tmbim1a (tmbim1)


Basic Information

Item Value
gene id tmbim1a
gene name tmbim1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13186254 ~ 13195957 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816319.1
CACCCTGCTCTTTACTGTTCCGGGAAATGTTCTTCCCTACTGCTGCTGCTCAACCTACAGGACAGACCAGAGAGAACAGACGGGCAGGCCGCCGAACAAATTCATATTAAACACAAACCTAACCGAAACTCTTCAGTACTTTGGAGTTTTTTGAAAACAGAGAGGACTTTCCGACACCGCAAAGACTTCTAGTTTTTCCATTTTACCGCTAAGAAATATTAGGTTACGACCAGACTGTTTCTTTCGTTGACATCTCATAGTTGGTAAAATGTCCAGGTCAGACTACCCTCCAGGGTACGATGACTCCCGGAACCTGCTATATGCACCTCAGGGTGGAAATTACCCACCACCCCCTGCGTATGGCTTCCCTGGCTTTGGTGGTCCCCAGCCAGGCCAGCCCTCTGCTCCCTACCCCGCTGGTCCAAACGCTCCTGTGTATCCAGGCCAGCCTGGGGGCTATCCTCAGGGTCAGCCAGGGGGCTATCCTCAGGGTCAGCCAGGGGGCTATCCTCCCGGCCCTTACCCAGGACAGCCTCACCCTGGTGGGCCTCCACGAGCTGGCTACCCCAGTCACCCTCCCATGCCGCCTGTCATGCCACCTACCATACCATCAGATATCCTGAGCTCGGGTGAGGAGTTTGCGGCAAGCGACAGCGGTTGGGACAGTCTGAGCATTCGTCATGCCTTTATCCGAAAGGTGTATTTGATTTTGGCGTCTCAGCTCCTTGTCACCACAGCCATTGTGGCCGTATTCACATTTGTCCAACCTGTCAGATCCTTCGTACAGAAAAACCAAGCTATCTACTGGGCATCATAtgCTGTGTATATTGTCACCCACCTTGTGCTGGTCTGCTGTAAGGGCCCCCGGAGAAAGTTCCCATGGAACGTCATTCTGCTGTTCCTCTTTaccCTGGCTTTGTCCTACATGACTGGATCCATTTCCAGTTACTATGATACAAAAGCAGTGTTTCTCGCTCTGGGGATCACTGCCGTCGTCTGCATCGCTGTCACCGTCTTCTGCTTCCAGACAAAGGTGGACTTCACCAAGTGCCAGGGCCTCTTCTGTGTCCTGGGAATTGTGATGTTGGTGACTGGCATTATTGCAACTATTGTGCTGTCATTCAAATATatTCTGTGGCTTCATATGCTTTATGCAGCGATGGGAGCCATAGTGTTCACTATGTTCCTAGCGTACCACACGCAGCTGCTGATAGGGAACAGGAAGTACTCCATCAGCCCAGAAGAGTACGTGTTTGCCGCGCTCTCCATCTACGTTGACATCATTCAGATTTTCCTTTTCCTGCTGCAAATTATCGGTGCCTCGACCAAATAAGTGCACACAAGGGTACACAAGCAACTTGGGTCAACAGAGTGCAGATTAACACCTCCAAAACCAttctgtgccttttttttttttttttttttttaaaccttttgctttgttttcagCCAGAAtcagaatacatttttaaaatcatgATGCACTCCGGTGAAAATGTCTTAGGCATGAATTTGAGATTTGGTCATAGGTTAATCCTATGACCAAAAAGATTTCTTTTCCCTGaaattaatatttgtgtgtttctgtattaaGCAACTTATCAGTGGTTTAAAAAGAATATTAATACTACAGTATAAATACAGCAAATACCTTTAGACACTGGATTTAAGTTGAGGCAGACAGCGTCTCAACCTTTCTTCTCTGCATGTACAAACTGTGGCCAATCTGTATATATGTTGAGAAAATGGGCAACcatgtttattttatgttcAACCTCCCAATTTGCCAACAAAGAGGCCCATCTCTCTGGTTGACTTTGAAGTACAGTAGGAGGGGTTGGCAATACCAGAAAATTGGTTTCCGATACCAAGTAACATCAGGGCCAGGATCGTTTTTAATACCGATACTGATAcgctttatctttatttatttgtgtatgaATCATTAATAGGCTACTTCTGAATAAATTTTTATTTACCAATAATTAGTTTTTCAAACATAAGGCATTATACGCTGTTTATAGTTCCACACTTTTCTGAGTTTGATGAAAGGATTGTCGGgttaaaaacaatttgcctACCAGCACTTCTAAAGCTAACCACTTATCTTATAAtacctcatttgtttaatccctaaaaaaaaaacagtgtataCTGGACCTTTTCTACTAGTAACTTCCTGAACTCATTTTTATAgtaaggtttttgtacagactAAACAAACAAGGTAGAAAGGGTTATTTAGCGAGCTTTAAACGTGCTGGTAGGTTTGTTACTTTTGGACAGACCAGGCTAACCGTTTcccatttttttgtctttatgctaaactaagctagcCTGTTGCCAGCTcgcttcatatttagcatacagacGTGAGCGTGATATCGATCACCTTTTAACTCTCAGCAAATGTATCAAGTGAATGAGCATAGTTCTCAAAATATTGGAACTTGTAATGATTTGCATGTCAGAAGGCAAAACAGGCTTTCATGGTAAATAGTAATTGAGATGTGAAGAGAAGTGTTTATGTGCAAAAAAACGTGATGTTACATGATGTAACCTTTGCATTAATCCTAATGATGCTAGTATGGCTGCTCAAAACTACACTTGGTATCTGCAGTATTGATACTTTAGTGATagataaaaagcaaaaacagcTCAGTACACCTAATGATAGCCACTGACCTGCTGTCATGGCTTCATATTGTAACTATATATCATAACTATATGCATTCTACATCCCTACAGTGCCTTCACAGGGTGAAGTTTCTGAGTTtagattttgtatttttttttttactttaagaaGTACAGGGTTATATTCCACCAGTGTTTTATAGTATTGATACATATGTCTGTTCATGTATTCTCGTCCAATCTGGGTCAGATACTGAGTGCCAGCAGGGTGGGTTTGTCCATACAGGATAACACAATCGGGGCCATGGTGTTAAATTATTGGAACATTCCTGAAAGTCATTGAGTTCAAACCAATGCGTGTCTAAAAGCTCCTAAATGATCAACCCCAACCAGCTGGTCCTCTGCACATGTTTATATTCAGTATAGACCCAAGTTACATACAACCCTTGACTCAAACAACTAAGGCAGACATTTTAATATGTGCAGCACAGATGATCAGTGTGGGGGTATGGTAGGGTGATGAGGAAAATGTGTTTGCCTTTTcatattaaataaacatttgtatTTCATA

Function

symbol description
tmbim1 Enables death receptor binding activity. Involved in negative regulation of Fas signaling pathway; negative regulation of extrinsic apoptotic signaling pathway via death domain receptors; and negative regulation of protein localization to plasma membrane. Located in Golgi apparatus; endosome membrane; and lysosomal membrane.

NR:

description
PREDICTED: protein lifeguard 3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24205 TMBIM, LFG; protein lifeguard

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816319.1 True 3208 mRNA 0.42 12 13186254 13195957

Neighbor

gene id symbol gene type direction distance location
LOC120568263 LOC104953400 coding downstream 27964 13152095 ~ 13158290 (-)
LOC120568264 LOC104953400 coding downstream 34776 13132932 ~ 13151478 (-)
cfap410 cunh21orf2,LOC102788189 coding downstream 70965 13112363 ~ 13115289 (-)
xirp1 LOC104959684 coding downstream 241536 12931398 ~ 12944718 (-)
LOC120568154 NA coding downstream 300807 12872858 ~ 12885447 (-)
casp8 NA coding upstream 782 13196739 ~ 13207620 (-)
LOC120568680 catip coding upstream 12073 13208030 ~ 13214290 (-)
LOC120568677 NA coding upstream 18923 13214880 ~ 13218070 (-)
LOC120567607 LOC104935780 coding upstream 28940 13224897 ~ 13230904 (-)
LOC120568781 NA coding upstream 36139 13232096 ~ 13236247 (-)
G114177 NA non-coding downstream 8503 13176803 ~ 13177751 (-)
G114129 col6a1,col6a2 non-coding downstream 18548 12953380 ~ 13167706 (-)
G114166 rpl37a,RPL37A non-coding downstream 68804 13114645 ~ 13117450 (-)
G114159 NA non-coding downstream 81857 13103242 ~ 13104397 (-)
G114130 col6a2,LOC105007837 non-coding downstream 91425 13091647 ~ 13094829 (-)
G114183 NA non-coding upstream 1788 13197745 ~ 13223865 (-)
G114196 lect1 non-coding upstream 84974 13280931 ~ 13286164 (-)
G114199 NA non-coding upstream 90694 13286651 ~ 13287220 (-)
G114202 NA non-coding upstream 92225 13288182 ~ 13288993 (-)
G114215 LOC103354350,LOC100704451,LOC101473770,LOC106904511,LOC103151571,LOC106963118 non-coding upstream 198504 13394461 ~ 13406830 (-)
G114152 NA other downstream 97691 13084561 ~ 13088563 (-)
LOC120568578 wdr48 other downstream 210926 12966466 ~ 12975328 (-)
LOC120568934 LOC104956577 other downstream 417629 12760748 ~ 12768625 (-)
nedd8l LOC104931181,LOC104949953,LOC107384241,LOC103360313 other downstream 577685 12601180 ~ 12608569 (-)
G113805 NA other downstream 967987 12218062 ~ 12218267 (-)
dis3l2 dis3l2 other upstream 273574 13469531 ~ 13482225 (-)
tfr1a NA other upstream 753914 13949871 ~ 13968811 (-)
LOC120568687 NA other upstream 1417656 14613613 ~ 14618224 (-)
G114680 NA other upstream 1599961 14795918 ~ 14797044 (-)
mfsd8l2 LOC102304717,LOC102799006,LOC108238243,LOC103479065 other upstream 2094125 15290082 ~ 15304610 (-)

Expression


Co-expression Network