spidr


Basic Information

Item Value
gene id spidr
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21798956 ~ 21833615 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816222.1
AATAATCAAACACACCCCTCTTCAAATTGAGCAACCGCTAGAAGAACTATGTGCTGTTGcctgctaacgttagttagtttGCAAAACTAGTAAGTTAGCAACCACCGGGAAACCTCTATTGCGCAATGATGGGTTAATACAAGGGGATTTGATTGGATAACGTTAATGTTCTGTGGACACACAttaactaacgttacagctgtggCTTAAACTTAACTCTACTTTGTCGCCATGTCTTCCAGAAAGCGTAAAAGATACTACAAGGATATAAAGTGTGTTTTCTTTCCGGACGATGTCAAAAATGGTTTACCAAAAGTGGGAAGAGAGCCACCATCACTTTCATCTGTGTCTTCCGCCAAGAGCTGGGAGAAGTGTGGAGACAGTTTTCTGGACACTCCAGTGATTCAGAACCTCAAGTCATCAGGAAGGAAACTCTCTGACATAAGAAGGTTGGCTCAGTCCCCTGCTTTAGTCCAGACCAGTGCTGTTCACTGTAATGAGGACCCAGTGCACATTGCGTGGAGCTCCAGTGACGGTGAACAGTCTGATGATGAGAACCAGAAGCAGCATCTCTCCAGAGTTGCGGCTCAACAGCAACAACATCCTCAGAGACCAGTGAGACCCACAGCTCCCATACAGTCTTACACAAGAGTGCTGCACATGCTCAGCACTGATAAAGATGACCTTCCTCTTATTGACACAGACAGTGATCTGGATGAATGTGATGCTGAAAAGGACAGCGGGCAACAAATCTCTGACTGTGAGTCGGAGTCCTTTGACGAAAAGCCAGAAGATTTACCTCTTAAACCTACAAATATGACAGAGCTAGAGATCTCAGGTTACGTGTCTGATGGCGAGAGTATTGATGGCACAGTGACTTTGAGTAGACCGGACTCTCCTCTCCAAACTGGTGAGGGCAGCAAAAGGTCAATCAGTGACTGGGTCAGATCTGCTCAGGCGATGCTGCAGACGCCTCAGAAACCGCAGTCCAAGATGCTGACCAAGACTCCTGAAGACTCCgccaaaaagaaaaggaaatttCAAAGTGGAGGTCTGGCGGAGAGGCTGAATCGACTCCAGTGCAGACAGAGGTCAGCTGTTAGCTTCTGGAGGCACCAGTCCATCTCCGACACCTCAACAACAGTGGACAGGCCTGGCGTGCTGGTGCTGGAGGTGCTGGAGATTCAGGAGGAGTGCAGCATGCAACTGGCACACTGTGAGCACCACCGGCCTCCCGGAGAGGGCCACCAACACAGTAACCCTCTCTCTGAGTCAAAAGCTTGTATGCTGGTGTTGTTCAACAGAGAGACTGCTGCCCAGCTGACTCCTGCACCCAGAGATATCATCCACATATACCCGCCATGGCAAAGTCTTTCCATAGAGGGTTTCAGCTGTGACATTATTCTGAACACACACTTCAGCCAGAAAGTCTACTCTGCTACCAAACCAGCCAACATGTCCATGCCTAGAGGCCTGCTCTCAGCAAAAAGGTGCCATCCGTATTCTTTGTGCAAGATATTTGGACTACTGGAGGAATGCAGGACCACAGAGGGGATCAATGCCAAACACGTGCGGGATATGAACTCTACTGTTTACTCTCAGGGCTGGTACAGGGCTGTGTCTGGACTTGATACACAGCAGCTCACTGCCTCACAACTCTGTGGGCCAAAGGTCTTttctgtcagcagcagcagcagcctgtcaAACCAGTCACCAACATTACACTTCCAAATgCTCTGTGTGCTTGTCCAGGATAGTTACGGGATGTTCAGCGTGGTCCAACTCGACCTCCTGCCCTACAAGGACGACCTCCAGCAGTACTGCCGCATGTGGCAGGGGAGGACCTGCTTGCTGAGAGGCATTAAAGTGGTGCAGCGGGTCACTCGAGAAAGGAACACCAGGCTTTTCAGCTTGATAGACAGTCTGTGGCCCCCAGTGATGCCTCTTAAAGACCATGGAAACACACCTAGTATGTCCAGTGAAGGTAAACCTGCAGGTCCAGCTCCGAGTTTCTGCTACCTGCTGTCTGGTCAAGAGAGCTCAGTTGAACCCACTCAGGAGCAGATCGTTTCCCCGCTTTACCTTCCTCCCACAAAACAAAACTTGCGAGACATACTGCAGagtgaGCTTAAAACCTGCTGCTTCAGTTTTGTTGCCACTGTTCTATACAAGAGAATAATGCAGAGCAGTGATGTAGGACAGGGTGAGGTTTGGTTGGTGCTGACAGACCCCAGTCTTCAGGAGGAGCAGCTCGAGAGGCCATGCAGGCGAACGGTGGCCCTTTGTGTGAGCACTTCCTGTGTGCTCACTTCCTCGGTCCTCGAAGCACTAAATTCCCCCGCTGCCTGTCGCGTGTCATTCAGAGATGCCATCAGAGAACATGGTGTTCTCCTGTGTGTGGAGCAGTCAGTTGTTGAGATGTGCTCTGTGGAGCCTGAGGGCAATCTCAAGTCGTCAGCCAGACCAGAGTCACTGTCTGAGCCTCAGGCAAAGACCCTGCCCCAACCTGTGAGACTGGATTCCCTGAGTCCTGAGATCACACCCAACTCCATCTGCTCTCTCTCAGGGATGATAGTTGGTGTGGATGAGAACACAGCTTATTCCTGGCCTGCCTGCAACCACTGTGGAAGTGACAACTTAGAGATGTTGGCTGAAAGACCTCAGAACTTCCACTGTGTTTCTTGTAAGTCGGTGGTGGACAAGCCGGACACAAGGATTCAACTGGAAGTGCTCCTAACTTCTTCATTAAGTAATTGCACTTTGAAGGTTAAGCTGCAGCAAAAGACGATCATGTCCATCATAAACACTGCAGCGCTGGAGGGTAATGAGGTGGCGGAGCTGTTCCTAATCTTGCAAATACAGTATTATTTGCATTGTATGCATTCATGCTCTTTACCAGGGGAACTCttCCCAGGTTACGATGTGGAGAATGTCCTGGGAAAAGAGGTGGGCCCCCTCGCCGCTTATGTCCGAGTCGTCACCAGGAAACCTGCCCTCTGGATCGGCCTGGAAGAAATCTGCCTCTGAGGCTGTCAGAGCAAGTAGGCTAGCTAATGATATCAATCCACAGGCTTCAGTTGGCTCCAAGGATCTGCACACTAGGCCTTGGTCTGAGCTAGTTCAGCCCCCCTGAAGGCCTCCCTGACAGCTTGAGGCTGTACTGAAGTGAACGGGTTGTAAGAAGACAAGGTCTTGTTTGTGTTAATGATATGTGATCCTGTGGACCAGGAGTTGACAGCCCAAGGGTAGACCAGTGGCATGCAATCTGTCAAAGCAGCCCACGTCGTTTATAAACTGGGACTTTTGGCTGTAAATACATTTAAGTGGTCTAAAAACTTTTCCCAACTCCTCTACTTTATTTAAGATTACTGACAAGTCAATAAAAGTTGTATTTTTGCTGA

Function

NR:

description
DNA repair-scaffolding protein isoform X1

GO: NA

KEGG:

id description
K22806 SPIDR; DNA repair-scaffolding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816222.1 True 3401 mRNA 0.49 21 21798956 21833615

Neighbor

gene id symbol gene type direction distance location
mcm4 mcm4 coding downstream 4353 21785299 ~ 21794603 (-)
ube2v2 ube2v2,ub2v2 coding downstream 15065 21767121 ~ 21783891 (-)
sntg1 sntg1 coding downstream 94851 21666739 ~ 21704105 (-)
agap3 agap3,LOC102197517 coding downstream 227336 21449437 ~ 21571620 (-)
asic1c asic3 coding downstream 476472 21303361 ~ 21322484 (-)
mapre2 mapre2 coding upstream 899 21834514 ~ 21847366 (-)
dtna NA coding upstream 15288 21848903 ~ 21869956 (-)
rpe65a rpe65,LOC103479670,LOC108241705 coding upstream 155197 21988812 ~ 21994173 (-)
LOC120568177 LOC103364111,LOC100699442,LOC102776848,LOC102214268,LOC101483916 coding upstream 171224 22004839 ~ 22015846 (-)
efcab14 efcab14 coding upstream 183690 22017305 ~ 22025067 (-)
G116758 pcmtd1 non-coding downstream 138489 21658679 ~ 21660467 (-)
G116743 NA non-coding downstream 203650 21592739 ~ 21595306 (-)
G116692 NA non-coding downstream 498874 21297415 ~ 21300082 (-)
G116651 NA non-coding downstream 589183 21208742 ~ 21209773 (-)
G116582 NA non-coding downstream 691238 21107514 ~ 21107718 (-)
G116893 LOC104955993 non-coding upstream 164179 21997794 ~ 22002858 (-)
G116922 NA non-coding upstream 344678 22178293 ~ 22178534 (-)
LOC120568857 NA non-coding upstream 348349 22181964 ~ 22205991 (-)
G116954 NA non-coding upstream 361709 22195324 ~ 22200980 (-)
G117052 NA non-coding upstream 796281 22629896 ~ 22632268 (-)
higd1a higd1a other downstream 788380 21008048 ~ 21010576 (-)
tmie tmie,LOC102776014 other downstream 803389 20984801 ~ 20995567 (-)
xcr1b.1 NA other downstream 2003197 19793342 ~ 19795759 (-)
G116138 NA other downstream 2333576 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 2576230 19221791 ~ 19222726 (-)
G116969 NA other upstream 428383 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 1512103 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 1596751 23430366 ~ 23430992 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other upstream 1635005 23468620 ~ 23491612 (-)
LOC120568990 LOC101487892,LOC104941256 other upstream 2017458 23851073 ~ 23856621 (-)

Expression


Co-expression Network