LOC120568681 (LOC102798692,LOC102306166,LOC101470701,LOC102196346)


Basic Information

Item Value
gene id LOC120568681
gene name LOC102798692,LOC102306166,LOC101470701,LOC102196346
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 1120371 ~ 1136551 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816341.1
TCACAGTGCACGCGCTCAGAGAGCTGCACCGTCTCGAGCCGTTTCTGCTCTTCAGACCAACCGTCGCCGctagctgctagcttctGCTAAAGTAAGCTAACCGTCACTTGGAACTACAAACTCAGTTCAGTCCGTCAGTGTTCATATGAGCAGCAGTGATGAGCAGCAGAAGCCACAGGTCCTGTACGAAGAGCTCCAGCTGTTTGGGACATAAAGGACGATATTCCAGAGTGACCTTTCAGAAGTCTGGATGGGCAAAAGACGAGGATGAGAAGCTACACAGACTGGTGAAGGAGTTTGGATCCAGTAGCTGGTCTTCAGTTTCTCTGCACTTTAAAggtcagaggtcagatgGAGAGTGCCAGCGGCGGTGGCAGCACATCAAGAACCCAGAGCTGGTCAAAGGTCCCTGGACTCAGGATGAGGATGAAAGGGTCTTGGTGCTGGTTCAGAAGTACGGCGTGAAGCGCTGGTCGCTCATCGCCAAGCACCTCCACAGCCGCAACGGGAAGCAGTGCCGCGAGCGCTGGCACAACCACCTGAACCCCGCGGTGAAGAAGAGCGGCTGGACGCTGGAGGAGGACGCCATCATCTGTCAGGCCCACAGGCTGCTGGGAAACCGCTGGGCCGACATCTCCAAGCTGATGCCCGGCAGGACAGACAACTCGATCAAGAACCACTGGAACTCCACCCTGAAGAGGAAGGTGGAGAAGGAGGGATACCTGCAGGTCCTACACCACTACAACTCCTCCAGCACCTCCTCCaactcctcctccagctcctcttcTTCCAGCAGACAAACACCCAGGCCCTGCAGCAGCGCCAACATCCCCACTAAG
>XM_039816342.1
TCACAGTGCACGCGCTCAGAGAGCTGCACCGTCTCGAGCCGTTTCTGCTCTTCAGACCAACCGTCGCCGctagctgctagcttctGCTAAAGTAAGCTAACCGTCACTTGGAACTACAAACTCAGCAGTTCAGTCCGTCAGTGTTCATATGAGCAGCAGTGATGAGCAGCAGAAGCCACAGGTCCTGTACGAAGAGCTCCAGCTGTTTGGGACATAAAGGACGATATTCCAGAGTGACCTTTCAGAAGTCTGGATGGGCAAAAGACGAGGATGAGAAGCTACACAGACTGGTGAAGGAGTTTGGATCCAGTAGCTGGTCTTCAGTTTCTCTGCACTTTAAAggtcagaggtcagatgGAGAGTGCCAGCGGCGGTGGCAGCACATCAAGAACCCAGAGCTGGTCAAAGGTCCCTGGACTCAGGATGAGGATGAAAGGGTCTTGGTGCTGGTTCAGAAGTACGGCGTGAAGCGCTGGTCGCTCATCGCCAAGCACCTCCACAGCCGCAACGGGAAGCAGTGCCGCGAGCGCTGGCACAACCACCTGAACCCCGCGGTGAAGAAGAGCGGCTGGACGCTGGAGGAGGACGCCATCATCTGTCAGGCCCACAGGCTGCTGGGAAACCGCTGGGCCGACATCTCCAAGCTGATGCCCGGCAGGACAGACAACTCGATCAAGAACCACTGGAACTCCACCCTGAAGAGGAAGGTGGAGAAGGAGGGATACCTGCAGGTCCTACACCACTACAACTCCTCCAGCACCTCCTCCaactcctcctccagctcctcttcTTCCAGCAGACAAACACCCAGGCCCTGCAGCAGCGCCAACATCCCCACTAAG
>XM_039816343.1
TCCGATCATCACAGTGCACGCGCTCAGAGAGCTGCACCGTCTCGAGCCGTTTCTGCTCTTCAGACCAACCGTCGCCGCAGTTCAGTCCGTCAGTGTTCATATGAGCAGCAGTGATGAGCAGCAGAAGCCACAGGTCCTGTACGAAGAGCTCCAGCTGTTTGGGACATAAAGGACGATATTCCAGAGTGACCTTTCAGAAGTCTGGATGGGCAAAAGACGAGGATGAGAAGCTACACAGACTGGTGAAGGAGTTTGGATCCAGTAGCTGGTCTTCAGTTTCTCTGCACTTTAAAggtcagaggtcagatgGAGAGTGCCAGCGGCGGTGGCAGCACATCAAGAACCCAGAGCTGGTCAAAGGTCCCTGGACTCAGGATGAGGATGAAAGGGTCTTGGTGCTGGTTCAGAAGTACGGCGTGAAGCGCTGGTCGCTCATCGCCAAGCACCTCCACAGCCGCAACGGGAAGCAGTGCCGCGAGCGCTGGCACAACCACCTGAACCCCGCGGTGAAGAAGAGCGGCTGGACGCTGGAGGAGGACGCCATCATCTGTCAGGCCCACAGGCTGCTGGGAAACCGCTGGGCCGACATCTCCAAGCTGATGCCCGGCAGGACAGACAACTCGATCAAGAACCACTGGAACTCCACCCTGAAGAGGAAGGTGGAGAAGGAGGGATACCTGCAGGTCCTACACCACTACAACTCCTCCAGCACCTCCTCCaactcctcctccagctcctcttcTTCCAGCAGACAAACACCCAGGCCCTGCAGCAGCGCCAACATCCCCACTAAG
>XM_039816344.1
TCACAGTGCACGCGCTCAGAGAGCTGCACCGTCTCGAGCCGTTTCTGCTCTTCAGACCAACCGTCGCCGctagctgctagcttctGCTAAAGTAAGCTAACCGTCACTTGGAACTACAAACTATTGAACCTGAACAGTGTGTATCTTCCAGCAGCAGTTCAGTCCGTCAGTGTTCATATGAGCAGCAGTGATGAGCAGCAGAAGCCACAGGTCCTGTACGAAGAGCTCCAGCTGTTTGGGACATAAAGGACGATATTCCAGAGTGACCTTTCAGAAGTCTGGATGGGCAAAAGACGAGGATGAGAAGCTACACAGACTGGTGAAGGAGTTTGGATCCAGTAGCTGGTCTTCAGTTTCTCTGCACTTTAAAggtcagaggtcagatgGAGAGTGCCAGCGGCGGTGGCAGCACATCAAGAACCCAGAGCTGGTCAAAGGTCCCTGGACTCAGGATGAGGATGAAAGGGTCTTGGTGCTGGTTCAGAAGTACGGCGTGAAGCGCTGGTCGCTCATCGCCAAGCACCTCCACAGCCGCAACGGGAAGCAGTGCCGCGAGCGCTGGCACAACCACCTGAACCCCGCGGTGAAGAAGAGCGGCTGGACGCTGGAGGAGGACGCCATCATCTGTCAGGCCCACAGGCTGCTGGGAAACCGCTGGGCCGACATCTCCAAGCTGATGCCCGGCAGGACAGACAACTCGATCAAGAACCACTGGAACTCCACCCTGAAGAGGAAGGTGGAGAAGGAGGGATACCTGCAGGTCCTACACCACTACAACTCCTCCAGCACCTCCTCCaactcctcctccagctcctcttcTTCCAGCAGACAAACACCCAGGCCCTGCAGCAGCGCCAACATCCCCACTAAG
>XM_039816345.1
GCTCTTCAGACCAACCGTCGCCGATTGAACCTGAACAGTGTGTATCTTCCAGCAGCAGTTCAGTCCGTCAGTGTTCATATGAGCAGCAGTGATGAGCAGCAGAAGCCACAGGTCCTGTACGAAGAGCTCCAGCTGTTTGGGACATAAAGGACGATATTCCAGAGTGACCTTTCAGAAGTCTGGATGGGCAAAAGACGAGGATGAGAAGCTACACAGACTGGTGAAGGAGTTTGGATCCAGTAGCTGGTCTTCAGTTTCTCTGCACTTTAAAggtcagaggtcagatgGAGAGTGCCAGCGGCGGTGGCAGCACATCAAGAACCCAGAGCTGGTCAAAGGTCCCTGGACTCAGGATGAGGATGAAAGGGTCTTGGTGCTGGTTCAGAAGTACGGCGTGAAGCGCTGGTCGCTCATCGCCAAGCACCTCCACAGCCGCAACGGGAAGCAGTGCCGCGAGCGCTGGCACAACCACCTGAACCCCGCGGTGAAGAAGAGCGGCTGGACGCTGGAGGAGGACGCCATCATCTGTCAGGCCCACAGGCTGCTGGGAAACCGCTGGGCCGACATCTCCAAGCTGATGCCCGGCAGGACAGACAACTCGATCAAGAACCACTGGAACTCCACCCTGAAGAGGAAGGTGGAGAAGGAGGGATACCTGCAGGTCCTACACCACTACAACTCCTCCAGCACCTCCTCCaactcctcctccagctcctcttcTTCCAGCAGACAAACACCCAGGCCCTGCAGCAGCGCCAACATCCCCACTAAG
>XM_039816346.1
TTCAGACCAACCGTCGCCGCAGCAGTTCAGTCCGTCAGTGTTCATATGAGCAGCAGTGATGAGCAGCAGAAGCCACAGGTCCTGTACGAAGAGCTCCAGCTGTTTGGGACATAAAGGACGATATTCCAGAGTGACCTTTCAGAAGTCTGGATGGGCAAAAGACGAGGATGAGAAGCTACACAGACTGGTGAAGGAGTTTGGATCCAGTAGCTGGTCTTCAGTTTCTCTGCACTTTAAAggtcagaggtcagatgGAGAGTGCCAGCGGCGGTGGCAGCACATCAAGAACCCAGAGCTGGTCAAAGGTCCCTGGACTCAGGATGAGGATGAAAGGGTCTTGGTGCTGGTTCAGAAGTACGGCGTGAAGCGCTGGTCGCTCATCGCCAAGCACCTCCACAGCCGCAACGGGAAGCAGTGCCGCGAGCGCTGGCACAACCACCTGAACCCCGCGGTGAAGAAGAGCGGCTGGACGCTGGAGGAGGACGCCATCATCTGTCAGGCCCACAGGCTGCTGGGAAACCGCTGGGCCGACATCTCCAAGCTGATGCCCGGCAGGACAGACAACTCGATCAAGAACCACTGGAACTCCACCCTGAAGAGGAAGGTGGAGAAGGAGGGATACCTGCAGGTCCTACACCACTACAACTCCTCCAGCACCTCCTCCaactcctcctccagctcctcttcTTCCAGCAGACAAACACCCAGGCCCTGCAGCAGCGCCAACATCCCCACTAAG

Function

NR:

description
PREDICTED: myb-related protein B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816341.1 False 839 mRNA 0.56 8 1120371 1136543
XM_039816342.1 False 842 mRNA 0.56 8 1120371 1136543
XM_039816343.1 False 794 mRNA 0.57 7 1120371 1136551
XM_039816344.1 True 871 mRNA 0.56 8 1120371 1136543
XM_039816345.1 False 772 mRNA 0.56 7 1120371 1136497
XM_039816346.1 False 739 mRNA 0.57 7 1120371 1136493

Neighbor

gene id symbol gene type direction distance location
LOC120567934 NA coding downstream 66711 1050897 ~ 1053660 (-)
LOC120567797 NA coding downstream 219175 895507 ~ 901196 (-)
ccr9a NA coding downstream 271726 843808 ~ 848645 (-)
bfsp2 bfsp2 coding downstream 280605 823052 ~ 839766 (-)
LOC120568738 LOC106676760 coding downstream 442637 676331 ~ 677734 (-)
sft2d3 sft2d3 coding upstream 67437 1203988 ~ 1205541 (-)
LOC120568025 LOC103365692,LOC101173737 coding upstream 278605 1415156 ~ 1428314 (-)
LOC120567872 NA coding upstream 296684 1433235 ~ 1435275 (-)
LOC120568497 NA coding upstream 620070 1756621 ~ 1764145 (-)
lamc1 lamc1,LOC103398751 coding upstream 1382300 2518851 ~ 2601477 (-)
G111135 NA non-coding downstream 4411 1006083 ~ 1115960 (-)
G111172 NA non-coding downstream 25480 1093446 ~ 1094891 (-)
G111137 NA non-coding downstream 134308 927923 ~ 986063 (-)
G111147 NA non-coding downstream 139911 980124 ~ 980460 (-)
G111128 NA non-coding downstream 222660 850061 ~ 897711 (-)
G111176 NA non-coding upstream 4491 1141042 ~ 1201437 (-)
G111177 NA non-coding upstream 15583 1152134 ~ 1154135 (-)
G111157 NA non-coding upstream 34801 1171352 ~ 1198767 (-)
G111193 NA non-coding upstream 55881 1192432 ~ 1194635 (-)
G111194 NA non-coding upstream 62412 1198963 ~ 1199423 (-)
LOC120568485 NA other downstream 6189 1100064 ~ 1114182 (-)
G111133 NA other downstream 19701 1008233 ~ 1100670 (-)
G111134 NA other downstream 110271 1008894 ~ 1010100 (-)
G111136 NA other downstream 114446 1005071 ~ 1005925 (-)
G110988 NA other downstream 270879 849182 ~ 849492 (-)
mfn1a LOC102798404,LOC103374728,LOC101171942 other upstream 160282 1296833 ~ 1314845 (-)
dhx9 dhx9 other upstream 216471 1353022 ~ 1390538 (-)
LOC120568022 NA other upstream 255257 1391808 ~ 1409528 (-)
G111226 NA other upstream 276405 1412956 ~ 1417959 (-)
LOC120567890 NA other upstream 606749 1743300 ~ 1743839 (-)

Expression


Co-expression Network