prpf38b (prpf38b)


Basic Information

Item Value
gene id prpf38b
gene name prpf38b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 26565990 ~ 26571804 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816393.1
CTGCACCACTAACGTTACAGTTCCGGTGTCCCATCCATGGTCCCACCTCGGAGTCGGAGCAGCATTTTAGCTACAACGACGGCGGGAAGTTGTTATCGTCAATTTAACCACAAATCAGAAACAAGGGAAGGGACGAATTTGATAACGATCGACATTTCACTATCTCATATTAATGGATCTGTAATCGGAATTACGCTAACTGTACGCTAAGATTAGCAGCGTGGGATTCAGCTATGGCTAACGTCGGAAACCAGCTACCAACACAGGCCGTTAGCAAGCCTGCACCAGGAAAACATGGAAATGTATTGCCCCTGTGGGGCAACGAAAAGACAATGAACCTCAACCCAATGATTCTTACGAATGTGCTGTCTTCGCCGTATTTCAAAGTTCAGCTTTATGAGCTAAAGACCTACCATGAAGTTGTGGACGAAATCTACTTCAAGGTGACTCACGCTGAGCCTTGGGAAAAAGGAAGCCGAAAGACTGCAGGCCAGACTGGAATGTGCGGAGGGGTGCGTGGAGTTGGGACCGGTGGTATTGTGTCTACTGCTTTCTGTCTTCTATACAAACTGTTTACTCTCAAGCTGACTCGCAAACAGCTGATGGGTCTGATCACTCACACAGACTCTCCATACATCAGAGCACTTGGCTTCATGTACATAAgATACACTCAACCTCCAGCAGATTTGGTAGAATGGTATGATGGCTTCCTGGATGATGAGGAGGAGCTGGACGTGAAGGCTGGGGGTGGCTGTGTGATGACCATTGGAGAGATGCTGCGCTCCTTCCTCACCAAACTGGAGTGGTTCTCCACTCTGTTCCCCCGTATCCCCGTGCCTGTGCAGAAGATTATTGACCAGCAGATGAAGGCTAGGCCTCGTAAAGTTGCTCCAAAGGAAacgcagcaggaggaggaggctgcAGTGGCAGAGGCAGGGGGGCAAGGGGAAAGACGCCACTCCAGGACACCCAGGCGGACACCGAGCCCCCGAAGGTCACCCAAACGGTCGAGAAGCAGAAGCCACCACCGCGAGAAAGAACGCCACGGCCCCAGCTTTGACCGAGAGCTGGAGAGAGAGCGTGACCGCCAGAAGAAGGAGAGGGACGGCAGGGACCGGGACCGAGGGGACAGGGAGAGACGGCGGTCCCGCAGTGCAGACAGGAACCAAGACCGGCGCGAGCGCAGAAGGAGTCGCAGTGGCAGCCGGGAACGAAGGAACGAACGCAAAGACAAAGAAAGGGATGGCGGGGAGGACAAGAGCAGGAGGAAGGACAGGGAACACCACAAAGATAGAGGCGCTGAGAGGGAAAGGTCCAAGGATAAAAAGAACAGGGGAGAGACTGATGACAGGAGGCACAAAGACGACAGGGAGAGGcacagagaagagaggaaggccAAAAGGTTGAGTCGGAGTCGAAGCAGGGACAGGAAGCACCGAAGTGGGGGAGAGGAGAAGAGCAGGAAAATAGAGGGCAGCCACAGCAGAGATAAAGACAGGGAGCGAGACGGAGAACAGCGGTCTCACAAAAGTAGCGGTAGCAAAGAGAGGAGCCATCATCAGCGAGAGTCCAGTAATGACCATTGTAAACATAGTGAAGGCAGGAGTCGGAGCACTGAGTAAATGTCGCCTACCAGCAATATTACTTCTTCTACTcctgtgtttttcttccttttttttttctacccagTTGTCTGGTTGGTCACTTGTGCTAAAGAGAAGGAATGTCAGCACATTGGACATCTGGAGTTGTTGTCTTTGCCCAATGTAATGTTGCtttacttttatgttttttctgccttttttttccacTCCCCATTAGATCCATTGTTAGTGTTCACTTGAAATttgaaaagtggcaaaaatggcATTCTATGGTGCGTTCGTTTGCCCCAGGATGAAGTGGGTTTGTACATACCGTTTCAGAGGCTGTCTACACACGATAAATGGTCCGATTTGCGATACTTGCTGGGTCGACGCTGTAAGTTCAGCTCAACACTGTCATCATATCATACATGTAATGTATAAATCATTTTTTTCCAGGCGGTACAAAaggcaaaacacatttttaaaatttgACTAATATTGCAATGCATATGTCTGGAATGTCTTCATATTTAAGCCTCTTGGTCAGCTGTTTTCTGATTGAACATGCTTCACAAGTCAACGGTTAAATTACAGATTTGAGCGTAGCAGCGACGTGGATCAGCAGTGACTCAGCACAAAGCAATTCTGTCCATGGTCGTGTGTAGACCGCCTGGAAATGTTTTAATCCTCCAAAGGGCAGTCTGCAGAGGGTAATTTTTTACCACACACACTGAGCCCTGCCTGTGCTGTGTTTGGGTTATTGCTCTGttgcattttgttttctaataaaatacttttacAAACAAAA

Function

symbol description
prpf38b Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome. Orthologous to human PRPF38B (pre-mRNA processing factor 38B).

NR:

description
pre-mRNA-splicing factor 38B-like

GO: NA

KEGG:

id description
K12850 PRPF38B; pre-mRNA-splicing factor 38B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816393.1 True 2394 mRNA 0.49 6 26565990 26571804

Neighbor

gene id symbol gene type direction distance location
gpsm2 gpsm2 coding downstream 57190 26496871 ~ 26508800 (-)
ccl20a.4 NA coding downstream 153887 26411167 ~ 26412103 (-)
capn10 capn10 coding downstream 155582 26400982 ~ 26410408 (-)
eif4e2 eif4e2,LOC102778094 coding downstream 165106 26392889 ~ 26400884 (-)
vwa5b2 vwa5b2,LOC104957800 coding downstream 217839 26334440 ~ 26348151 (-)
LOC120568700 fam102b,LOC103357623 coding upstream 593 26572397 ~ 26581219 (-)
LOC120567967 LOC104952378,LOC100703940,LOC102297870,LOC103357619 coding upstream 33057 26604861 ~ 26652958 (-)
LOC120568933 LOC104965402,LOC103357616,LOC102791396 coding upstream 102229 26674033 ~ 26715435 (-)
LOC120569007 LOC103357614 coding upstream 193677 26765481 ~ 26772945 (-)
armc6 armc6,LOC102784696 coding upstream 205233 26777037 ~ 26781098 (-)
G118076 NA non-coding downstream 86312 26477463 ~ 26479678 (-)
G118075 NA non-coding downstream 91034 26473887 ~ 26474956 (-)
LOC120569074 NA non-coding downstream 139192 26421450 ~ 26426798 (-)
G118002 NA non-coding downstream 256664 26308787 ~ 26309326 (-)
G117995 NA non-coding downstream 354242 26211508 ~ 26211748 (-)
G118186 NA non-coding upstream 160073 26731877 ~ 26732084 (-)
G118308 LOC107384102,LOC105934594,LOC104929657,LOC103366675,LOC108239475,LOC103395958,LOC102222760 non-coding upstream 388596 26960400 ~ 26963752 (-)
G118321 NA non-coding upstream 508203 27080007 ~ 27142908 (-)
G118328 NA non-coding upstream 547228 27119032 ~ 27190233 (-)
G118337 NA non-coding upstream 602748 27174552 ~ 27197648 (-)
camk2n1a camk2n2 other downstream 246395 26315770 ~ 26319595 (-)
G117732 NA other downstream 1642672 24922203 ~ 24923318 (-)
G117560 NA other downstream 2029494 24499380 ~ 24536496 (-)
LOC120568990 LOC101487892,LOC104941256 other downstream 2709369 23851073 ~ 23856621 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other downstream 3074378 23468620 ~ 23491612 (-)
G118175 NA other upstream 89817 26661621 ~ 26665952 (-)
cirbpa cirbp other upstream 248034 26819838 ~ 26824570 (-)
LOC120568986 epha4,LOC100711706 other upstream 1071523 27643327 ~ 27675360 (-)
G118524 NA other upstream 1141663 27713467 ~ 27718759 (-)
metap1d metap1d,LOC102783095 other upstream 1574467 28146271 ~ 28152770 (-)

Expression


Co-expression Network