XLOC_004737 (prkcea)


Basic Information

Item Value
gene id XLOC_004737
gene name prkcea
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 25640480 ~ 25770232 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009382
GGAATTGGATTGTTTACGTATGCTTCCCATTACGTGGAAAGACGGACCGTAAACAAAAACAGGAGCCTCTGGCTTTGCATATCGCGTTTTTGCATCCTATTTGATTGTTCTGCTCAAATGAGAGAATCACGTTGATCCGTCTAGTGGTTTGGGGGATTAAATCATCACCGCATCCATCTATACATGCATGTATACTGATGACGTGATGACATCTACGGGTATAGCGACCCCCTGAATCAAAACCTGCTTTTGAAGCCGTCTGTTTTCTCAAAGAAGCCAGCTGCATCTCGACTGAGCGTCATCATGGTGGTTTTTAATGGAGTGTTGAAGATCAAGGTTTGTGAAGCTCTGGATCTGAAACCCACCGCATGGTCTCTCCGGCACGCTGTGGGTCCGAAGACCCAGACCTTCCTCCTGGACACGTATATCGCCCTCAATGTGGATGATTCCCGAGTGGGACAAACTTCTACCAAGCAGAAGACTAACAGTCCGGCTTGGAATGATGAGTTCGTAACAGAGGTTTATGATGGGAAGAAAATCGAACTTTCTGTCTTTCACGATGCACCCATCGGTTATGATGACTTTGTGGCCAACTGCACTATACAGTTTGAAGACCTGCTGCAGAATGGTAGTAGGCACTTTGAAGATTGGATTGACCTGGAGCCTGAGGGTAAGGTGTACGTCATCATCGATCTGTCAGGATCCTCCTGCGAAGCAGCAGCATCATCCAATGAAAATGAGGAGAGGGTGTTTCGTGAGCGGATGCGTCCCCGAAAGCGCCAGGGGGCCGTCAGGAGGAGAGTCCATCAGGTCAACGGGCACAAGTTCATGGCCACCTACCTGAGACAACCTACCTACTGCTCCCACTGCAGAGATTTCATCTGGGGTGTGTTGGGGAAACAGGGGTATCAGTGTCAGGTTTGTACCTGTGTGGTCCATAAGAGATGCCATGAACtcataataacaaaatgtgctggCATGAAGAAACAAGAAGACACTCCTGAAGAGGTCGGCTCTCAGCGCTTCAGTGTAAACATTCCACACATGTTCAGCATTCACAATTACAAAGTCCCAACCTTCTGCGACCACTGCGGCTCTTTACTATGGGGTCTGATGAGGCAAGGCCTGCAGTGCAAAGCCTGTAAAATGAATGTCCATCGGCGTTGTGAAAGTAATGTAGCTCCTAGCTGTGGTGTCGATGCCCGAAAAATCGCTAAAGTGCTTTCTGATCTCGGGGTGACGCCAGATAAAATCTCCAACAGTACCCAACGCAGGAAAAAGTTGACTCCAGGGCAGGACCCTCAGCAATCCACAACAGAAGCCCCTTCATCAGAAGAGTCTGACCGGTGCAAATCAGCTCCAACCTCACCTTGCGACCAGGCAGAGCTTGCAGAACTGGAGAGTATCCGTAAGGCCCTTTCTTTCGGTCAGGAGCACAagtcttcctcctcttcctcgtGCAGTGGTGTTCAGAGCACAGAAATTGAGGGCCGGGAGAATGGAGACCTAAAAACCGTCCAGACTAAGAGGATGAGCCTCACTGACTTCTCATTCATCAAAGTGTTGGGCAAAGGCAGCTTCGGGAAGGTGATGCTGGCTGAGTTGAAAGGCACAGATGAAGTTTACGCTGTGAAAGTTTTGAAGAAAGATGTCATCCTTCAAGACGATGATGTTGACTGCACTTTGACTGAGAAACGCATTCTGGCCCTGGCTAGAAAGCATCCCTATCTAACCCAACTTTTCTGCTGCTTCCAGACAAAGGATCGCTTGTTCTTTGTTATGGAGTATGTGAACGGAGGAGACCTGATGTTTCAGATCCAGCGCTCACGGAAGTTCGATGAAGCTCGCTCTCGTTTTTATGCAGCTGAGGTCACTTCAGCACTGATGTTTCTGCATCAGCACGGCGTCATATACAGAGATCTAAAGCTAGATAACATTCTGTTGGATGCTGAAGGACATTGTAAACTGGCCGACTTTGGCATGTGCAAGGAGGGTATTTTGAACGGGGTCACGACCACCACCTTCTGCGGGACACCGGATTACATCGCTCCTGAGATCCTGCAGGAGTTGGAGTACGGCCCATCAGTGGACTGGTGGGCTCTGGGTGTTCTGATGTACGAGATGATGGCCGGTCAGCCTCCGTTTGAAGCCGACAATGAGGATGATCTGTTCGAGTCCATCCTCCACGATGACGTCCTTTATCCCGTGTGGCTGAGTAAAGAAGCTGTCAGCATCCTGAAAGCTTTCATGACGAAGAATCCCAGTAAGCGTCTGGGCTGTGTAGTGACCCAGGGGCTGGAAGAGGCCATTAAAGTCCACCCATTCTTCAGAGAGATCGACTGGGTCCAGCTGGAACAGAGGAGGATCAAGCCCCCCTTTAAACCTCGCATTAAAACCAAGCGCGACGTGAATAACTTCGACCAGGACTTCACTCGCGAGGATCCTGTTCTCACACCAGTAGACGACGCCATCATCAAACAGATCAACCAGGAGGAATTCAAGGGCTTCTCGTACTTCGGAGAGGAGGCTTTGTCTTAAACCCCAACCTAGAATCTATCAGCTCAAATATATATCAAACACACCCACAAAAAAACACTTGATGCATCGCAATACATGAATACACTCTCCTCGGACCAGACCAGATCAGAAAGCCAGTCCCTTGTGATTCAGTTTTCTTTTACTGCTGTTTTTAGTCGTTTAGTCTTCTTtacatctcaaaaaaaaaataaataaataatggatttCATCCCAGGCCTCAACAACCAATCAGAAACAAAACGAATGTTCTACAGAGCCCAAGAAAGAAGGGTCGGAACGCGCTACCTTAAACCAAAATTTGACGATACCAATGATTGTACCATTTCGGATACTTTTAAATGAAAGGTTGTGTGCCCTTGAGGAAGAATCGACCCTGCATACGTGACAATAAGACATGTGCTGTGCATTCAAATGCCTTCTTGTGTATTCAGGTGACATTTCGGGAGCAATTTTATAAGATAAACAGAGACatttgtagtatatatatatatatatatatatatatatatatatatatatatatataaatatatatatataaatatattccaTCACAGTGTTATGAGAGTTCATTAGGAATGGTAACCTGCTGTATATGGGTTGTGTCGGCCtgagtaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatgtgtttgcatGAATGAGAGCGAGAGGCCCTTGCCCTCCTGAAGCTCTACGGTTGTTTTCATGTTGTTTCGCAACGGCTTTTCATTTGCGCTCGAGTGTGTaacgtgcgtgtgtgtttttgccGTGTGCCGCCGCTATGCACAAAAAAGGTGTAGCTGTGGCGAGGAAAGACAAGCACTTGTTGCTGTCAGGTCATTTTGTACAGAACATGTACATAGTATTCGCTCCAAAAAGCCTGTGAACGCTTCTTAGGGTAGGCAATTGTTTGCATGGTCTTGCGAAACGTGTCGTTATTGAGTAGCATCAGTTTACGGAAagattttatgattattttttttatatatatctatgTGCAATACCCTGAACACATTTCTCCccctcatattattattattattattattatgattatttccttctattttgtgtgtgttttataggtTAGAGCTTCACCAAAGGCTTTCTCGCTCTCGGTTTCATGCTCCTCTCTGCCGTTCTCGTGTATATAGTTTGCTGAAAGTACATAAGCTGTGGAATGTAGTGGAAAACATGCGTGAGCTTTTAATTTATTCGATATACATGTAGCTACGCTTCCCTTTTTTTGTGTCAACGCGTCTTCTTGTGTTACTTTATTTCAGCCTTCTCTTTTGTGAACCCCCTTGTAGTTGAATTATTGACTCGTGCAATGTGAAAGACTTTAAAGGACGAGGTGGACTAAACAAAAAGGGTACATTTCAGGCGTACTAATTAAAACCTTCTGGAATGTGATGACTTTTGCTTTAGCGATTTGaggatttctttttgtcttactttttttttttctctctccaagTTGTTCCActgctttttctttttaaaccgTGTCTGTGGGTTGATCATGGTAGCTAGGTCAATGATCTTCTTTGAAGCCTTTTCTCTCGCAGGCACCTTCCTGTCTGTCGCCCTCACTGTATTATGCCAAACGTCTCGTTCAGCTTTATTTTCTCCGtcgtttcctcttttttttttaactgtaaaggAATGAACTTGATATATACTGTAGGACGCATCCATGGTCTGTCTTCAAAGTCAAAACAGAGTAAATAAACTAAGAATTACCTCTTAAATGAAGTGCAAAGATTTCTCTTGCTGAATATTGAATATTTGCGCATacagtattaaaatacataaatgtttCATATGTATGATAGTGCTGTATTATATACATCTGGTATTGGACTTTAGTTTCTGTGTGGTGAAGCTTCATGTGCACAGAGGTATTTCTTTTTTCTGGATACACTAAGCGTTATCTCATTGTAAGCATTTTACTATGTGCCAAATGTACTGTCATCTACAGGATGTGAATGTTTTGTTTAACCTATTAAACCCTAAGATGTATGAAAAAT

Function

symbol description
prkcea Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Is expressed in brain; peripheral neurons; and spinal cord. Orthologous to human PRKCE (protein kinase C epsilon).

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004697 protein kinase C activity molecular_function
GO:0004698 calcium-dependent protein kinase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8191 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm. Is expressed in brain; peripheral neurons; and spinal cord. Orthologous to human PRKCE (protein kinase C epsilon).

Ensembl:

ensembl_id ENSDARG00000003008

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009382 True 4572 mRNA 0.44 15 25640480 25770232

Neighbor

gene id symbol gene type direction distance location
XLOC_004736 six3b coding upstream 37139 25600685 ~ 25603341 (+)
XLOC_004735 NA coding upstream 136100 25502406 ~ 25504380 (+)
XLOC_004734 ppm1bb coding upstream 153236 25432626 ~ 25487244 (+)
XLOC_004733 CR932077.1 coding upstream 210109 25312018 ~ 25430371 (+)
XLOC_004732 mta3 coding upstream 355970 25223799 ~ 25284510 (+)
XLOC_004739 epas1a coding downstream 5502 25775734 ~ 25830268 (+)
XLOC_004740 glud1b coding downstream 75262 25845494 ~ 25881944 (+)
XLOC_004741 mmrn2b coding downstream 175328 25945560 ~ 25948479 (+)
XLOC_004742 itgb3b coding downstream 664246 26434478 ~ 26461744 (+)
XLOC_004743 ndel1a coding downstream 697615 26467847 ~ 26487363 (+)
XLOC_004731 CR848736.1 non-coding upstream 425753 25201543 ~ 25214727 (+)
XLOC_004728 CR385067.1 non-coding upstream 565360 25073305 ~ 25075120 (+)
XLOC_004726 NA non-coding upstream 695976 24944172 ~ 24944504 (+)
XLOC_004744 NA non-coding downstream 719121 26489353 ~ 26491973 (+)
XLOC_004748 NA non-coding downstream 819412 26589644 ~ 26593298 (+)
XLOC_004751 NA non-coding downstream 921587 26691819 ~ 26692051 (+)
XLOC_004752 NA non-coding downstream 967199 26737431 ~ 26834192 (+)
XLOC_004754 BX469896.1 non-coding downstream 1124089 26894321 ~ 26896616 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_05490285_05556254 PRKCEA, PRKCE, PRKCEB coding CI01000063 null 5490285 ~ 5556462 (+)
bowfin (Amia calva) AMCG00013365 LOC108437159,LOC101159746,LOC108259727,LOC103469320,LOC102304961,LOC108239241 coding CM030125.1 CM030125.1 29586251 ~ 29627558 (+)