cib3 (cib3,LOC107687907)


Basic Information

Item Value
gene id cib3
gene name cib3,LOC107687907
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18048066 ~ 18052429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816362.1
ATGGGGAATAAACAGACCATCTTTACAGCACAGCAGCTAGACGCCTATCAGGACTGTACATATTTTACAAGAAAAGAAATTCTCAGACTGTTTGACCGCTATCGGGATTTGGCACCGCAACTCGTTCCCCTTGACTACACCAGCAACCCAGATGTGAAGTTACCGTATGAGCTGATTGGCAGCATGCCAGAGCTAAAGGACAACCCATTTCGTCAGAGGATCGCTGAGGTTTTCTCTGAGGACGGAGAGGGAAATATGACACTGGACGACTTCTTGGACATGTTTTCAGTCCTGAGTGAGATGGCTCCGCGTGACCTCAAGGCCTACTATGCTTTCAAAATTTATGATTTCAACAACGACGACTTTATCTGCAAGTCAGACCTTGAGAAGACACTGAACAAACTGACCCGTAACGAGCTGACAGAAGACGAGGTAAGGATGGTGTGTGAGAAGGTGATAGATGAGGCTGACTTGGACAACGATGGACGCCTGTCACTGGAGGACTTCCAGCACATGATTGTTCGAGCTCCAGACTTCCTCAGCACCTTCCACATAAGGATATAAAGAAATGAAGCAATCATGTGCATTTCTTAATTTGAGTATCACATAAAGTGGACTTACAATACTGCAGAATGCCTGGAAAGTTGGGGGATCCAGAAAGCAACTATCATTTTGTGAATAACtttaatgtgaataattttgTAAAAAGAAACACGATCTTCATCAGAGATAATCAGACTTTGCCATTTAGCAACCAGAGGAAATACTATGAGTAACTATGAATTGTCTTGTCTTTAATGGTACCATTACTGCAAATAGATTGGAATTGTACGAA
>XM_039816363.1
ATGGGGAATAAACAGACCATCTTTACAGCACAGCAGCTAGACGCCTATCAGGACAACCCATTTCGTCAGAGGATCGCTGAGGTTTTCTCTGAGGACGGAGAGGGAAATATGACACTGGACGACTTCTTGGACATGTTTTCAGTCCTGAGTGAGATGGCTCCGCGTGACCTCAAGGCCTACTATGCTTTCAAAATTTATGATTTCAACAACGACGACTTTATCTGCAAGTCAGACCTTGAGAAGACACTGAACAAACTGACCCGTAACGAGCTGACAGAAGACGAGGTAAGGATGGTGTGTGAGAAGGTGATAGATGAGGCTGACTTGGACAACGATGGACGCCTGTCACTGGAGGACTTCCAGCACATGATTGTTCGAGCTCCAGACTTCCTCAGCACCTTCCACATAAGGATATAAAGAAATGAAGCAATCATGTGCATTTCTTAATTTGAGTATCACATAAAGTGGACTTACAATACTGCAGAATGCCTGGAAAGTTGGGGGATCCAGAAAGCAACTATCATTTTGTGAATAACtttaatgtgaataattttgTAAAAAGAAACACGATCTTCATCAGAGATAATCAGACTTTGCCATTTAGCAACCAGAGGAAATACTATGAGTAACTATGAATTGTCTTGTCTTTAATGGTACCATTACTGCAAATAGATTGGAATTGTACGAA

Function

symbol description
cib3 Predicted to enable calcium ion binding activity. Orthologous to human CIB3 (calcium and integrin binding family member 3).

NR:

description
calcium and integrin-binding family member 3 isoform X2

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23838 CIB3; calcium and integrin-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816362.1 True 835 mRNA 0.43 6 18048066 18052429
XM_039816363.1 False 688 mRNA 0.42 4 18048066 18052429

Neighbor

gene id symbol gene type direction distance location
LOC120567609 LOC103353062,LOC104950308 coding upstream 2838 18043397 ~ 18045228 (+)
im:7138239 LOC104950317,LOC103353072 coding upstream 6337 18035952 ~ 18041729 (+)
LOC120569107 nrtn,LOC103353066 coding upstream 62526 17975976 ~ 17985540 (+)
larp6b NA coding upstream 74510 17972055 ~ 17973556 (+)
LOC120567749 LOC103353067 coding upstream 80373 17787785 ~ 17967693 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 22678 18075107 ~ 18090043 (+)
LOC120568288 klf2,LOC104966780 coding downstream 95469 18147898 ~ 18149844 (+)
LOC120568290 dnah8 coding downstream 123554 18175983 ~ 18231000 (+)
LOC120568291 NA coding downstream 205701 18258130 ~ 18264859 (+)
LOC120568293 LOC103353052,LOC101477959 coding downstream 213488 18265917 ~ 18277003 (+)
G115600 NA non-coding upstream 27956 18019905 ~ 18020110 (+)
G115599 ranbp3,LOC102787870 non-coding upstream 28452 18016563 ~ 18019614 (+)
G115585 NA non-coding upstream 80024 17967740 ~ 17968042 (+)
G115516 NA non-coding upstream 468477 17578910 ~ 17579589 (+)
G115513 LOC103353967,LOC104931261,LOC102192286,LOC100692446,LOC101469749 non-coding upstream 482584 17565255 ~ 17565482 (+)
G115633 LOC102219409,LOC104931433,LOC103479775,LOC104950312,LOC105022474 non-coding downstream 439 18052868 ~ 18058243 (+)
G115636 tpm4,LOC107383605,LOC103146061,LOC102218802,LOC103479776 non-coding downstream 8280 18060709 ~ 18065238 (+)
G115660 LOC102296215,LOC102788438,LOC100704618 non-coding downstream 119250 18171679 ~ 18174071 (+)
LOC120568296 NA non-coding downstream 180188 18232617 ~ 18233706 (+)
G115690 NA non-coding downstream 181314 18233743 ~ 18234058 (+)
LOC120567767 NA other upstream 18171 18027280 ~ 18029895 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 564513 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 1435860 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 1520384 16439025 ~ 16527682 (+)
LOC120568164 LOC104950913,LOC104937610,LOC103355754 other upstream 1819515 16226307 ~ 16228551 (+)
G115729 NA other downstream 252720 18305149 ~ 18354344 (+)
skila skil,LOC102782637 other downstream 514204 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 608000 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 667936 18720365 ~ 18725447 (+)
LOC120568770 NA other downstream 964610 19017039 ~ 19052242 (+)

Expression


Co-expression Network