stam (stam)


Basic Information

Item Value
gene id stam
gene name stam
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19168623 ~ 19181368 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816451.1
GATCACCATCACCTGACGATGACATGCTATTTTTTCAGGGCAATTTGTACCTTATGGTTCACTTTCTCTAGTGTACAACCAAGACCGATTCGTTAACAGCTGCGTGACTGTTAAATTATAGTTGTTGACAGCGGTTTATTAAACACCCGACTGTCTGCTTAAGTTACCCAGAATGCCTCGCTTGTTGGAGTGACTGTGTAGAATAGCAtcagccagctagctagctaactacatTTGACATTCATGAAGTTGTCGCTACTATGCATGTTTACTGTATGAAATAAGAtaaaagagggaaagaaaataaaagtggaaGGCGATatctgttgttgtcattacaccAGCAATGCCTCTCTTCACGACCAACCCATTTGACCAAGATGTTGaAAAAGCAACCAGTGAGATGAACACAGCTGAGGACTGGGGCCTCATTCTGGACATATGTGATAAGATAGGGCAGTCACGCACTGGGCCTAAAGAATGTCTCCGTTCTATAATGAGAAGAGTGAACCATAAGGATCCCCACGTGGCCATGCAGGCACTGACTCTCCTTGGTGCTTGTGTCTCAAACTGTGGCAAGATATTCCACTTGGAGGTGTGCTCCAGAGAGTTTGCCAGTGAAGTCAGCAACGTCTTAAACAAGGGCCACCCTAAAGTGTGTGAGAAGCTGAAAGCCTTGATGGTGGAGTGGGCAGAGGACTTCCGTAACGATCCCCAACTCAGTCTGATCTCAGCTATGATCAAGAATCTACGCGAGCAGGGTGTAACTTTCCCAGCTGTCGGGTCTCAGGCTGCAGAGCAAGCAAAAGCAAGCCCTGCTTTAGTGGCAAAGGATCCCTCCACCtcaaacaaaaaagaagaagaagacttggCCAAAGCTATTGAGTTGTCATTAAAGGAGCAACGTCAGCAGCCGCAGACCTCCCTGTCGAGCCTTTACCCAAACACTTCCAGCCTACTCTCCTCAAACAAATCCGACGGCAGGAAAGTCCGTGCCATCTACGACTTTGAGGCTGCTGAGGACAATGAGCTCACCTTCAAGTCAGGAGAAATCATCACTATCCTGGACGATAGtgacCCCAACTGGTGGAAAGGGGAAACATACCAGGGAGTGGGGTTGTTCCCCTCTAACTTTGTCACAGCTGACCTCACTGCAGAGCCTGAGATGaTgaagacagagaagaagagtGTACAGTTCAGTGAGGACATCCAGGTGGAGACCATAGAGCCCGAACAAGAGCCTGTATATATAGACGAAGACAAAATGGACCAGCTACTGCAGATGATCCAGAGTGCAGATCCCACAGACAACCAGTCGGACAGCGTCGAGTTACTACAGTTGGAAGGTGCCTGCAATCAAATGGGGCCCCTCATTGACCAGAAGTTGGACGATATAGACAGGAAGCACTCCGAGCTGTCAGATCTGAATGTGAAGGTGATGGAAGCTCTGTCTTTGTATGCCAAGATAATGAATGAAGATCCAGTTTACGCCATGTATGCCAAGCTACAGAGCCAACAGTACTACATGCAACAACCTGCCAACGCAGCACAACAGGTCTACGCTGGTCAGCCTGCCTCAGGTTCGTATGCCATGAGCGGTACGACGGTGCAGGGTTACACTGTTCCCATGGAGCAGCTTCCAGCTGGAACCCCCATACCTGGTCAGCCAGCTCCCAGTGACGTTCATATGTACATGGGCCAGCCACCAGTCTACACTGCAGCTCCAGGCAGCATGGCCCCAGCAGACTTACAGTCCTACCAGCTCCCAGCCCCTGGCCCGCCCCCAGGCATGACGCAGATGCCAAACTACAGCACCCCCTCTGGGCCGAGCATAGCACCTTCCTCAGACCACTCACAGGCCCCCTACTCAGAGAAAGCCTTGCTATAGGCCCCCCCCCCCGAGCTCACAGTTATCGCCACGCATACACGTGAAGCAGACCTGATCAAATAGTGGTCttagatcatttattttattatgttttatgatTAGTTTTATCATAGAACACCAGCTGGATGAAACAATTCAAATAGAGCAGACTAAACAACTTGACTTTTGGCACACTTTGAGTTGTTTTATCTGGCAGATAAATATACAGTTACACTTCTCACTCCAGGTTTAGAAGTGATCATGAGAGTTTGATTTGAAGAGCTCCCACCAAGACATGCATAGTATGAAAATGGACACACTGTGTTCTTTTAATTGATGATGTTTCTTCATTTTCACTCTTCTTCTCCATGCCTTTACATGACTCAGATGTGAAGACATGGAGGAGCTTTTATTTGCACTTTTATCTTCTGTTGCACTTATTTAAGTTTTGGTCATTCAAGCCTGATCACTTCCAAATCTAGATGTATAAGCAATATATGCAttgtccattttttatttacGAGACCTGACTTATTGCTCCCTTTTTATAATAGGACTTTTGAAAAATGGtggtaatgttttattttatggttCCGAACTACATAATGTGGTACCAATTATAGAGGAAATGAGACCAAGTTATTTTAGTTAGGCTTTAGGTAAATTAAAAATCAGTTGAGGAATTTCCTTtttaattaatgaatatttactTTGCTTTAAATGGAGCCATTCATTTGTCATTTATCATTGGAAACTTTATTCTTCATACTGTGTATATTTTTGGATGTTCAGCTGACCTACTGTGTACTGACTTCAAACTTTTTAGGTTACCCTAGCAATTAATTTGAATTAATTAACTGGAAGAGAATTGAACTGCTTATCTGCAGTTTTTTACCCATAGTTAGTATCAAATTCTACAGCTCTTTCCTGGAAACTATTAAGAAATTACGGACctgtaaaataaagcattaaCAAAATTGCTTTGAGAAAACAAGTGTAGCTGTAGCCACTTATCTAACCtaactactatatatatatatatatatatatatatatata

Function

symbol description
stam Predicted to be involved in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in early endosome membrane. Predicted to be part of ESCRT-0 complex. Is expressed in immature eye and nervous system. Orthologous to human STAM (signal transducing adaptor molecule).

NR:

description
signal transducing adapter molecule 1 isoform X2

GO: NA

KEGG:

id description
K04705 STAM; signal transducing adaptor molecule

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816451.1 True 2926 mRNA 0.44 14 19168623 19181368

Neighbor

gene id symbol gene type direction distance location
si:dkey-32m20.1 NA coding downstream 2480 19160906 ~ 19166143 (-)
LOC120568757 LOC103360862,LOC102206787,LOC102301563 coding downstream 41428 19119142 ~ 19127195 (-)
LOC120568598 NA coding downstream 201848 18963255 ~ 18966775 (-)
si:ch211-106h4.4 NA coding downstream 207256 18937382 ~ 18961367 (-)
si:ch211-106h4.6 plxdc2,LOC103360851 coding downstream 238239 18919199 ~ 18930384 (-)
colec12 LOC104926162,LOC103361572 coding upstream 814 19182182 ~ 19216250 (-)
yes1 LOC104926159,LOC103361570,LOC101479012 coding upstream 45469 19226837 ~ 19255535 (-)
lpin2 LOC103361566 coding upstream 284584 19465952 ~ 19485956 (-)
myom1a LOC103361565 coding upstream 305323 19486691 ~ 19509566 (-)
bag1 bag1,LOC102796959 coding upstream 332175 19513543 ~ 19516574 (-)
G116050 NA non-coding downstream 93 19166515 ~ 19168530 (-)
G116034 NA non-coding downstream 21848 19130548 ~ 19146775 (-)
LOC120568774 NA non-coding downstream 53275 19045675 ~ 19115348 (-)
G116027 NA non-coding downstream 67710 19099802 ~ 19100913 (-)
LOC120568773 NA non-coding downstream 104932 19062277 ~ 19063691 (-)
G116080 NA non-coding upstream 39347 19220715 ~ 19221643 (-)
G116085 NA non-coding upstream 41895 19223263 ~ 19223489 (-)
G116082 NA non-coding upstream 42460 19223828 ~ 19224080 (-)
G116091 NA non-coding upstream 228681 19410049 ~ 19410276 (-)
G116182 NA non-coding upstream 425297 19606665 ~ 19617420 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other downstream 233132 18931974 ~ 18935491 (-)
G115941 NA other downstream 322346 18844905 ~ 18846277 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other downstream 448036 18703064 ~ 18720587 (-)
sppl2 sppl2b other downstream 674135 18480670 ~ 18494488 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other downstream 1110464 18052984 ~ 18058159 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other upstream 40423 19221791 ~ 19222726 (-)
G116138 NA other upstream 283332 19464700 ~ 19465380 (-)
xcr1b.1 NA other upstream 611974 19793342 ~ 19795759 (-)
tmie tmie,LOC102776014 other upstream 1803433 20984801 ~ 20995567 (-)
higd1a higd1a other upstream 1826680 21008048 ~ 21010576 (-)

Expression


Co-expression Network