120016 LOC105920460,LOC103479125,LOC106958286,LOC103149535,LOC106904251,LOC108244512,LOC106529836 non-coding downstream 190240 33737498 ~ 33767779 (-)
LOC120568796 NA non-coding downstream 239768 33715393 ~ 33718251 (-)
G120096 NA non-coding upstream 61095 34037910 ~ 34038115 (-)
G120150 NA non-coding upstream 230701 34207516 ~ 34207796 (-)
G120166 NA non-coding upstream 249203 34226018 ~ 34227413 (-)
G120173 NA non-coding upstream 257691 34234506 ~ 34234711 (-)
LOC120569054 LOC104920957 non-coding upstream 259601 34236416 ~ 34244121 (-)
G119989 NA other downstream 298743 33654302 ~ 33659276 (-)
gfi1aa gfi1,LOC100698183,LOC101467858,LOC102203194,LOC102781835,LOC106958274 other downstream 308502 33645095 ~ 33649517 (-)
selenof selenof other downstream 524094 33421389 ~ 33433925 (-)
LOC120568437 NA other downstream 701082 33217190 ~ 33256937 (-)
zgc:66427 LOC103370245 other downstream 969460 32979206 ~ 32988559 (-)
G120168 LOC105912833 other upstream 251811 34228626 ~ 34229050 (-)
G120230 NA other upstream 424008 34400823 ~ 34404013 (-)
LOC120568808 LOC103366832,LOC103395886,LOC104944844 other upstream 810353 34787168 ~ 34792767 (-)
G120390 NA other upstream 918764 34895579 ~ 34895913 (-)
LOC120567704 NA other upstream 1034293 35011108 ~ 35014245 (-)

Expression


Co-expression Network