si:ch211-13f8.2


Basic Information

Item Value
gene id si:ch211-13f8.2
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15529158 ~ 15535803 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816215.1
GTCTGAGGCTACGGAGACATCAAGGTGCCCTGTTGGAAATATGCCTCCTGGATTTGTGGgattcaaattatattttgtGATTTTAGCAGGAAAGCTCTTCCTGTACACCAGCACAGAGGAGCTGCCAGCTGATCATCTCCTCCAACCAGCCCTGCAGGAGTCCTCTGTGCTGAAGCCCACAGTGCTGATCACCATCCTCGCACGCAACTCACAACACAGCCTCCCTTACTTCTTAGGATGCATAGACCGATTGGACTATCCAAAGGACCGCATTGCCATCTgGGCTGCCTCTGACCACAGTGTGGACAACAGCACAGCCATGCTTCAGCAGTGGCTCAGAGGAGTTCAACACCTGTACCACTCGGTGGAGTGGAGGCCTATGGAGCAACCCGGCTCCTATGCAGATGAGCAGTCTCCCAAACACTGGCCCGACTCTCGGTTCACCCATGTGATGAAGTTAAAGCAGGCAGCACTCAGAACTGCCAGACGACTGTGGACTGACTACATTCTGTTTGTGGACAGTGACAACTTGCTGACAAACCGCCAGGTGCTATCTGACATGATAGCAGAGAATCTGACAATTGTGGCACCCATGTTGGAATCAAAAGGCCTTTATTCCAACTTCTGGTGTGGCGTGACTCCTCAGGGCTACTACAGGCGAACCCCAGAGTATATTCCCATCCGTAAATGGAAGCAGCAGGGCTGCTTTGCAGCCCCCATGGTGCACTCCACCTACCTGCTGGACCTGAGGCGCAGAGCTAGCCAAGCATTGGCCTTCCACCCTCCTCACCCCCAATACCCCTACCACTTGGATGACATCATGGCCTTCGCTTTCTCTTCACGGCAAGCAGGGATTCAGATGTATGTTTGCAACAAGGACCATTATGGATATTTACCAGTGCCCCTTAGACAAGACCAGACactggaagaagaagaggagagttttaccCACACACTGACAGAGGCACTCATTGCCCACACCATGGAGCCTTCACAGTATATGCACATTGTGCCTAAAGAACCAGGAAAGATGGGATTTGATGAGATCTTTCTGATCAATCTGAAGCGCCGCTCAGATCGGCGGGACAGGATGTTGAGTTCTTTGGCTGTCCTTGGCATTAACACTACACTGACAGAAGCCGTGGACGGCAAAGCCTTGAACTCCTCTCAGCTGCAGGCCATGGGTATAGACATGCTGCCCGGGTACAGAGACCCATATTCAGAGCGCGTGCTGACTAGAGGGGAGATTGGCTGCTTCCTCAGCCACCACAAGATCTGGAAACAGGTGGTGCAGCAGGAACTGCAGCAGGTGCTTGTGATGGAGGATGATGTGAGATTTGAGCCCCGCTTTTGCAGCAGGCTGGTGACTATCATGGAGAATGTACAAAGAGTGGGACTTGAATGGGACCTCATTTATGTAGGCCGTAAGCGGCTGCAGGTGAAGGAGCCAGAGAAGTGGGTGAAGGGAGTCAGTAACCTTGTACACCCAGGCTACTCCTACTGGACCTTGGGTTATGTCCTGTCACTGAATGGGGCCCAGAAGCTCCTGCAGGCCAAACCCCTTAACAAAATGCTGCCTGTTGATGAGTTCCTACCTATCATGTTCAACAAGCACCCCAAAGACGAGTACATGCAGTATTACAAGCAGAGGGACCTGAGAGCGTTTTCAGTGGAGCCTCTACTGCTCTTCCCTACACACTACACTGGCGAGCCTGGCTACTTCAGCGACACAGAGACCTCCACCATCTGGGACGACGAGGCCGTGGAAACGGACTGGGACCGAGACGGAGCCAAACACACGCGGGACCGGGAAACTGAGGAAGTAGGGTTGCGGCCTGTGGCTCCTCACTCAGCTCGCGGTGGCGTGCCTCGTCTCTCTGCCGGAAACAGAGATGAACTCTGAGGGGGACTTATGTCATGTTACACACCATGGCCAGTTTAACATCCCCAGGGTGGCCCTGGGGCACACATTAGCAACTGGGCCCCTATTAAGCTTGaatcccccctccctcccctcccctctctgtgCAATGTGTACAGTTTTTCCTAAGATGGAACAGATCTTCTGCGTTGATTTGATTACTTGTGcataaaactgaaataattaAGGTATAAAAACTACATTTGAGCACAAAGACCCTCTCCAAGACTCACTTTAAAGCCCTAATCATCTCAGTTGATATTAGGCTTTGGTGgatttttaaacacattttcaattAAATTAGCACAAAACTATTAAGCCACAGTAGGTTTAGAGCTTTTGGGGCCCCTAGAGCTGTCAAGTCCCAGAGCAGTTGCCTTGGTGGTAATCCACCCTTCCACACACCAGGACCACCTGTCGAGACCAAGACTGGCAAATAACAGTGTATGTGTCTCTGCAAAACTAAAATGTCTTCAGGAATAATAGATTCCATGTAATTATGTTACCACAACACCAATCTGACTTAAAGTAATAAAAGCCCATAAATACA
>XM_039816216.1
ACTGCGGAGCACAAGAAACACAGTCAGGAAAGCTCTTCCTGTACACCAGCACAGAGGAGCTGCCAGCTGATCATCTCCTCCAACCAGCCCTGCAGGAGTCCTCTGTGCTGAAGCCCACAGTGCTGATCACCATCCTCGCACGCAACTCACAACACAGCCTCCCTTACTTCTTAGGATGCATAGACCGATTGGACTATCCAAAGGACCGCATTGCCATCTgGGCTGCCTCTGACCACAGTGTGGACAACAGCACAGCCATGCTTCAGCAGTGGCTCAGAGGAGTTCAACACCTGTACCACTCGGTGGAGTGGAGGCCTATGGAGCAACCCGGCTCCTATGCAGATGAGCAGTCTCCCAAACACTGGCCCGACTCTCGGTTCACCCATGTGATGAAGTTAAAGCAGGCAGCACTCAGAACTGCCAGACGACTGTGGACTGACTACATTCTGTTTGTGGACAGTGACAACTTGCTGACAAACCGCCAGGTGCTATCTGACATGATAGCAGAGAATCTGACAATTGTGGCACCCATGTTGGAATCAAAAGGCCTTTATTCCAACTTCTGGTGTGGCGTGACTCCTCAGGGCTACTACAGGCGAACCCCAGAGTATATTCCCATCCGTAAATGGAAGCAGCAGGGCTGCTTTGCAGCCCCCATGGTGCACTCCACCTACCTGCTGGACCTGAGGCGCAGAGCTAGCCAAGCATTGGCCTTCCACCCTCCTCACCCCCAATACCCCTACCACTTGGATGACATCATGGCCTTCGCTTTCTCTTCACGGCAAGCAGGGATTCAGATGTATGTTTGCAACAAGGACCATTATGGATATTTACCAGTGCCCCTTAGACAAGACCAGACactggaagaagaagaggagagttttaccCACACACTGACAGAGGCACTCATTGCCCACACCATGGAGCCTTCACAGTATATGCACATTGTGCCTAAAGAACCAGGAAAGATGGGATTTGATGAGATCTTTCTGATCAATCTGAAGCGCCGCTCAGATCGGCGGGACAGGATGTTGAGTTCTTTGGCTGTCCTTGGCATTAACACTACACTGACAGAAGCCGTGGACGGCAAAGCCTTGAACTCCTCTCAGCTGCAGGCCATGGGTATAGACATGCTGCCCGGGTACAGAGACCCATATTCAGAGCGCGTGCTGACTAGAGGGGAGATTGGCTGCTTCCTCAGCCACCACAAGATCTGGAAACAGGTGGTGCAGCAGGAACTGCAGCAGGTGCTTGTGATGGAGGATGATGTGAGATTTGAGCCCCGCTTTTGCAGCAGGCTGGTGACTATCATGGAGAATGTACAAAGAGTGGGACTTGAATGGGACCTCATTTATGTAGGCCGTAAGCGGCTGCAGGTGAAGGAGCCAGAGAAGTGGGTGAAGGGAGTCAGTAACCTTGTACACCCAGGCTACTCCTACTGGACCTTGGGTTATGTCCTGTCACTGAATGGGGCCCAGAAGCTCCTGCAGGCCAAACCCCTTAACAAAATGCTGCCTGTTGATGAGTTCCTACCTATCATGTTCAACAAGCACCCCAAAGACGAGTACATGCAGTATTACAAGCAGAGGGACCTGAGAGCGTTTTCAGTGGAGCCTCTACTGCTCTTCCCTACACACTACACTGGCGAGCCTGGCTACTTCAGCGACACAGAGACCTCCACCATCTGGGACGACGAGGCCGTGGAAACGGACTGGGACCGAGACGGAGCCAAACACACGCGGGACCGGGAAACTGAGGAAGTAGGGTTGCGGCCTGTGGCTCCTCACTCAGCTCGCGGTGGCGTGCCTCGTCTCTCTGCCGGAAACAGAGATGAACTCTGAGGGGGACTTATGTCATGTTACACACCATGGCCAGTTTAACATCCCCAGGGTGGCCCTGGGGCACACATTAGCAACTGGGCCCCTATTAAGCTTGaatcccccctccctcccctcccctctctgtgCAATGTGTACAGTTTTTCCTAAGATGGAACAGATCTTCTGCGTTGATTTGATTACTTGTGcataaaactgaaataattaAGGTATAAAAACTACATTTGAGCACAAAGACCCTCTCCAAGACTCACTTTAAAGCCCTAATCATCTCAGTTGATATTAGGCTTTGGTGgatttttaaacacattttcaattAAATTAGCACAAAACTATTAAGCCACAGTAGGTTTAGAGCTTTTGGGGCCCCTAGAGCTGTCAAGTCCCAGAGCAGTTGCCTTGGTGGTAATCCACCCTTCCACACACCAGGACCACCTGTCGAGACCAAGACTGGCAAATAACAGTGTATGTGTCTCTGCAAAACTAAAATGTCTTCAGGAATAATAGATTCCATGTAATTATGTTACCACAACACCAATCTGACTTAAAGTAATAAAAGCCCATAAATACA

Function

NR:

description
procollagen galactosyltransferase 2-like

GO:

id name namespace
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K11703 GLT25D; collagen beta-1,O-galactosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816215.1 True 2471 mRNA 0.51 12 15529158 15534187
XM_039816216.1 False 2409 mRNA 0.51 13 15529158 15535803

Neighbor

gene id symbol gene type direction distance location
LOC120568593 LOC104948391 coding downstream 10230 15484190 ~ 15518928 (-)
LOC120568743 NA coding downstream 66559 15452439 ~ 15462599 (-)
LOC120568994 LOC103358814,LOC104920922,LOC108238208 coding downstream 77293 15444472 ~ 15451865 (-)
setd9 setd9,LOC102796737 coding downstream 110969 15417025 ~ 15418189 (-)
LOC120569143 NA coding downstream 116099 15412986 ~ 15413059 (-)
zgc:55943 clg18h1orf21,LOC104920916,LOC103358173,LOC102298056 coding upstream 2093 15537896 ~ 15547357 (-)
imp3 imp3 coding upstream 14057 15549860 ~ 15553969 (-)
fam78ba LOC108248539,LOC106530399,LOC103357776,LOC101481240,LOC104920913,LOC105925252,LOC103479089 coding upstream 33027 15568830 ~ 15573140 (-)
bcl6ab NA coding upstream 44973 15580776 ~ 15587884 (-)
cldn1 cldn1 coding upstream 80594 15616397 ~ 15620659 (-)
G114883 NA non-coding downstream 121531 15407377 ~ 15407627 (-)
LOC120568803 NA non-coding downstream 135899 15387478 ~ 15393259 (-)
G114836 NA non-coding downstream 262934 15264520 ~ 15266224 (-)
G114752 NA non-coding downstream 447178 15076141 ~ 15081980 (-)
G114733 NA non-coding downstream 526113 15001144 ~ 15003045 (-)
G115017 rps8 non-coding upstream 185216 15721019 ~ 15727229 (-)
G115041 NA non-coding upstream 199251 15735054 ~ 15735281 (-)
G115042 NA non-coding upstream 199677 15735480 ~ 15735895 (-)
G115043 NA non-coding upstream 200726 15736529 ~ 15736827 (-)
G115048 NA non-coding upstream 206021 15741824 ~ 15745228 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other downstream 224548 15290082 ~ 15304610 (-)
G114680 NA other downstream 732114 14795918 ~ 14797044 (-)
LOC120568687 NA other downstream 910934 14613613 ~ 14618224 (-)
tfr1a NA other downstream 1560347 13949871 ~ 13968811 (-)
dis3l2 dis3l2 other downstream 2046933 13469531 ~ 13482225 (-)
G115164 btf3l4 other upstream 608357 16144160 ~ 16148121 (-)
cc2d1b cc2d1b other upstream 646851 16182654 ~ 16201698 (-)
mppe1 mppe1,LOC102781954 other upstream 781615 16317418 ~ 16327426 (-)
LOC120568735 LOC103355759,LOC101465864,LOC100696456,LOC102781658,LOC102293165 other upstream 795149 16330952 ~ 16335956 (-)
G115312 ralbp1,LOC102778314 other upstream 1101305 16637108 ~ 16639812 (-)

Expression


Co-expression Network