LOC120568617 (rnf212b)


Basic Information

Item Value
gene id LOC120568617
gene name rnf212b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 12612142 ~ 12616610 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816234.1
GTTAAAAGTTGGCTGTATAAATTTACCAGAAACGGGGTTCTTCATTCCTCACTCATCCAATCCCAACAAAGAACGATATCCGCTATTTGTACTTCGGCAGAGGCGGGACTTCACTGCTGAGCCGGCTGAAAAATAACTTTTCTGTTAGGATACAACTTCAACTACTTTTGAGCAGGGCGACAGAGGAGGAAACAACCCACAGGACTAAAAATGGACTGGTTCCACTGTAATCAGTGCTTCACAAGGAGAGGGTCGAAGTTTGCTGTGTCCAGCTGTGGCCACATTTGCTGTGAAGCATGCATTAAATCTCAGAAGTGCAGTGTATGTGGGGCCAGCTGCAGTTATCTGCCCATCACAGATGAGATGAAGCCACAGGAAAGGGTGTTTTTCAAGGACCCTGTGAAGCTCATCCAGTCACGGCTGGAGCACACTTCACAGATTGCCCTTTTTCAGcggagacagatggagagagtcACGGCACACTTCAAGCATAAGTCTGTTGAACTGGAAAGGCATCTGAAGGAAGTCAATGAGCAGGGTTACAGAAGGCAACTCTCCGAGCTGAAAAGAGAAAATGCCGACTTAAAAAAGCAGCTTTCAGATCTGAAAAGAGAGACTGCTGATTTGAAAAAGCCACTGTCTCAGCGGAGGGTTTCTCCAGGACAGTTTCATATAGATGGCACTCAAAGGATGTCACTACCTGTGGCTGTCACCCCTCCAGTTACCCCTCGTTCAAGAACTATGAGTTACTTAGGCTCAGCAGAGTCTCAGGCGTGGGCCAGAGACAGAGGTCCCCATCTACCCTCCAACACCACTCCTGGATCCGCTACCTCTATTTCGAGCCATAGTTCTCTTCGTGAACACGTACTCAgaacacCGACGTCCTTTAGCACTCCTACAAGATCTCAGCGTCAGACTCctaatgtcttccagttccagtttaTGAGTGGATTATCAACACAGTCACCCAGGCGTTAATGAAATGGCCCCTAACAATTGTGGGGACATGTTTATCGTTAAGGAGTGCTCAGCCACGTGTGTGTTTATCAGGACCGTCACGTCTTTTTTGGAGATACAAATTTGTTTTTGCCCAGTAACAGTTGGCACCAATGACTGAACGTCTTGTACATCGCTGAGTATACGTATTTTATAATTGTTAAGTTTACATGGATGTCATACTGGTGTTACCATGTGGTTCCTCTGTTGGTGAATTAACTAGCCACATTGTCTTATTGATCATTGGTTAATTAATGGTCATTTCtgcatattgtttttttctcacaacAGAGAATATACAttgatgaaaaataaatttgtCAGAATCAGTTGGAGtcattacagcacacacaaaaaaccatTGCTTG

Function

symbol description
rnf212b Predicted to enable SUMO transferase activity. Predicted to be involved in homologous chromosome pairing at meiosis and protein sumoylation. Predicted to act upstream of or within reciprocal meiotic recombination. Predicted to be active in synaptonemal complex. Orthologous to human RNF212B (ring finger protein 212B).

NR:

description
PREDICTED: RING finger protein 212B isoform X2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816234.1 True 1364 mRNA 0.45 13 12612142 12616610

Neighbor

gene id symbol gene type direction distance location
LOC120568040 NA coding upstream 984 12609157 ~ 12611158 (+)
zp3f.2 NA coding upstream 3998 12605394 ~ 12608144 (+)
slc7a8b slc7a8 coding upstream 30930 12565994 ~ 12581212 (+)
prmt5 prmt5 coding upstream 49164 12555686 ~ 12562978 (+)
lrrc24 LOC103370491,LOC104954089,LOC102776146,LOC102302164 coding upstream 522581 12074976 ~ 12089561 (+)
si:ch211-14a17.10 NA coding downstream 15875 12632485 ~ 12663198 (+)
acin1a acin1 coding downstream 48622 12665232 ~ 12684696 (+)
trim110 cbln3,LOC102310989,LOC102795120,LOC102215561 coding downstream 104106 12720716 ~ 12725372 (+)
cbln12 cbln3,LOC103360302,LOC104927970,LOC101077223,LOC104956581 coding downstream 109002 12725612 ~ 12728919 (+)
chd8 chd8 coding downstream 113835 12730445 ~ 12751968 (+)
G113843 LOC104931181,LOC104949953,LOC107384241,LOC103360313 non-coding upstream 9220 12601183 ~ 12602922 (+)
G113811 NA non-coding upstream 255421 12356340 ~ 12356721 (+)
G113782 NA non-coding upstream 390458 12221376 ~ 12221684 (+)
G113778 NA non-coding upstream 402702 12208714 ~ 12209440 (+)
G113777 NA non-coding upstream 403824 12208104 ~ 12208318 (+)
G113852 NA non-coding downstream 9469 12626079 ~ 12627519 (+)
G113938 NA non-coding downstream 161730 12778340 ~ 12779398 (+)
G113956 NA non-coding downstream 245015 12861625 ~ 12874310 (+)
G114000 NA non-coding downstream 410469 13027079 ~ 13028170 (+)
G114008 LOC104953400 non-coding downstream 535489 13152099 ~ 13153594 (+)
ap1g2 LOC106903824,LOC103138413,LOC106934762,LOC101486457,LOC103478890,LOC100694377 other upstream 12302 12582642 ~ 12599840 (+)
LOC120568189 nop9 other upstream 445865 12157449 ~ 12166277 (+)
abhd4 abhd4 other upstream 484120 12122669 ~ 12128022 (+)
pkia pkia,LOC102780447,LOC102205080 other upstream 1265917 11332568 ~ 11346225 (+)
LOC120568835 NA other upstream 1725664 10885595 ~ 10886478 (+)
LOC120568152 LOC104963178 other downstream 284929 12901539 ~ 12907243 (+)
LOC120567760 LOC103360284,LOC108238605,LOC104963178 other downstream 294829 12911439 ~ 12919198 (+)
G113979 LOC104959684 other downstream 312605 12929215 ~ 12975637 (+)
LOC120569010 NA other downstream 335938 12952548 ~ 12960349 (+)
col6a1 col6a1 other downstream 393965 13010575 ~ 13074594 (+)

Expression


Co-expression Network