cldn1 (cldn1)


Basic Information

Item Value
gene id cldn1
gene name cldn1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 15616397 ~ 15620659 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816257.1
GTGTTCCCTGAGGATGCACAGGTAGACAGCACTGTTTGGCATCAGATCCACCACCCCAAACCTCCAGGAACTACATCGAGAAGGATTTTGGAACTTTTCTAACTTTGATCATTTCCCATTTTTAGTTTCTGACGTGAAACGATGGCCAACACAGGCATACAGCTTCTCGGCTTCACACTGGCCTTCCTGGGCTTCATTGGCTTGATAGCATCCACAGTCATGGTGGAATGGAAAGCTTCATCGTATGCAGGAGACAACATCATCACAGCTCAGGCGTTGTATGAAGGACTGTGGAAGACCTGTGCATCACAGAGCACTGGTCAAGTTCAGTGTAAAGTGTATGATTCACTTCTCCAGCTACCAGGGATCGTACAGGGCACACGAGGGCTGATGCTGTGCGCCATCATGATGTGCTTTATTTCTATCATGTTGGACATGGTGGGCATGAGGTGCACCACCTGTATGTCTGAACAACCGGAGCAGAAGGACAAAGTGGCTCTAGCTGGAGGAGTTATCTTCATTATCGCTGGTGTGCTTGCTATGGTGGGAACATCTTGGTATGGTCAAAGAATAACCCAGGAATTCTACGACCCGTTCACTCCGACTAATTCAAAGTATGAATTTGGGAGTGCCCTGTTTGTCGGATGGGGAGCTGCCGCTCTCATCATTATAGGAGGAAGCTTCCTCTGCTGCAACTGCTCCAGCAAGGGCTCAGGGAAATCTCCACGGTACCCAGCGCCCCGCTCTGCTGGCCAGCCGGACAAGAACTTTGTCTAGAACAATCACTCCATCCAGCCTCCACTCAAGGAAAATTGCTGTCTTTACAGGGAATTTACTTCTGTATGTCATTTGGATTTTATTGCAACATGTACGGTATATTTGCAGGTGTTATAtttggtatatgtttatatttgttGGTAAATACACTCCATGACAACAGTTTTTACCCATTGAGTATAACTCTGCTGAGGGTgtgacagttttatttttgttatttgctGTTTGAAATCTTGCCTTTATTCTTGCATATCTTTTACAATAAAATCCTCATTACTTTA

Function

symbol description
cldn1 Predicted to enable structural molecule activity. Predicted to be involved in bicellular tight junction assembly and cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in eye; gill; integument; and ovary. Human ortholog(s) of this gene implicated in Crohn's disease and atopic dermatitis. Orthologous to human CLDN1 (claudin 1).

NR:

description
claudin-1-like

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816257.1 True 1058 mRNA 0.45 4 15616397 15620659

Neighbor

gene id symbol gene type direction distance location
bcl6ab NA coding downstream 28513 15580776 ~ 15587884 (-)
fam78ba LOC108248539,LOC106530399,LOC103357776,LOC101481240,LOC104920913,LOC105925252,LOC103479089 coding downstream 43257 15568830 ~ 15573140 (-)
imp3 imp3 coding downstream 62428 15549860 ~ 15553969 (-)
zgc:55943 clg18h1orf21,LOC104920916,LOC103358173,LOC102298056 coding downstream 69040 15537896 ~ 15547357 (-)
si:ch211-13f8.2 NA coding downstream 80594 15529158 ~ 15535803 (-)
pigk pigk coding upstream 303043 15923702 ~ 15954239 (-)
zzz3 zzz3 coding upstream 412623 16033282 ~ 16054068 (-)
usp33 usp33 coding upstream 433600 16054259 ~ 16077214 (-)
fubp1 fubp1 coding upstream 473349 16094008 ~ 16103715 (-)
slc25a24l LOC105932242,LOC107095427,LOC104957513,LOC102785394,LOC101478509 coding upstream 484113 16104772 ~ 16111436 (-)
G114883 NA non-coding downstream 208770 15407377 ~ 15407627 (-)
LOC120568803 NA non-coding downstream 223138 15387478 ~ 15393259 (-)
G114836 NA non-coding downstream 350173 15264520 ~ 15266224 (-)
G114752 NA non-coding downstream 534417 15076141 ~ 15081980 (-)
G114733 NA non-coding downstream 613352 15001144 ~ 15003045 (-)
G115017 rps8 non-coding upstream 100360 15721019 ~ 15727229 (-)
G115041 NA non-coding upstream 114395 15735054 ~ 15735281 (-)
G115042 NA non-coding upstream 114821 15735480 ~ 15735895 (-)
G115043 NA non-coding upstream 115870 15736529 ~ 15736827 (-)
G115048 NA non-coding upstream 121165 15741824 ~ 15745228 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other downstream 311787 15290082 ~ 15304610 (-)
G114680 NA other downstream 819353 14795918 ~ 14797044 (-)
LOC120568687 NA other downstream 998173 14613613 ~ 14618224 (-)
tfr1a NA other downstream 1647586 13949871 ~ 13968811 (-)
dis3l2 dis3l2 other downstream 2134172 13469531 ~ 13482225 (-)
G115164 btf3l4 other upstream 523501 16144160 ~ 16148121 (-)
cc2d1b cc2d1b other upstream 561995 16182654 ~ 16201698 (-)
mppe1 mppe1,LOC102781954 other upstream 696759 16317418 ~ 16327426 (-)
LOC120568735 LOC103355759,LOC101465864,LOC100696456,LOC102781658,LOC102293165 other upstream 710293 16330952 ~ 16335956 (-)
G115312 ralbp1,LOC102778314 other upstream 1016449 16637108 ~ 16639812 (-)

Expression


Co-expression Network