LOC120568588 (c8b,LOC102794687,LOC102209383)


Basic Information

Item Value
gene id LOC120568588
gene name c8b,LOC102794687,LOC102209383
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 14056500 ~ 14112121 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816192.1
CAGGCAACTTCAGAGctggagagaagggagagagagaaaagaacatAGAGCTTTACGGGATCTTAGAATTGTGGAAGaattttgaacatgtaaaaaaGCGAGGCAATGTGATTTCACCTTGTGTGTCCGGGAAATGGAATTAACAAATGGATTTTCTTAAAcacgctctctccctctctttctctctctctctctctctctctctctctctcattggggGGAAAAATAGAGCGCTCAAATGAAGGGGACACAGATCTGGATTAAAACGCATAAATGGGACACTCCAGAGAAGCATCCGCTAGGAAAAGTGCTCGGAACAAGTGACTGTGATGGGCTGTCGGGCTGCATCTGAAGTACTCTACCAAAGAATAATATCCACTCCTGACCTACTCTGAAGAACAATATTTGATTCGATCAATGTTACAGTCTCCCCCGGAGGGAATTACTCCTGAGTAATAGGTGGACCCTCAGAAAAGAGCAACAGTAGACCATGTGATACTTGACCTTCAAAGAGAGAACTCGGGTACACTCCAGGAGATGTCAAATCTGAGTTGAGGCTGCTCTCGAGAGGAACACCCAGCTCATAATTCAATCATCTTTTCATGTGTTGCTCAGCAATACTCAAACATCATGGGCCATCAGTGACGGAGCGTAGTTATCAATGCTGGATCTTCATTTATTGAGGAGTACCGGACATCTCATCATGGATTTGAATGAGATTTTCTTCACCAAAGTGCAACTGTAAGAAAGACTGGAGTGTGGGGGAACCGGACACTGGGGGTTGGGAGGATTAGCTAGTGGGCTGCTAACCCATGGTGGATCTGCTGTGAGCAGGATAAGGGACTCAGCAGTGGAGGATGTCAGCGGAGGCCGAGCTCCAGCCGGGTGTCAAAACCAGCCAGCGAAGGGAGTCCAGGAGGATCAAAGGTCAGGACCGCAGTGAGGCGGGGCTTATTAAGCGTTTCCGTGGAGATGGCGTGCGCTACAAGGCCAAGCTGATCGGGATTGATGAGGTGACAGCAGCGCGTGGGGACAAGCTGTGCCAGGACTCCATGATGAagctgaagGGAATGGCTTCCTCAGCACGTTCCAAAGGGGAGCACAAGCAGAGAGTGTTCTTGACGGTCTCTTTCGGCGGGATCAAGATTTACTGTGAGAGATCAGGGGTGCTCATGCATCACCACTCAGTCCATGAGATCAGCTACATCGCAAAGGACACCAGGGACCACCGGGCCTTTGGCTACGTCTGTGGGAAGGAGGGCCACCACAAGTTTGTGGCCGTCAAGACCGCGCAGTCGGCGGAGCCTCTCATCATTGACCTGCGTGACCTCTTTACGCTCATCTATGACATTAAACAGCGGGAGGAGATGGAGAAGAAGGCCCAGAAGGACAAACAGTGTGAGCAGGCAGTCTACCAGACCATCCTGGAGGACGAAGTGGACGATCCCGTTTACCAGTACATAGTGTTTGAGGCTGGACACGAACCCCTCCGTGGCCCCCAGTCAGAGGAGAGCGTTTATCAGGTCCCAACCAGTCAGCAGAAGGAAGGGATCTATGATGTCCCAAAACGCCATTTCATGACTAACATCAACCACTTTGATCTTTTCGGTGACATGTCCACTCCTCCCTCGATGCCCCCATCACCTGCCAACACACTGGACCCAAGCAGGAGCAGCCGCCAGCAGCAACACACTCCTGCTGAGTTGTACGCCCCCTTCAGCCCCACCTCTGTGCCGTCAGGTTATATGACCATGGGTCCGGTGCAGGCGGCCCAATGGGCGCAGCAGCCATTTCCTGCCCAGGCCCAGACTTTGGCCTTCCCTGTGCAGGGGCCCCTCCAGGTGGCTCAGGTCCTCCCTGGTGGTCAGCCAGTCATCTGGAGCCAGGCCAATATTTTCCCGGccacccagcagcagtgggcgGCCATGGCAGCCTACATGCCGGCCCAGACCGTGGGCGTGGGAGGGCACGCCATACCAGCTGCCATGCTCCAAGGCCTGGTACCCATTACCACCATGTGCCCCCAAGCCTGCGACATATCAGCCCCCTCCTCTGCCATCACCAGCCCCCAGCACACGGCCGACCCCGGCCTGCTGCAGAGGCAGCTGAGCCTGGGGAGGGAAGGCCTCGGCGTGGACTCAGATGCAGGCGAGGGCCCCTCTACATCAGGAGCCGGAGCAGCAGGTGTGGGACCTGGCGTGGCGTCCGCAGCGGTGAGCAGGTGTGGGACCCCAGGCCTCATGGGTGTACCGGACACACTGGCCTGCAGTCAGCTGCTGCTGCCTCCGTCAGCTGCTGTGAACCAGGAAGAGGAAGGGAGCTGTAGTGACCTTGATCTCTCTAGGATGACCTTGAGCCCCGGTACATCCACATCACCGTCTACTGAATCTCCATCCACTCCAGCCCCTCAGCAGAGCTCGTCTTCAGACTGCCCTCCTTCCCAGGCCAGTGACCCCCCAACAGATCACTCCCCTGTAGACCCAGTGGGCAACTGCAGCAACGTTAAGGAGGAACAGTCGACAACCATGCTTCCTGTGGTGATACGAGTGATGAGTGCCCTCAGTTTGCAGTGCTGTCTACTTTATGGTACTTTGTGCTTGGTGCTGCTAAGTAAAGTTGCCATGACAACAGCGAGCGATGAAGAGCCTAGTGTTCGTGATGCTCGGTCAGTGGGCGATCAGGTGCTAGTTCATCCAGTGGACTGTGCTTTATCAGAGTGGAGCTCGTGGTCACGCTGTGACACctgtcagaaaaaaagaTATCGCTACGCTAAACTGGTCCAGCCGTCTCAGTTTGGGGGGCAGCCGTGCAATTTTCAtggcagggaggaggaggcctGTAACGTTCCATCCCGTTACACCTGTAACAATGTTCCTTTGTGTGAGGGATTCCTCTGTGCCCAAACAGGTCGTTGTGTTCACAGAACTCTGCAGTGTAATGGGGAGGATGACTGTGGGGACATGTCAGATGAAGTCGGCTGTAAAAAGGTTCCAAAGCCCTGCAGGCAGGAGGCTGAAGAGTATTGGGGAATCGAAAATCTTGCCAAAGGAATCAACGTTTTGAACAGTGACCTGGAAGGTGTGGTGCTTGATAACAGATACTACGCTGGCAGCTGCTTGCCTCACTTCATCCAGGATGTCAGATTCAGGAAGCCTTACAACTTGCAACAGTACACTCTGCAGACAAAAGGCTCATATGATTTCACCTTGGAGGCTTTCGACTCATACTCTGAGTACATGGACCACACCATAAAGGAGCACACGACCCAAACCTCTTTTGCCATCGGTTTTGGCATTGCAGGAGTAGCTGAATTTGGCTTCAGTTTCAAAGATGAAAAATATACCAAGGCAGAACGGAAGATTCGCAGTGCTTCTGGCAAGACTAACAGCTTTGTGAGAGCCAAAGCAGAACTGGAGCTGGCCCAGTATATGTTGAAATCAGATGGTTTGATGCTTCACCCTGAGTTCCTGCAGCGCCTGCGCTCCTTGCCACAGTCCTATGTTTATGGGGAATACAGACAGATCTACAGGGACTACGGCACCCACTACGTCACAGAGGCAGCCCTCGGAGGAGACTATGAGCACACCACTATCCTGAACAAGGAGAAGCTTGAGAAGACACATTATACTTTGGACGACTACAAACGCTGTACGGAGGCAGGCGTTAAGGCCGGGGCCAACATTAAAGGTGTTTATGTGTCTTTGGGTGTTACGGGTGGATCTTGTAGTGGCCTGATGACTGAGATTGGAGaGGACACAGTACATGGCAGCATGGTGGAGGACTTTGTTGCTGTTGTAAGGGGTGGAAGTAGTGAATCCATCGCTGCTTTGGTGTCTAAAGAGCTTCCCACCCCGCAGCTGATGGGGCTCTGGGGCGAAGGCGTGCGCTTTAACCCCGACTTCATTCGCAAAACAACAAAACCGCTGTATGAGCTGGTGACCTCCAGAGACTTTTCACAGGATGGCACTCTGAAAAGAAACCTGAAGAAAGCGCTGTCAGAGTACCTGACAGAGGCTAGTCCGTGTCGATGTGCTCCCTGCCATAACAACGGAGTGGCCTTTTTGAAAGGCACcaggtgtgactgtgtgtgcccTGTTGGCTACTCTGGACGGGGCTGTGAAATCACTACTAGGCAAAAAGATATAGCCATTGATGGCAGCTGGAGCTGCTGGGGCGCATGGTCATCCTGCAGTGGAAGAACAATGACAAGGAGTCGACAGTGTAACAACCCAGCACCCGGCAATGGAGGCCTGGCGTGCAGAGGACTGCAGCAAGAGTCTACTGAATGCATTTAAAATCTGCACAACAGCCCTGACTAATAAAAAACGAACTTTggta

Function

symbol description
c8b Predicted to act upstream of or within complement activation, classical pathway; cytolysis; and innate immune response. Predicted to be located in extracellular region. Predicted to be part of membrane attack complex. Is expressed in liver. Human ortholog(s) of this gene implicated in type II complement component 8 deficiency. Orthologous to human C8B (complement C8 beta chain).

NR:

description
PREDICTED: complement component C8 beta chain

GO:

id name namespace
GO:0006957 complement activation, alternative pathway biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0019835 cytolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005579 membrane attack complex cellular_component

KEGG:

id description
K03998 C8B; complement component 8 subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816192.1 True 4338 mRNA 0.53 25 14056500 14112121

Neighbor

gene id symbol gene type direction distance location
si:ch211-188c16.1 NA coding downstream 7360 14038702 ~ 14049140 (-)
LOC120568033 LOC103366454,LOC104932767,LOC101066162,LOC108238297 coding downstream 18199 14023028 ~ 14038301 (-)
LOC120568034 NA coding downstream 45258 14007742 ~ 14011242 (-)
pgap6 tmem8a coding downstream 50292 13996391 ~ 14006208 (-)
c11h7orf26 LOC103366860,LOC102212268,LOC102304778,LOC102798014,LOC100695326 coding downstream 71911 13978250 ~ 13984589 (-)
LOC120567994 NA coding upstream 60025 14172146 ~ 14190109 (-)
dnm3b LOC104927414,LOC102288810,LOC102208633,LOC103366040,LOC101463593 coding upstream 79842 14191963 ~ 14215454 (-)
LOC120567997 LOC104927432,LOC101487132,LOC102794113,LOC102204900,LOC100692642,LOC102311096,LOC103365877 coding upstream 118315 14230436 ~ 14233700 (-)
fggy fggy coding upstream 126595 14238716 ~ 14254537 (-)
tada1 tada1 coding upstream 147665 14259786 ~ 14266899 (-)
G114456 c8a non-coding downstream 977 14049494 ~ 14055523 (-)
LOC120567953 NA non-coding downstream 108385 13942055 ~ 13948115 (-)
G114257 NA non-coding downstream 427833 13625776 ~ 13628667 (-)
G114256 LOC102077222,LOC102776852 non-coding downstream 431021 13622903 ~ 13625479 (-)
G114247 anxa13,LOC105930306,LOC100703370 non-coding downstream 491697 13556604 ~ 13564803 (-)
LOC120568036 NA non-coding upstream 12582 14124703 ~ 14171474 (-)
G114518 NA non-coding upstream 207222 14319343 ~ 14320763 (-)
G114530 NA non-coding upstream 306730 14418851 ~ 14466248 (-)
G114538 LOC104949927,LOC103364340 non-coding upstream 328760 14440881 ~ 14447933 (-)
G114544 NA non-coding upstream 405355 14517476 ~ 14517893 (-)
tfr1a NA other downstream 87689 13949871 ~ 13968811 (-)
dis3l2 dis3l2 other downstream 574275 13469531 ~ 13482225 (-)
G114152 NA other downstream 967937 13084561 ~ 13088563 (-)
LOC120568578 wdr48 other downstream 1081172 12966466 ~ 12975328 (-)
LOC120568934 LOC104956577 other downstream 1287875 12760748 ~ 12768625 (-)
LOC120568687 NA other upstream 501492 14613613 ~ 14618224 (-)
G114680 NA other upstream 683797 14795918 ~ 14797044 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other upstream 1177961 15290082 ~ 15304610 (-)
G115164 btf3l4 other upstream 2032039 16144160 ~ 16148121 (-)
cc2d1b cc2d1b other upstream 2070533 16182654 ~ 16201698 (-)

Expression


Co-expression Network