atp6v0b (atp6v0b,vato,LOC102788333)



Basic Information


Item Value
gene id atp6v0b
gene name atp6v0b,vato,LOC102788333
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 20208710 ~ 20218795 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence


>XM_039816379.1
TCCCTGGTCACATGCTAGTCAAGCTGGATCAGCTGACATCACCCAGGTTCTCCTTTTGATGCTCTGTCTCCACCATCGACTGATAGCGCGTCTTAAAACACAAGTATTTCGTTATCTTGGCATTACTGGCGTCAAATTTTAGATTTGAGCCGAGGATTTCTCGCTGATCCAGCAGGTTAGACCGCCAGATACATGctgctagagtggatgatgaACGGACACGCTATTTTGTATACGGGGGTCACTTTGGCCTTCTGGAGCACCATACTAATCGTCGGTCTCTGCTATACCATATTTGACCTTGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACTTCTCCTTTCATGTGGGCCAATCTGGGCATTGGCTTGgccatctctctgtctgtggtaGGAGCAGCCTGgGGGATTTACATCACTGGCTCAAGCATCATTGGTGGTGGTGTCAAGGCTCCACGAATCAAAACCAAGAACTTGGTCAGCATCATCTTCTGTGAAGCTGTAGCAATCTATGGGATCATTATGGCTATTGTAATCAGCAACATGGCGGAGAGCTTCAGCGGAACAACCCCTGAGACCATCGGGGCAAGGAACTACCAAGCTGGTTACTCCATGTTCGGAGCCGGTCTGACTGTGGGTTTCTCCAACCTCTTCTGTGGCATCTGTGTCGGCATCGTGGGCAGCGGAGCAGCATTGGCAGACGCCCAGAACGCCAGCCTCTTCGTGAAGATCCTCATTGTGGAAATCTTTGGCAGTGCAATTGGCCTGTTTGGTGTCATTGTAGCCATTCTGCAGACATCAAAAGTGAAGATGGGAGACTAGAAGATGCATTCACATGCTGACAAGATAAAAAGACACTGCTGGAAAATAAGATGGATTATTGTGTAAATACATcgtaaattatttaaatgtctcTATATGCCTGGTATTGTTTTCAACCATCATTTATGCAAGAGTGGTACGTGCACACCCGACTGTCTTGTCTTGAGTGAAACATGAATGTTGCATAAGAAAAGTGGAAGAAAAATCACCAGTTGCCAGTGTGCAATTCTTGATACAAGTGAACCCTGCATCTCTCCTACAGTTCAGCTTATGGAGTAGTACAAGCAGAATGTACAAGAATAGTAGGATTTTAGATCAGCCAGTCTGTAGCCCTGAGAGCTGCCAAGACGTCTTGCAGCTTTATTTCATGGATTGAATTGGTCCTTAAACTTACTGATCGGTTCGTAAAGTACATTTTTTCTGAGCACTCTTGGATGAATGATGAGTTAAAAATGACACCAGAGTATTCGAAaatgtttgtgggtgtgtgcgtgtgtgtgtgtgtgtgtgtatgtgtatgctgGACACatgagttttcttttttcctgtgACGCATGAGGGTGTTTACCATTGTGTTCATTACTGTAGCCTGgacagtcagtttttttttttttttttttttttactcttatttgctaataataagCAAGTGGCtcaaatacagtatttgttAGGCCTCCTATTGCAGAAGTGACAGAGAATCTGTGAAGTTTTGGATTGGAGTACTGATCATGAGTCATTAGTGTAAAGTCACAGGAGAGTTGGACGTGCTCTTTGGGAGGCCAAATAGAGTCGGATCACAAGCAGCAGATGCTCTAAATATGTCATCCTGTCATTCAGTTCCCTAAAACGGTACCAAATGAGCCTCCTGAACATAGCTGCCAGCCATAACTTTCTTGTTTACCCCGGAGTCTCCtctatttttttgttcttttctttttcttttttttttttaacaaggttCCTTTTCAGTAGTTTTTACAAAGATGAATTGGACATGAAAGGGGATTGTTCAGTGTTTACCAGAGGGAGACCAAAAGATGTGGATACCCAGAATACCTTTCTTTGCAGATGCCCAAGTTAAATATCCTGTTTCTCAGATCCCTAATAAACCTTATATTGGACAAGAAAGAGGACTTTATTTTAGAGAGCACTTCAGTTACTAGTATTACCTTACACTCAATAGTAACTGGTAATATCTGCTGTAGTATCACCATCATTGGACTTGAGGTCTTTAGGGAAAATAATTTTGTACACACTGGTTCTGACTTTGATTTGATATAATCTCAGGTCGTCTGGCACCCAAAACTATGGACTCATCACATAAACAACTTTATGAATACAGATTTTTAAATTTGCTTATTTTACACACTTCACattgctttattttttattaaactgtCTTGTCTTGAATGTATGTCTTAACATGTTAGCTGTTTGAGTCTCTGTTCCAATTTATTTTCTAACATTCCTTAAAGAAgcttaatgtgtgtgtaaaactaAGTCTTGTTTGTGGATAGAGTGCAATTTGAATGACAAAATTAGACTCCTGCTATATCACAACAAGGCCATCTTTGACTGTCTAGTTTCCTATTGATGCTGACTCGTACCATGGCTACTTGTGAATCGTCTCAAatctttccttttatttcccCCCTCCAACCCTTTTGTGAAGTTCTGAATTAATATAAACATTGAATCTTAGCACGGGGAAACTGGATTGTCTTTAATATATGTGGACCTGGCCTCCCAAAGGTGTCAAAGCAGCAAAATCATCTTTTGTCCTTATTATGGTTTTATAATTAAGCCAAGCTGTATCTCCAGTACTCCTTTGGTAAACCAGGCCCTGTACCAAACCCCAGGCCTCAGTCAGTGTAGTTGCTACCGTGTGTGCATTATGTTGATGTGATggtgaacagaaaaaaaaaaaacgtcattgATTTTGACATTGTGTAtgataataacaaaaaacagaTCTGGCTTCATAAATGTCCTTGGAAAAATAAAATTGTCCAATCAGGATATTTTAGATTTGTttcttattttatatattaggCTAACATGTTCATGTTTCAGGTTTTTTCAGTCCTGTAGCGATAAGCAAGTGTCCAGTCGTCATAGACAGTGCTGTGTACTGCTGTTTGAAATGTGAGCTGTATGTGTCCAGGCCCCTGACACTGGTTTTGCTTCCTGCAATGTTTGCTCGCTTCCACTAGATGGAGCAGACAACTACAACATCTGTCCTACAGATTAATCTGGTGCTGTACACACTGAAAACTCAGCTGAGGAAACAATTAGGCTCACATCTCCTGGTATTATTCAACATATTATTCATTTGCTGAATGGTGTAGCTGTTAACCTTGATTATCAtgtgaaattgaataaaacaacatagCATCTGTGTAGAATTATTAAAATTCTATTTGTCTGA
>XM_039816380.1
GGGGACACTATCCTTCGAGGTCTCTGCTATACCATATTTGACCTTGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACTTCTCCTTTCATGTGGGCCAATCTGGGCATTGGCTTGgccatctctctgtctgtggtaGGAGCAGCCTGgGGGATTTACATCACTGGCTCAAGCATCATTGGTGGTGGTGTCAAGGCTCCACGAATCAAAACCAAGAACTTGGTCAGCATCATCTTCTGTGAAGCTGTAGCAATCTATGGGATCATTATGGCTATTGTAATCAGCAACATGGCGGAGAGCTTCAGCGGAACAACCCCTGAGACCATCGGGGCAAGGAACTACCAAGCTGGTTACTCCATGTTCGGAGCCGGTCTGACTGTGGGTTTCTCCAACCTCTTCTGTGGCATCTGTGTCGGCATCGTGGGCAGCGGAGCAGCATTGGCAGACGCCCAGAACGCCAGCCTCTTCGTGAAGATCCTCATTGTGGAAATCTTTGGCAGTGCAATTGGCCTGTTTGGTGTCATTGTAGCCATTCTGCAGACATCAAAAGTGAAGATGGGAGACTAGAAGATGCATTCACATGCTGACAAGATAAAAAGACACTGCTGGAAAATAAGATGGATTATTGTGTAAATACATcgtaaattatttaaatgtctcTATATGCCTGGTATTGTTTTCAACCATCATTTATGCAAGAGTGGTACGTGCACACCCGACTGTCTTGTCTTGAGTGAAACATGAATGTTGCATAAGAAAAGTGGAAGAAAAATCACCAGTTGCCAGTGTGCAATTCTTGATACAAGTGAACCCTGCATCTCTCCTACAGTTCAGCTTATGGAGTAGTACAAGCAGAATGTACAAGAATAGTAGGATTTTAGATCAGCCAGTCTGTAGCCCTGAGAGCTGCCAAGACGTCTTGCAGCTTTATTTCATGGATTGAATTGGTCCTTAAACTTACTGATCGGTTCGTAAAGTACATTTTTTCTGAGCACTCTTGGATGAATGATGAGTTAAAAATGACACCAGAGTATTCGAAaatgtttgtgggtgtgtgcgtgtgtgtgtgtgtgtgtgtatgtgtatgctgGACACatgagttttcttttttcctgtgACGCATGAGGGTGTTTACCATTGTGTTCATTACTGTAGCCTGgacagtcagtttttttttttttttttttttttactcttatttgctaataataagCAAGTGGCtcaaatacagtatttgttAGGCCTCCTATTGCAGAAGTGACAGAGAATCTGTGAAGTTTTGGATTGGAGTACTGATCATGAGTCATTAGTGTAAAGTCACAGGAGAGTTGGACGTGCTCTTTGGGAGGCCAAATAGAGTCGGATCACAAGCAGCAGATGCTCTAAATATGTCATCCTGTCATTCAGTTCCCTAAAACGGTACCAAATGAGCCTCCTGAACATAGCTGCCAGCCATAACTTTCTTGTTTACCCCGGAGTCTCCtctatttttttgttcttttctttttcttttttttttttaacaaggttCCTTTTCAGTAGTTTTTACAAAGATGAATTGGACATGAAAGGGGATTGTTCAGTGTTTACCAGAGGGAGACCAAAAGATGTGGATACCCAGAATACCTTTCTTTGCAGATGCCCAAGTTAAATATCCTGTTTCTCAGATCCCTAATAAACCTTATATTGGACAAGAAAGAGGACTTTATTTTAGAGAGCACTTCAGTTACTAGTATTACCTTACACTCAATAGTAACTGGTAATATCTGCTGTAGTATCACCATCATTGGACTTGAGGTCTTTAGGGAAAATAATTTTGTACACACTGGTTCTGACTTTGATTTGATATAATCTCAGGTCGTCTGGCACCCAAAACTATGGACTCATCACATAAACAACTTTATGAATACAGATTTTTAAATTTGCTTATTTTACACACTTCACattgctttattttttattaaactgtCTTGTCTTGAATGTATGTCTTAACATGTTAGCTGTTTGAGTCTCTGTTCCAATTTATTTTCTAACATTCCTTAAAGAAgcttaatgtgtgtgtaaaactaAGTCTTGTTTGTGGATAGAGTGCAATTTGAATGACAAAATTAGACTCCTGCTATATCACAACAAGGCCATCTTTGACTGTCTAGTTTCCTATTGATGCTGACTCGTACCATGGCTACTTGTGAATCGTCTCAAatctttccttttatttcccCCCTCCAACCCTTTTGTGAAGTTCTGAATTAATATAAACATTGAATCTTAGCACGGGGAAACTGGATTGTCTTTAATATATGTGGACCTGGCCTCCCAAAGGTGTCAAAGCAGCAAAATCATCTTTTGTCCTTATTATGGTTTTATAATTAAGCCAAGCTGTATCTCCAGTACTCCTTTGGTAAACCAGGCCCTGTACCAAACCCCAGGCCTCAGTCAGTGTAGTTGCTACCGTGTGTGCATTATGTTGATGTGATggtgaacagaaaaaaaaaaaacgtcattgATTTTGACATTGTGTAtgataataacaaaaaacagaTCTGGCTTCATAAATGTCCTTGGAAAAATAAAATTGTCCAATCAGGATATTTTAGATTTGTttcttattttatatattaggCTAACATGTTCATGTTTCAGGTTTTTTCAGTCCTGTAGCGATAAGCAAGTGTCCAGTCGTCATAGACAGTGCTGTGTACTGCTGTTTGAAATGTGAGCTGTATGTGTCCAGGCCCCTGACACTGGTTTTGCTTCCTGCAATGTTTGCTCGCTTCCACTAGATGGAGCAGACAACTACAACATCTGTCCTACAGATTAATCTGGTGCTGTACACACTGAAAACTCAGCTGAGGAAACAATTAGGCTCACATCTCCTGGTATTATTCAACATATTATTCATTTGCTGAATGGTGTAGCTGTTAACCTTGATTATCAtgtgaaattgaataaaacaacatagCATCTGTGTAGAATTATTAAAATTCTATTTGTCTGA

Function


symbol description
atp6v0b Predicted to enable proton transmembrane transporter activity. Acts upstream of or within developmental pigmentation and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be part of proton-transporting V-type ATPase, V0 domain. Predicted to be integral component of membrane. Is expressed in female organism. Orthologous to human ATP6V0B (ATPase H+ transporting V0 subunit b).

NR:

description
V-type proton ATPase 21 kDa proteolipid subunit

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0048066 developmental pigmentation biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K03661 ATPeV0B, ATP6F; V-type H+-transporting ATPase 21kDa proteolipid subunit

RNA


RNA id representative length rna type GC content exon number start site end site
XM_039816379.1 True 3259 mRNA 0.41 8 20208710 20217298
XM_039816380.1 False 3001 mRNA 0.40 8 20208710 20218795

Neighbor


gene id symbol gene type direction distance location
b4galt2 b4galt2 coding downstream 1216 20026059 ~ 20207494 (-)
ccdc24 NA coding downstream 188449 19994125 ~ 20020261 (-)
LOC120567781 NA coding downstream 210629 19995533 ~ 19998081 (-)
LOC120567772 NA coding downstream 214989 19971490 ~ 19993721 (-)
LOC120567783 LOC102292715,LOC100691961,LOC101465604,LOC102195716 coding downstream 237818 19968416 ~ 19970892 (-)
ift22 ift22,LOC102787459 coding upstream 117903 20336698 ~ 20339393 (-)
LOC120567661 NA coding upstream 129714 20348509 ~ 20351231 (-)
pter pter coding upstream 190340 20409135 ~ 20415934 (-)
mmp16b LOC103369336 coding upstream 219672 20438467 ~ 20455878 (-)
cables1 cables1 coding upstream 314316 20533111 ~ 20558297 (-)
G116292 LOC107655868,LOC106532782,LOC108241678 non-coding downstream 271297 19924212 ~ 19937413 (-)
G116293 NA non-coding downstream 326301 19879905 ~ 19882409 (-)
G116274 NA non-coding downstream 456516 19745702 ~ 19752194 (-)
G116268 NA non-coding downstream 529280 19679189 ~ 19679430 (-)
G116181 NA non-coding downstream 560587 19645322 ~ 19648123 (-)
G116328 NA non-coding upstream 106854 20325649 ~ 20325874 (-)
G116366 NA non-coding upstream 168703 20387498 ~ 20388062 (-)
G116368 LOC101078271 non-coding upstream 171562 20390357 ~ 20391720 (-)
LOC120568747 NA non-coding upstream 361725 20580520 ~ 20585677 (-)
G116484 rock1 non-coding upstream 549840 20768635 ~ 20771028 (-)
xcr1b.1 NA other downstream 412951 19793342 ~ 19795759 (-)
G116138 NA other downstream 743330 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 985984 19221791 ~ 19222726 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other downstream 1273219 18931974 ~ 18935491 (-)
G115941 NA other downstream 1362433 18844905 ~ 18846277 (-)
tmie tmie,LOC102776014 other upstream 766006 20984801 ~ 20995567 (-)
higd1a higd1a other upstream 789253 21008048 ~ 21010576 (-)
G116969 NA other upstream 2043203 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 3126923 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 3211571 23430366 ~ 23430992 (-)

Expression



Co-expression Network