irf4a (LOC103368953,LOC104943383)


Basic Information

Item Value
gene id irf4a
gene name LOC103368953,LOC104943383
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22466809 ~ 22479964 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816279.1
CGCATCTCCTTTTGAAATTCTCAGAGCACGAGAGGCTCCTCCCGGTAAACACAAATCAAGATATGATAACATTTAAGAATAGGACACTGAGAGCTTCAAAACAGATTTCAGCGGGGAGAGCTCGCGTAATCAACGAGATGAACCTAGATGAGGACAGTGGCATGTCAGTCAGCTGTGGCAACGGCAAACTGAGGCAATGGCTGATTGATCAGATTGACAGCAGGGTATATCCTGGCCTGATTTgggaaaatgatgaaaaaagcaTCTTTAGGATTCCATGGAAACATGCAGGAAAACAAGACTATAACAGAGACGAGGATGCTGCGCTCTTCAAGGCATGGGCATTATTTAAGGGAAAATATAAGGAAGGAGTCGACAAGCCAGATCCCCCCACATGGAAAACAAGACTACGCTGTGCTCTTAATAAAAGCAATGACTTTGATGAGTTAGTGGAGAGAAGCCAGCTAGACATCTCAGACCCCTATAAAGTCTACAGAATCATTCCAGAAGCAGCCAAAAGAGGAATGAAAATGAGTGTAGAGGAGACACCATCACCTGTAAACGCCATTGGCTATATTCCTCCATATACGTCTATGCACAACCAGGTATCCGGCTATATGGTTTCTCAGGAGAGAAGGGACTGGAGGGATTACTCACCCCCAGAACAAcaacctcttcctcctccacatcACCATGGGCCACATGCAGAGCTGCAGTATGGTCAGTGCCACTACCCGTCCCCTTTCAGTCGTACTTGGCCGGGGTCACACACAGAAAATGGTTTTCAGCTCTCCTTCCACACCTACTTTTCAGAGTCCCAACCGTCCATGTATTCAATTGACCAAAACAATGCCATAACAGATTTCAGCCTGCATGTGTCCCTATACTACAGAGAGTCTTTGGTGAAGGAGGTTACCACCACCAGCCCAGAAGGTTGTCGGATCACCTCTCCTTCCTCATCCTCtccatcctcttcctcctcttcttccccaTGCCCAGAGGACAAGCTTCACAGCGGGGCAGAAATGATTCTTTTTCCATTCCCGTACCCTGAGTCTCAGAGGCAGGGTGCTGAGATGCTTCCTAATGTACTGGAGAAGGGGGTGCTTCTGTGGATGGCACCTGATGGGTTATACGCTAAGCGCCTCTGCCAGGGACGAGTGTACTGGGAAGGACCTCTGGCTCCATATATGGATAAACCCAACAAGCTGGAGAAGGAGCAGCCATGCAAACTGTTTGACACCCAGCAATTCCTTATTGAGCTTCAAGATTTTGCCCATAATGGCCGACATTTACCGAGACACCAGGTGGTGCTATGTTTTGGAGACGAGTACCCCGACCCCCAGCGCCCGAGGAAGATGATCACAGCACAGGTGGAGCCAGTGTTTGCCAGAAAACTGGTGTACTATTACCAGCAGAACAATGGCCACTACATGCGGGCCTTTGATCACATCCAGGAACAGAACACATCTCCAACAAACGACTATCCTTCCCAGAGATCTCTACAGCATATTCaggagtgacacacacacacacacacacatacacacgcacacacacacacacacacatgcaagagGGCATGAATGTGAAAGTAAACCGCTGACCGTTTCTCACCCCTTTCGACTGCATTGCTGTGTACTGTAAATGATAGAAGCTATCATGATACTGAGGGGTAGATATGGGGAAGACCCTGTTGTTTTCACTTGCACACCTATGCGTTGtagtctttctgtctgtgactGTAgagtaatgtatttttttctctcaagtATTATTGTGACAGTGTGAAGGATGCGGTTTGAGGGTGGGGGGGATGAGGAGAGCGGAGGGCGACTGAGACAGGAAGTACTAGCACAGGTGCACAGGAAGAATGGCCCCTAAGACAAACACTGATATGTCAAAGGGACAAAACAGAGTATGAATGAatatttattgcattttcacaggTAACAGTTGACGCTCACACACTGAAGTGGCACATTCACAAACTCTGCCTTTTAAACTCAGTTGACACAACTTCTTTTGTGATTCAAAACTTTTATTACATACAGGACTTTATTAatgtacacaataataaaatgtgCTTTGGTGAGCAAGTGAACAGTCAACAATATCAATGCTTGGTCCATTGTAGACCTCAATTCTGTTTTTTATCGCAAAAAAAGAGCAAGCTACAACTGAAGTTTGAGAGAAATCGATGTTATCACTGGTCTGGTGTAGTAGAGGAAGCCGTTATCACACAATTCTTATCTCTTGGctgctacatacagtatgttgcagGACGCACTTACAGAAATCTATTTCTACTGAATCTGGCCAGCTTTTAAAAATATCATATTCATTTAAATTACATCAAACTGAACAAACACCTAAAAGGGATCATAAGATAATCTAAGATGTCCCCAGATGATTACAGAGAtagtaaaaaacattttttatttgctgcATAATATCATGTCTATTCTATTTTTCTTGTAAAATAGTGTATAGTTTTACTTTTTCAGGTCTCTGAAACAATCAGATTTAAAAACTCAATTTTCGATTGAACGGGTAACAACTTATCGACATGAAATTTGTGACAAGTGTTTGCAAGTAGACATGGCTTTGTATTAAATTCTCACAAGCGAAAAAAGGTGGGGGACCACTAGCTTACAACACATTATCAGAGAGCAGATTGGGCATCAGGTTCTGTGGAAAGAGTGGGTGACCTTGACCTTTTGGACTGTTGACTGGAAAAATCACACTCATCCTGTAACTTGCAAGGACACCGGACCATTTCCTCTTCACCTGAAACTTTAGGCCTCACAAATGGGAAGAAAAACTACCTTTGTGGTCTGCGTGCAAGTTTAGCCAGGGAGGAGCTCTCTGGTTCCCATGCCAGAGATACCCTGAGTTCCCTGAGATACTGTTGAGGTTCACTCACTGGAAGTAACGTCCACACAAAAGCTATCATAAGATCCTAACAACCTAGTTAAGAATGTATCATACTTATCATCATACTTATCCAATAGTGAAAATAATGCAATTCCTCATGCTGTCGAAGTCCTAAAGGCTCATGCATCAAGTGATAAaggttttattatgtttttcttcTGTGGTCCAGAGTTTCGATCTCTGCATTTACTTCCTTCACACTTCAACCACATCACTTTCACAATGGCTTCAAAAGTCTGACCAAAATCACAGGCgggaatgttatttttttttttggtgcgtGTCTGAACCATAAATCATTGTTACTCTCAAACATATCAGCCAGTCTGATTCTGTGCTGTTGAACATTTTGAAATTTTGTTTTACATTACTTCACAGTCAGACATTTAACTCATCCAAATCAAATCTTAATAGTGAAAACATTACCAGCTCCATGTACAGTGTTCTGTTGTGgtaaacactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtaaagggccatgtgtgtgcatatgtgtaggTGGGTACGCATGTGTCACACAGTTGCACTATTACTGTTATCAGGAATTGACATTTATGGACTCATGATAAAACACCTACGTCAGTGACtcaaacacagacacgcacacccATTTCACATCACACTAtacagttacagtaaaacattcaGGAAATCACAAATTAAGTGCATACTAAAGAAAATAGTTCCAGCATTTTGTACAAAATATCAGAATAATGACAAGGAATAGAGATTATAAGGAGATTGATTAATATAAAATTGccacatgatttattttttaaataaacgtATCAATCTTTTACTACTCACGTCTGCTGTGCTGTTTTATCTTTGAGCTCTTTTTGATTTGCAAACAAAGGGAGGAAGAATGAGAGAGTCATAATTGGTaagaaaatgaagaagaaaaaaaaagactaaagaaaagcaaattcacacatttcacatggtgtttcccccctctgcAGGAAGCCACATCATTTGTAGTCAGGCTTCAGTTTTTCCGCCCTGTATGAGCCGTTACTCCAATTGACATGGCCCTGGCCCTTCAGTCGAAGCTTTGGAGCAAACAGTTTAGTCAATAACCCAAACAGGTTTTTACAGAGAAATGAAACTACCATAAGCATACCACATGCAACACTTTCTCCAACAGAAAGTTCCATTTTGACTCAGTGACTATGATTAATCTGTCTGGGCAGATAGTGACACATTATACAATAATATGCTGCGTTAATCTTTATGCGTAATGTTTCCACCTCAAAAAAGAAGCGACAAAATGTGTTACAAAAATCACTGTAACattgtaggcctatgtgttgTGTAAATATCTCTCATCTCATTATGTTATTACTTTTACTACCCTTCACACGTGAATCATATTATCTGTTGGGGGTTTCACTGCAATTACAGTGGCATTGATCACACTCACTGTAAAAGTTTATACTTTTGCACTGAGATTCTctgatgttattttttataGTGTTTCTGTTATTCCAATTTTGAGCTACATATTTAGAAAGCATTGCTGACTTGTTTATCTAtttttgtacagtatgtttcatACTACATCAAGGCTCTGACACAAGAAAGAAACGAGGGTATACCACAATAAAACCATAGTAATGTTTTGCTGACATCTGCTGGTTAGTTTAGCTGCAGCTAAACAAAAAGCTGTGAATTTGAGGGTCGGCAAGACGATTAACAAGACgaataatgtttatttctaaatacATGTATCTATGATTTCTTCTCATTAAATGTTCTTATTATAGTTTTTCTCAAAAAAATGATTGAATCTTTGATGAGGAGTTGTGATATGACTATGTATTGCTTTAAAGGACCGCAAGCCAAAACAATTGGGAACCACTGAGATAGAGTCCAGGGGGCCCTGCTAACTCCTCTCCACAGTTACTGTTTAAGTCAGACTTAAGGTATATGCCAGTACTCTACTTTCAAGCTCCAGGTAAAATACAGCTGAATGTTGGTGGTCATTGTAtaaaataattcaattaaactTTATTAATCCGACTAGCAgctacaaacaacacacacatacacagcacacaagcctacatataggcctacaccCTAGAGAGTAGTTATCCAATTTGAGAAATTGGGGGCATGAGGATACTTTATACCCATCTGTAGCTGTCATATGGTGTCTGGCATAAAAGGGAGTCCAGGGGTGTACAGAAAATATcttctccccctgctggtaagattcccttacattttaaaacccTATCCCTGAGAACATACCTTTGGTAATTCTACACTAAACTCAGAGTCCATGACCCCAGTTTGTTTAGTGTCAGACCTCTGCCCTGGATTTGATGACAGTCCTGTTTAACCCTAGTAAACTCTGGCTAATCCTGCTTGTTGACCCCTGTGGTTAGAAAGGTGTTGACctcattctcctttttttcactAATGTTGACCTCTGAATATGACACAGCAAATCATCACTTACAGGCCAGGCCCACTGCTAATGCTGTGTTTTAGGAAGAAGTAGCTGATGGGAACCAATACTGAGATACATTGTTGGCAGATGAACAGAGGACAATAAAACTGAACTGTTTAGGTGTGactgagtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaattactcTATTATACTCTTAATGTAAGTCattatcattttattattattattattattattattattattattattattaatgataataatacaacCTATATTATGAATTATCTGCATATGACCTACACAAGACATGAGAATGTCTCCACCATCACCAGTAAATAAAATCTTTATCACCACAATTAATCAGATTGAATTGTTTTCAGATGTCTGTTTATCTGAGGCTCTTCAGATAACAATGTACTTGACCCAATACTTTATGATGGCAGGAAAGCATTTGTTGGATAAGGAGCAGCAAAGTAATGGAAAACAATCAGATGACTCGGGACACGAGTGTAAACAGATTAGGGTTGATAAGCAGAACAATATGGTGGTCTACCTGGCACTCATGCAAGGGGATGGGCTGCTTGTTTAGTTTGGCTGGCAACTCGCAGAGATTTTGGATTTTAAGGATGTTACATTTATACGTCTTTAGACAAAGTAGGAAATGCTGGATTTTTCACCATAATCTAGATTTCCTCATGAGACACATAACAGAGATACAAAGTAAATAGTTACCAGCCAACTAAGAAAAAGGGACTGTCCATGTATATCCGTGCAGTAAAATAAATCACCAGCAGGGAGTGATGTATCATTAGTTGGTTGCTGCACTCtacatgcaaaaaaacaacaactgaaaaatacaaaaactgaagaaaaaaaaaac

Function

NR:

description
PREDICTED: interferon regulatory factor 4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09445 IRF4; interferon regulatory factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816279.1 True 6416 mRNA 0.41 9 22466809 22479964

Neighbor

gene id symbol gene type direction distance location
foxq1a LOC104941088 coding downstream 29075 22436460 ~ 22437734 (-)
LOC120567665 LOC104931526,LOC104941071,LOC103370819 coding downstream 31832 22431645 ~ 22434977 (-)
foxc1a LOC103370816,LOC104931527,LOC104941097,LOC102782320,LOC100700524,LOC102209299 coding downstream 40874 22423693 ~ 22425935 (-)
wrnip1 LOC104941238 coding downstream 219221 22238488 ~ 22247588 (-)
dhx30 dhx30 coding downstream 230299 22226179 ~ 22236510 (-)
dusp22b dusp22,LOC103368952,LOC104931523 coding upstream 624 22480588 ~ 22484971 (-)
opn7a LOC102784990 coding upstream 16108 22496072 ~ 22503579 (-)
phlpp1 LOC103368950,LOC101477421,LOC102207086 coding upstream 45297 22525261 ~ 22573807 (-)
LOC120567969 LOC103368948,LOC102290339,LOC102784041,LOC100706175,LOC101476947 coding upstream 96369 22576333 ~ 22622878 (-)
LOC120569075 LOC104929330,LOC103371151 coding upstream 209110 22689074 ~ 22694675 (-)
LOC120568857 NA non-coding downstream 260818 22181964 ~ 22205991 (-)
G116954 NA non-coding downstream 265829 22195324 ~ 22200980 (-)
G116922 NA non-coding downstream 288275 22178293 ~ 22178534 (-)
G116893 LOC104955993 non-coding downstream 463951 21997794 ~ 22002858 (-)
G116832 NA non-coding downstream 655663 21810862 ~ 21811146 (-)
G117052 NA non-coding upstream 149932 22629896 ~ 22632268 (-)
G117055 LOC104929332,LOC102785373,LOC100706434,LOC102205468,LOC106925933,LOC103142996 non-coding upstream 190769 22670733 ~ 22674450 (-)
G117112 LOC104949490,LOC101162245,LOC103371147,LOC108239677,LOC107092425 non-coding upstream 327108 22807072 ~ 22809753 (-)
G117117 NA non-coding upstream 345409 22825373 ~ 22825583 (-)
G117114 NA non-coding upstream 353102 22833066 ~ 22834881 (-)
G116969 NA other downstream 198250 22261998 ~ 22268559 (-)
higd1a higd1a other downstream 1456233 21008048 ~ 21010576 (-)
tmie tmie,LOC102776014 other downstream 1471242 20984801 ~ 20995567 (-)
xcr1b.1 NA other downstream 2671050 19793342 ~ 19795759 (-)
G116138 NA other downstream 3001429 19464700 ~ 19465380 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 865754 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 950402 23430366 ~ 23430992 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other upstream 988656 23468620 ~ 23491612 (-)
LOC120568990 LOC101487892,LOC104941256 other upstream 1371109 23851073 ~ 23856621 (-)
G117560 NA other upstream 2019416 24499380 ~ 24536496 (-)

Expression


Co-expression Network