ccdc39 (LOC104962657)


Basic Information

Item Value
gene id ccdc39
gene name LOC104962657
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15421740 ~ 15431774 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816196.1
GTGACAACATTGTAAGACACGTGCGGTTGCTAGGGGCGACTGACAACAGACAGCGGTTGCAACAGTTAGCGACAGCAAACTGGAGAAAGAAACAACTGATAGCAGCGGTTAATTATAGCTAATCCAGCGGAaacaattagctagctagctattacTTTGAATTCTTTTGTTGGTTGTAGAGGCTTAGTCAAACTGCAGGAAAATGCCGAGCATTATTAATACAGTTTTATCCGAGATGGGCTGGGATGAGCGCTTTGCTATCCCCGAACCTAACGCTGAAAACAAGGCTTTGATAGAAGAGATTcgtaaaaaagagacagagtcGGTGCATCTGGAAAACAAACTTGAGAGAAACAAGGATCAAAAGCAGTTAATGACCGAATTCCTCAAAAACGCTAAACAAGAGCTGGAAAATACTGAGGCCCTGTGCAAGGCAAAGGAAAGAGATGAAGAGTTGGAGAAACACCTCACCTCCCttgcagaaagagagacaggtcgCCTGGCACAAGAGATTGCTAAGATGGAGAATGACCATAGATCTTTAGCAGAGAGGAGGAACATGCTCGAGAACCATATCTTCAAGGCCAAACAGAAGCTAGAGGAGTTTAGGAACCAAATGAACTGGGACCAGCAGACCATGGATGGCTTTTTAGAGGAGTCAGCATGCAAAGATGAGGACACAATGGCCATCATGAAGTACGCCCAGCAAGATGAGCAGAGGATCAAGTCACTCACTCTGGCTATAGAGAAGAAGACACTGGAGGCCAATGAAAAGCGCAAAGCACTTGACAAAGAATTGACTGAGACTATATCTGCACAGATTGCTTTGGATAAAACTACAGAAAATTTGCAGCAGGCCCACCTGGAGACACAGCAGCTCATCCACCAGTGGGAAAACACCATCAAGCAGATGAAGCAACGAGACGCTGAGATGCAGCAGTGTGCTCTGCAACTTGCCCAAGCCAACCAGAACATCAGGGAGAGAAATTGCACCATTACAGAGAAGAAGCACTTGCTGGACACTCAGAGGAACAACAACAAGGAAACGGAGAGGAAGATAACAATGGCCAACCGACAGGCTGTAAAACTGCGGGAGGATTTGAAGGAGCAGGAGAATAACTGCAGCAGGCTGAAGGACGAGCTGGATAGTTGCAAAGGCACACTGGACAGAGCAACCTCCGATGTGGAGTCGGTGACGTCCCACATAGCCAGAATGAAAAAAGACATCCAGGATAACAATGACAAactCAAGCAGGCCAGGGCCTACAATGTTGCGCTGGAAGAGAAGCTGAAAGTTGTGACTCAGACCGCCCTtagtgaggaggagagagctGCACAGATGGATCACCTCCTCAATGATGAGGAACACGCAATCAAGGAATTGGATGTCCAGCTGCGTGACTGCAGGGAGGAGCTTTGTCGTAAAGAGCGTTTGCAGGCCCTCAAGACCAACGAGAAGAATTCTATCTCTCAGGTTTCGAGGAGTAAATCCACCATCACCAGCCTGGACAGCCAGCTTAGAAAACTGGAGAAGGAATTAGTAAAACAGCAGATGATCACGAGTCAACAGGATTCCCAGATCGTCAGCCTGGGTAGAAAACTGGCACGGCTGCAAGGTGAAGCTCACTCGGATGATAAACAAATGCTAGACACAAAGATCGCTGAGCTGACCAAAGCCctagaggagaagaaggagacgGCCAAGATGCTTACCAACACACTCAAGGAGTCTGAGAATGATATTCGCTATTTGAGGAAAGAGATGGAGAAGTCAGAAGCTCAAAGGAGAGATCTGACTAACAAGGTGGAGGAGCTCTTGCTACTCCGTAACACCAATGAAAAGGAGCTGAAGAGACTCAGGCTCAGGAAACAGGACAACATGGTGGAGCACAACGTCATGAAGATAGAGGTCAAGCGTATGAGGGATCTGCTGTATAACAAGGCGGGCAGCGTGCTGTCCCTGGAGAAGAGGAAGCTGGAGCTGCAGAAAGCCATAAaggacagggaggaagaggtcAAGGTCTACAGAGAAATGCTCAGCCAGCAGCTCAAGATCAGTGagcaggagagacagagactcaGGTTGATAGAGGAGAAATCACAGGCTTACTACATCACAAAGGCTGCACAAGAGAAAGAGGAGCTCAAGCGGAAGGGAGACGGTCTGGATGCTAACATCCGCAAGATGGAGCTGGAAAATAGAGCTCTGGAGAACACCATTCAGTTGTTCAACAACAGTAACTCAGCATTTCGCAAATccctcaacaaagtaaatgaaTCCAgtCCAGAGCACCAGGAAAAACTGAAGCTGGAAGAGCAGTTGAGGGCGGCTGAAGAGATGCTGAAGTATAGGAAAAGACAACTCCAAGAGCTCCAACAGGACTTACAGgacatgaacaatACATTGGAGAGTCTGCTGCAAGAAGAGCAGATGGAGAAAGATAACATAGAGCACAAACAGTCACTCATCAGTAAACTGAACAAAGAAATCGCTTCCCAGCAGGAGAAGGTTGTCAGAGCCACAAAGCAGtgCTCTAAGCTTACCAAAGAGATCCGCttggcaaaaaacaccaaaactgAGACTTTCGAGGAGAAGGACATTAAGCTGAGGGAGTTAAAAGAATTTAATAAGAGTATCAACAAGATGCTGAATGTGGCCATGGATGAAACccctgacctcagatcagtgtTGGAGAAATACTTCCAGCAGGCCCATTTGTCTCTTCCATCTCCGTCTTCTACTCCTTCCAGCCATCGGAGCTCCATAAGCTCTGCCCGCAGCTCTGCCTCTCTCAGGTCTTCTGCGTCCTCAGCCGGCAGCAGCCCCAGGGCCTCTGCACTTCACTCCCCCGTGCTGAAGACTGTGCAACTGGGCTTGGATCTGGCCATGACCTCCCCTCCCCTCACCACCTCCGGACGTTCCAGTTCtgcgagcagcagcagcagcagaaagtTAAAGAACCCATAATGATGGCcgatttattctttatttacgGATGTAATGTCATACTGTATTTTAATGCATTAAAAATCTGTTATTGTTAATTTGGTCTTATTCTGTAACACTTTAAAATAAGGTACACAACATT

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K23729 CCDC39; coiled-coil domain-containing protein 39

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816196.1 True 3089 mRNA 0.47 21 15421740 15431774

Neighbor

gene id symbol gene type direction distance location
dcun1d1 dcun1d1,LOC104947222,LOC107568628,LOC103396145 coding upstream 582 15418264 ~ 15421158 (+)
b3gnt5b b3gnt5,LOC103359375 coding upstream 39410 15375813 ~ 15382330 (+)
LOC120568590 NA coding upstream 111200 15303426 ~ 15310540 (+)
ephb3a LOC103359932,LOC100706883,LOC101473098 coding upstream 155516 15232882 ~ 15266224 (+)
LOC120568936 LOC103360008,LOC104955558 coding upstream 216067 15199302 ~ 15205673 (+)
LOC120568251 atp6v0d1,LOC102795347,LOC102213421 coding downstream 48254 15480028 ~ 15483769 (+)
tsen15 tsen15,LOC102794209 coding downstream 102883 15534657 ~ 15536850 (+)
sec22ba LOC103358005,LOC104948387 coding downstream 115015 15546789 ~ 15548920 (+)
cmpk cmpk1 coding downstream 141477 15573251 ~ 15579524 (+)
zgc:153913 LOC104957208 coding downstream 190280 15622054 ~ 15624462 (+)
G114889 setd9,LOC102796737 non-coding upstream 3692 15416732 ~ 15418048 (+)
G114793 NA non-coding upstream 170521 15161275 ~ 15251219 (+)
G114747 LOC105904583 non-coding upstream 353289 15068149 ~ 15068451 (+)
G114746 NA non-coding upstream 355301 15066123 ~ 15066439 (+)
G114745 NA non-coding upstream 356347 15065090 ~ 15065393 (+)
G114904 NA non-coding downstream 897 15432671 ~ 15432944 (+)
G114905 NA non-coding downstream 4330 15436104 ~ 15437753 (+)
G114909 ripk2 non-coding downstream 12704 15444478 ~ 15455375 (+)
G114944 NA non-coding downstream 117355 15549129 ~ 15549920 (+)
G114991 NA non-coding downstream 193328 15625102 ~ 15625323 (+)
LOC120568540 LOC108238308,LOC100706341,LOC103359463,LOC106530177,LOC102798013,LOC101474556,LOC102303803 other upstream 52960 15338557 ~ 15368780 (+)
G114789 NA other upstream 264541 15151796 ~ 15157199 (+)
ro60 trove2 other upstream 395532 15013743 ~ 15026208 (+)
rgs18 rgs18,LOC106918816,LOC103139989,LOC103479038 other upstream 428657 14985777 ~ 14993083 (+)
LOC120568245 LOC103365337,LOC101481118,LOC102206401,LOC102290843 other upstream 1125747 14287150 ~ 14295993 (+)
asip2b agrp2,LOC105941385,LOC102299529,LOC102795060,LOC103358555 other downstream 40928 15472702 ~ 15478462 (+)
zgc:153115 klf13,LOC104948390,LOC103358333,LOC101073550,LOC105030379,LOC106568757,LOC107752329 other downstream 89008 15520782 ~ 15528769 (+)
slc35a3b LOC103357859,LOC104957008,LOC101481522,LOC102792347 other downstream 122697 15554471 ~ 15568494 (+)
st6galnac3 st6galnac3 other downstream 332909 15764683 ~ 15843094 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other downstream 433812 15865586 ~ 15921531 (+)

Expression


Co-expression Network