ap1m1 (ap1m1,LOC107696211)


Basic Information

Item Value
gene id ap1m1
gene name ap1m1,LOC107696211
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18075107 ~ 18090043 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816329.1
ACGGATGGTGTGAGTGTGACAAAAAGGGAAGGGTGGCTTTCCTCTTTACAGTATTATGAATGAAAGtctgttcttttatttttagcCCTGAAGTAGTTAATATCAAACATTATCAATAAGCATCTGAAAAAGAGCTGAACTAAGCTCGTATAAATTAGTTCAAGATGTCTGCGAGTGCAGTGTATGTCTTGGATTTAAAAGGAAAGGTCCTGGTGTGCCGAAATTACCGGGGGGATGTGGACATGTCTGAGATTGAGCACTTCATGACCCTTCTGATGgacaaagaggaggaggggaccCTCTCTCCAATCCTGGCCCATGGAGGAGTCCGTTTTATGTGGATCAAACACAATAACCTCTACTTGGTCGCAACATCCAAGAAAAACGCTAGCGTCTCGCTGGTCTTCTCCTTCTTGTACAAAATTGTCCAGGTTTTTTCAGAGTATTTCAAAGAATTGGAGGAAGAGAGCATTAGAGATAACTTTGTCATCATATACGAGCTGATGGATGAGCTGATGGACTTCGGTTATCCTCAGACCACCGACAGCAAAATTCTGCAGGAATACATAACCCAGGAGGGACACAAGCTAGACACCGGCGCCCCGCGACCCCCCGCCACAGTCACCAATGCTGTCTCTTGGAGGTCAGAGGGCATCAAGTACAGGAAGAATGAGGTCTTCCTGGACGTCATTGAGTCAGTCAACCTCCTGGTTAGTGCCAATGGTAATGTTCTACGTAGTGAGATCGTTGGCTCCATTAAGATGCGTGTCTTCCTGTCTGGAATGCCCGAGTTGCGGCTGGGCCTCAACGACAAGGTTCTGTTTGAAAACACTGGAAGAGGAAAGAGTAAATCAGTAGAGCTGGAAGATGTGAAGTTTCACCAGTGTGTCCGTCTGTCTCGTTTTGAGAACGACCGCACCATCTCCTTCATTCCTCCTGATGGAGAGTTTGAGCTCATGTCCTACCGCCTCAACACTCACgtgAAGCCCTTGATCTGGATTGAATCTGTCATTGAGAAGCACTCCCACAGTCGAATCGAGTACATGATCAAGGCGAAGAGTCAGTTCAAAAGGCGTTCCACGGCCAACAACGTGGAGATCCACATTCCTGTGCCAACGGACGCTGACTCACCCAAATTCAAGACCACAGTGGGCAGTGTAAAGTGGGTGCCTGAGAACAGCGAGATCGTCTGGTCAATCAAGTCCTTCCCTGGTGGAAAGGAGTATTTGATGCGAGCCCACTTTGGTCTGCCGAGTGTAGAGGCGGAAGACAAGGAGGGGAAGCCACCAATTAGTGTCAAGTTTGAGATCCCATACTTCACCACCTCAGGCATCCAGGTGCGTTATCTGAAGATCATTGAGAAGAGTGGATATCAGGCCCTGCCGTGGGTGCGCTACATCACCCAAAATGGAGATTACCAACTCCGGACCCAGTAGGCAGCGCATCAGCCGGCAGTAGGCAGGTGGAAACCTGAGGGGGCGGAGTGGAGCTGCTAATGCGTTATCAATGGCAGGTGTCAGTCATAAGACCAGAAGActgtctttttgtttcttttattttttgaagTTATATTGATTTCTGATCAATGCAAATATTAGATGGAGCCTTCAGTTaggtaaagtttaaaaaaaaaatcctttactGCTGTGTGGCTACTAATGTGAATGAGGCCAAggaaagcaggagtaatgtttACATCTAGGACATATAGTGCAGAGATGTACACAATCTATCACAATGGGTCAAATGATTTAGAGGAGTATGTTACAATTCTCATTTAAAGTTACTGTAATCACATCCACACAGGTTAACAACTCTCCGGTCAGTCTGACtaggatattttttttatatgaagcTGCTTTGTTCTGCCACAATTCCTATTTGTTGATtatctgtatatatttgttaCATGTTAATGAACTTCAATCCAGTGTTATTTGTTCAATAATTGTACATTGAAAAGCAAagttatcttcttttttttttattattatcacctCCATGTGATGCCATTGATACATGCCAGAGCAATGCCCTCCTGCATGGCTGTTGTGCTGTTTGACTCCTCTGACATTCAGCTTTGCAGTAAACATGAAGTTTAATTTGCACCGTAAACAGAATACCAGTTAAAAATCCCTTTTTTCCACCCCGACACCTGTTTCCCTTTTCCCTGTCTGTAaccacacacattttaaatcatTAAATGTCTATTTAGAGAAAAGTGTT
>XM_039816330.1
ACGGATGGTGTGAGTGTGACAAAAAGGGAAGGGTGGCTTTCCTCTTTACAGTATTATGAATGAAAGtctgttcttttatttttagcCCTGAAGTAGTTAATATCAAACATTATCAATAAGCATCTGAAAAAGAGCTGAACTAAGCTCGTATAAATTAGTTCAAGATGTCTGCGAGTGCAGTGTATGTCTTGGATTTAAAAGGAAAGGTCCTGGTGTGCCGAAATTACCGGGGGGATGTGGACATGTCTGAGATTGAGCACTTCATGACCCTTCTGATGgacaaagaggaggaggggaccCTCTCTCCAATCCTGGCCCATGGAGGAGTCCGTTTTATGTGGATCAAACACAATAACCTCTACTTGGTCGCAACATCCAAGAAAAACGCTAGCGTCTCGCTGGTCTTCTCCTTCTTGTACAAAATTGTCCAGGTTTTTTCAGAGTATTTCAAAGAATTGGAGGAAGAGAGCATTAGAGATAACTTTGTCATCATATACGAGCTGATGGATGAGCTGATGGACTTCGGTTATCCTCAGACCACCGACAGCAAAATTCTGCAGGAATACATAACCCAGGAGGGACACAAGCTAGACACCGGCGCCCCGCGACCCCCCGCCACAGTCACCAATGCTGTCTCTTGGAGGTCAGAGGGCATCAAGTACAGGAAGAATGAGGTCTTCCTGGACGTCATTGAGTCAGTCAACCTCCTGGTTAGTGCCAATGGTAATGTTCTACGTAGTGAGATCGTTGGCTCCATTAAGATGCGTGTCTTCCTGTCTGGAATGCCCGAGTTGCGGCTGGGCCTCAACGACAAGGTTCTGTTTGAAAACACTGGAAGAAAGAGTAAATCAGTAGAGCTGGAAGATGTGAAGTTTCACCAGTGTGTCCGTCTGTCTCGTTTTGAGAACGACCGCACCATCTCCTTCATTCCTCCTGATGGAGAGTTTGAGCTCATGTCCTACCGCCTCAACACTCACgtgAAGCCCTTGATCTGGATTGAATCTGTCATTGAGAAGCACTCCCACAGTCGAATCGAGTACATGATCAAGGCGAAGAGTCAGTTCAAAAGGCGTTCCACGGCCAACAACGTGGAGATCCACATTCCTGTGCCAACGGACGCTGACTCACCCAAATTCAAGACCACAGTGGGCAGTGTAAAGTGGGTGCCTGAGAACAGCGAGATCGTCTGGTCAATCAAGTCCTTCCCTGGTGGAAAGGAGTATTTGATGCGAGCCCACTTTGGTCTGCCGAGTGTAGAGGCGGAAGACAAGGAGGGGAAGCCACCAATTAGTGTCAAGTTTGAGATCCCATACTTCACCACCTCAGGCATCCAGGTGCGTTATCTGAAGATCATTGAGAAGAGTGGATATCAGGCCCTGCCGTGGGTGCGCTACATCACCCAAAATGGAGATTACCAACTCCGGACCCAGTAGGCAGCGCATCAGCCGGCAGTAGGCAGGTGGAAACCTGAGGGGGCGGAGTGGAGCTGCTAATGCGTTATCAATGGCAGGTGTCAGTCATAAGACCAGAAGActgtctttttgtttcttttattttttgaagTTATATTGATTTCTGATCAATGCAAATATTAGATGGAGCCTTCAGTTaggtaaagtttaaaaaaaaaatcctttactGCTGTGTGGCTACTAATGTGAATGAGGCCAAggaaagcaggagtaatgtttACATCTAGGACATATAGTGCAGAGATGTACACAATCTATCACAATGGGTCAAATGATTTAGAGGAGTATGTTACAATTCTCATTTAAAGTTACTGTAATCACATCCACACAGGTTAACAACTCTCCGGTCAGTCTGACtaggatattttttttatatgaagcTGCTTTGTTCTGCCACAATTCCTATTTGTTGATtatctgtatatatttgttaCATGTTAATGAACTTCAATCCAGTGTTATTTGTTCAATAATTGTACATTGAAAAGCAAagttatcttcttttttttttattattatcacctCCATGTGATGCCATTGATACATGCCAGAGCAATGCCCTCCTGCATGGCTGTTGTGCTGTTTGACTCCTCTGACATTCAGCTTTGCAGTAAACATGAAGTTTAATTTGCACCGTAAACAGAATACCAGTTAAAAATCCCTTTTTTCCACCCCGACACCTGTTTCCCTTTTCCCTGTCTGTAaccacacacattttaaatcatTAAATGTCTATTTAGAGAAAAGTGTT

Function

symbol description
ap1m1 Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development and digestive tract development. Predicted to be located in Golgi apparatus and clathrin-coated vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in several structures, including central nervous system; digestive system; eye; gonad; and heart. Orthologous to human AP1M1 (adaptor related protein complex 1 subunit mu 1).

NR:

description
PREDICTED: AP-1 complex subunit mu-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12393 AP1M; AP-1 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816329.1 True 2226 mRNA 0.44 12 18075107 18090043
XM_039816330.1 False 2223 mRNA 0.44 12 18075107 18090043

Neighbor

gene id symbol gene type direction distance location
cib3 cib3,LOC107687907 coding upstream 22678 18048066 ~ 18052429 (+)
LOC120567609 LOC103353062,LOC104950308 coding upstream 29879 18043397 ~ 18045228 (+)
im:7138239 LOC104950317,LOC103353072 coding upstream 33378 18035952 ~ 18041729 (+)
LOC120569107 nrtn,LOC103353066 coding upstream 89567 17975976 ~ 17985540 (+)
larp6b NA coding upstream 101551 17972055 ~ 17973556 (+)
LOC120568288 klf2,LOC104966780 coding downstream 57855 18147898 ~ 18149844 (+)
LOC120568290 dnah8 coding downstream 85940 18175983 ~ 18231000 (+)
LOC120568291 NA coding downstream 168087 18258130 ~ 18264859 (+)
LOC120568293 LOC103353052,LOC101477959 coding downstream 175874 18265917 ~ 18277003 (+)
LOC120568295 nmrk2,LOC106914787,LOC103146068,LOC102216674,LOC106516864,LOC103479788,LOC107094235,LOC102787357 coding downstream 189059 18279102 ~ 18281820 (+)
G115636 tpm4,LOC107383605,LOC103146061,LOC102218802,LOC103479776 non-coding upstream 9869 18060709 ~ 18065238 (+)
G115633 LOC102219409,LOC104931433,LOC103479775,LOC104950312,LOC105022474 non-coding upstream 16864 18052868 ~ 18058243 (+)
G115600 NA non-coding upstream 54997 18019905 ~ 18020110 (+)
G115599 ranbp3,LOC102787870 non-coding upstream 55493 18016563 ~ 18019614 (+)
G115585 NA non-coding upstream 107065 17967740 ~ 17968042 (+)
G115660 LOC102296215,LOC102788438,LOC100704618 non-coding downstream 81636 18171679 ~ 18174071 (+)
LOC120568296 NA non-coding downstream 142574 18232617 ~ 18233706 (+)
G115690 NA non-coding downstream 143700 18233743 ~ 18234058 (+)
G115705 NA non-coding downstream 172353 18262396 ~ 18262661 (+)
G115723 NA non-coding downstream 206103 18296146 ~ 18297509 (+)
LOC120567767 NA other upstream 45212 18027280 ~ 18029895 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 591554 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 1462901 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 1547425 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 1846556 16226307 ~ 16228551 (+)
G115729 NA other downstream 215106 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 476590 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 570386 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 630322 18720365 ~ 18725447 (+)
LOC120568770 NA other downstream 926996 19017039 ~ 19052242 (+)

Expression


Co-expression Network