tsen15 (tsen15,LOC102794209)


Basic Information

Item Value
gene id tsen15
gene name tsen15,LOC102794209
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15534657 ~ 15536850 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816218.1
GACTTATACTGTAGCACGCCGGCAAACCTGAAAACACAACTCACACATATGGCCGTGACAGCAGCAGCGAAATGTCCTGGCATTAGAAAGTGGTTAATGAGACAGTAGTCTGTAGACACGTTCACTAGTTAACATGTCAGAAGAGTCAAACAGAGCAGATGTGTCAGAGAAACCTCCGCCTCCGAACTGGATCCTTCAGCACCCAACATATCAGCACATGAAGAGTCTGGAGGTTGAGGACAGTGCACAAGTACACGTAGCTTTCCTCGTGTACATGGATCTTACCGAAGTGCGTCAATGGAAAGAGGTGTCTTGTGTCAAGAGTCCTGAGCTGCAGGTGGTTTTGCtggaagggagggagaaggaaggAGCACCTGTCCAGACAGTTCTTCCACTGCCTGCTCACCGATCTCTGAGCCACAAAAGCATACGTCAGGTTCTGGACAGAGGCTTTCCCATGCTGTTGTGTGCAGTAGCTTCTGACTCCACCCTTGTCTACCAGAGGATGACAGATGGGTTGGTGACACCGGACCCTCCCGCTGGCCCCTTCCAGGATTTGGGACGCCGGCAGCACCGGAAGAGACGGCAGAAGCACTGACCAGCTGGAATGAGAAGACAccttggtgttgttggtgaaaCATAGAAGAGCAGGATGGGACAGGCAGTCGGGTCTGTCTGTGTAAGCCGctcctaaaaaaaataaaaatacaaaggtGTACTGAGAACATCGCAGCAGGTGCAAATGGTCCGAACCACAGTGCCCTTCTAGGTGCTCTCAGTAAGAAACAACCAGCTGCATCCAACCAGTGAAGTCGAGTTCAGTGGTTCCCAATGTTTTGGCTTGTGACTCCTTAAAACTTTTGACCCAGTATGTGGTTACATGCTTTCCTCAAAACCTTCGTGCTGGACCTGATGAGTTGGATCCCAAGGCATAAACAATTTGTTTTGGATACATCACTACTAGAGCCTGACTgattcttgatttttttttttaggctgatACAAATATTGGTATTTGGAAGttcaaaaaatgtattgattatTAAGACATACTTTTTATTATCATAaagattttttgtattttattttgttaattccTTTAAAGGCGCTGTACTCGATATCCAGCATGTTGTTATAGcagtaaacaaatattttctATGGaaaaatatagtggagtaaaggcatcctgagcagagaatgaagtcacactacctccgtg

Function

symbol description
tsen15 Predicted to enable nuclease activity and nucleic acid binding activity. Predicted to act upstream of or within mRNA processing and tRNA splicing, via endonucleolytic cleavage and ligation. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human TSEN15 (tRNA splicing endonuclease subunit 15).

NR:

description
tRNA-splicing endonuclease subunit Sen15

GO: NA

KEGG:

id description
K15324 TSEN15; tRNA-splicing endonuclease subunit Sen15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816218.1 True 1219 mRNA 0.46 4 15534657 15536850

Neighbor

gene id symbol gene type direction distance location
LOC120568251 atp6v0d1,LOC102795347,LOC102213421 coding upstream 50888 15480028 ~ 15483769 (+)
ccdc39 LOC104962657 coding upstream 102883 15421740 ~ 15431774 (+)
dcun1d1 dcun1d1,LOC104947222,LOC107568628,LOC103396145 coding upstream 113499 15418264 ~ 15421158 (+)
b3gnt5b b3gnt5,LOC103359375 coding upstream 152327 15375813 ~ 15382330 (+)
LOC120568590 NA coding upstream 224117 15303426 ~ 15310540 (+)
sec22ba LOC103358005,LOC104948387 coding downstream 9939 15546789 ~ 15548920 (+)
cmpk cmpk1 coding downstream 36401 15573251 ~ 15579524 (+)
zgc:153913 LOC104957208 coding downstream 85204 15622054 ~ 15624462 (+)
LOC120568632 LOC107602512,LOC107688509,LOC107714866,LOC107674362,LOC104964691,LOC102306697 coding downstream 93081 15629931 ~ 15674694 (+)
si:ch211-106k21.5 NA coding downstream 141544 15678394 ~ 15690444 (+)
G114909 ripk2 non-coding upstream 79282 15444478 ~ 15455375 (+)
G114905 NA non-coding upstream 96904 15436104 ~ 15437753 (+)
G114904 NA non-coding upstream 101713 15432671 ~ 15432944 (+)
G114889 setd9,LOC102796737 non-coding upstream 116609 15416732 ~ 15418048 (+)
G114793 NA non-coding upstream 283438 15161275 ~ 15251219 (+)
G114944 NA non-coding downstream 12279 15549129 ~ 15549920 (+)
G114991 NA non-coding downstream 88252 15625102 ~ 15625323 (+)
G114998 NA non-coding downstream 140243 15677093 ~ 15677343 (+)
LOC120568726 NA non-coding downstream 209327 15746177 ~ 15759108 (+)
G115055 NA non-coding downstream 306304 15843154 ~ 15848292 (+)
zgc:153115 klf13,LOC104948390,LOC103358333,LOC101073550,LOC105030379,LOC106568757,LOC107752329 other upstream 5888 15520782 ~ 15528769 (+)
asip2b agrp2,LOC105941385,LOC102299529,LOC102795060,LOC103358555 other upstream 56195 15472702 ~ 15478462 (+)
LOC120568540 LOC108238308,LOC100706341,LOC103359463,LOC106530177,LOC102798013,LOC101474556,LOC102303803 other upstream 165877 15338557 ~ 15368780 (+)
G114789 NA other upstream 377458 15151796 ~ 15157199 (+)
ro60 trove2 other upstream 508449 15013743 ~ 15026208 (+)
slc35a3b LOC103357859,LOC104957008,LOC101481522,LOC102792347 other downstream 17621 15554471 ~ 15568494 (+)
st6galnac3 st6galnac3 other downstream 227833 15764683 ~ 15843094 (+)
st6galnac5a st6galnac5,LOC103370426,LOC102788813 other downstream 328736 15865586 ~ 15921531 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other downstream 689457 16226307 ~ 16228551 (+)
LOC120568419 LOC102779359 other downstream 902175 16439025 ~ 16527682 (+)

Expression


Co-expression Network