LOC120568742 (vim)


Basic Information

Item Value
gene id LOC120568742
gene name vim
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19639508 ~ 19646524 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816422.1
AAACGCCTTCCCAGGCGCACTCCGTTGATGCAGTCGGGACACGAGCAACACCGAGCTACTGTCTGAAAAAAAATACCAGCAAGATGTCTTATAGAACAGCTCCACAGTCTTCTTACAAGAAGATGTTTGGCGGGGAGAGAGTCTCGACCAGGATCAGCTACTCCAGCCGCCAGTACTCCAGCCCGGTGCGCTCCTCCCGGGTATCCTAcggtctctcctcctcctccgcgaAGACCCAAAGGCTCCGGAGCAGCGCAGCCATGCCCCGGCTGGCCTCCGAGAACTTGGACTTCTCCTTGTCCGACGCCATAAACAGCGAGTTCATGACGAACCGCACCAACGAGAAAGCTCAGATGCAGTCGCTCAACGACCGCTTCGCCAACTACATCGATAAGGTCCGCTTCTTGGAGCAGCAGAACAAGATTCTGCTGGCGGAGCTGGAGCAGCTGCGGGGCAAAGGCACGTCCCGGGTCGGAGATCTGTACGAGGACGAGATGCGGGAGCTGAGGCGCCAGGTGGACCAGCTCAGCAACGAGAAGGCCCGGGTTGAAGTTCACCGGGATAACCTTGCAGACGACATAGACAGGCTGAGAGAGAAGTTGCAGGATGAGATATGCCAGCGGGAGGAGGCTGAGGGCAGCCTGCACAGCTTCAGACAGGATGTGGACAATGCTGCCCTCGCCAGATTAGACCTAGAGCGAAAGGTTGAGTCACTCCAGGATGAAATCAACTTCCTCAAGAAGCTGCATGATGAGGAAATGCTGGAGCTGCAGACCCagatccagcagcagcagcatgtgcAGGTGGACATGGAGATGGTTAAACCTGACCTTACAGCTGCTCTGAGGGACGTCCGTCTGCAGTATGAGAACCTGGCCTCCAAAAACATTCATGAGTCTGAGGAATGGTACAAATCCAAGTTTGCTGACCTCACCGAAGCGGCAGCCAGGAATAATGATGCTTTGCGACTGGCCAAGCAAGAGGCCAATGACTATAGGCGCCAAGTTCAGTCACTTACTTGTGAGGTGGATGCCCTTAAAGGAACTAACGAATCCTTGGACCGCCAgatgagagagatggaggagaacTTCTCACTGGAGTCGAGCGGTTACCAGGACACCGTCGGCCGCCTGGAGGAGGACATTCAGAACATGAAAGACGAGATGGCCCGTCACCTCCGGGAGTACCAGGACCTCCTAAATGTCAAGATGGCCCTGGACATAGAGATTGCCACCTACAGGAAGCTGCTGGAAGGAGAGGAGAACAGAATCTCCACCCCTCTGCCAAACTTCTCATCTCTAAACCTGAGAGaaacaatGAGTGATTTAAAACCTCATTTTGAAGCTACAAAAACTAAGAAGGTTCTCATCAAGACAATTGAGACCAGGGATGGTCAGGTGATCAACGAGTCAACCCAGAACCACGATGACATGGAGTAATAATGTCTTTGCCAAACAATCAACAAAAGCAATACTAAGAAATACATTTCACCGGGGCTACAAGCaagcaaacaacacaaaaagcaAACAGCTTCGAAAAGTGCCTTTTATATGTGTTGAACAAGTAAGCCTGTTAGTTGACACAGACTGTATTTTGCTTCCTCCTCTGCTGTTGTCACATTTGTTTAGACACAATAATGAAATCAGCACAACATAGAAATCCTTATTGAGGTCTACAAAAATCTTTCTTTGTAACCAAAGTAGTATTTTTTGATCAATACAGCATGCACACTCCAGGAAatctgtatgctaaatatgtcACAATTGCCTGTATGCAGCAATAAACCAGTAGGACTGTATCTCAATACTGTGCACACAAGGTGTAATACTTTGCTGGTATTTGGTATTTGCTGGTAGTGCTGATAATAGGTTTATGGTGATGAAGTAGAAGTAGTAAAACAATTCCTCATGTGAATAAAAGGTTAAATTGT

Function

symbol description
vim Acts upstream of or within wound healing. Predicted to be located in intermediate filament. Is expressed in several structures, including axis; integument; midbrain neural keel; nervous system; and neural tube. Human ortholog(s) of this gene implicated in atherosclerosis; autoimmune disease (multiple); and cataract 30. Orthologous to human VIM (vimentin).

NR:

description
PREDICTED: vimentin

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07606 VIM; vimentin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816422.1 True 1930 mRNA 0.49 9 19639508 19646524

Neighbor

gene id symbol gene type direction distance location
LOC120568599 LOC107383795 coding upstream 23654 19603644 ~ 19615854 (+)
rgs20 rgs20,LOC103361426,LOC100710193,LOC102795665,LOC101473767,LOC107098286,LOC104917737 coding upstream 46944 19579117 ~ 19592564 (+)
trnar-ucu_13 NA coding upstream 122563 19516853 ~ 19516945 (+)
myl12.2 LOC107098295,LOC102237517,LOC103361564,LOC101069867,LOC103135689,LOC103479826 coding upstream 126046 19510386 ~ 19513462 (+)
adcyap1b prp/pacap,LOC104943411,LOC108232947,LOC103135685 coding upstream 373238 19260195 ~ 19266270 (+)
pde1cb pde1c,LOC108232872,LOC103135697,LOC103479836,LOC102794047,LOC100712431,LOC103361422 coding downstream 1895 19648419 ~ 19751633 (+)
neurod6b neurod6,LOC102793566,LOC102311402,LOC101472195 coding downstream 122765 19769289 ~ 19772164 (+)
LOC120567771 NA coding downstream 156467 19802991 ~ 19826972 (+)
LOC120567775 adcyap1r1,LOC103396405,LOC102193585,LOC100710985,LOC104917732 coding downstream 208464 19854988 ~ 19882428 (+)
eef1da LOC106532782,LOC101466496,LOC102194655,LOC102290633,LOC103361414 coding downstream 274791 19921315 ~ 19947470 (+)
G116175 NA non-coding upstream 1096 19638170 ~ 19638412 (+)
G116174 NA non-coding upstream 1385 19637878 ~ 19638123 (+)
G116168 NA non-coding upstream 11889 19627254 ~ 19627619 (+)
LOC120568776 NA non-coding upstream 15324 19619229 ~ 19624184 (+)
G116128 atp6v1h non-coding upstream 71490 19554787 ~ 19568018 (+)
G116200 NA non-coding downstream 105969 19752493 ~ 19754448 (+)
G116204 NA non-coding downstream 186599 19833123 ~ 19834373 (+)
LOC120567786 NA non-coding downstream 190290 19836814 ~ 19840804 (+)
G116214 NA non-coding downstream 226109 19872633 ~ 19873049 (+)
G116215 NA non-coding downstream 238071 19884595 ~ 19885699 (+)
emilin2a NA other upstream 174127 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 587266 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 914061 18720365 ~ 18725447 (+)
LOC120568691 NA other upstream 965368 18660429 ~ 18674140 (+)
skila skil,LOC102782637 other upstream 1037245 18566633 ~ 18602263 (+)
LOC120567833 gbg5 other downstream 726703 20373227 ~ 20375633 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 1236093 20882617 ~ 20915322 (+)
LOC120568354 NA other downstream 2224429 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 2961525 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 2994986 22641510 ~ 22681293 (+)

Expression


Co-expression Network