tcea1 (tcea1)


Basic Information

Item Value
gene id tcea1
gene name tcea1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19593467 ~ 19601472 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816460.1
CTACTCAGGTCTGCTACACGGCGGTGTGCGGTTCCCGGTCCCTCAAGTAGACGCCGCCGCTTTCCCTTCAGTGTCGTGTTCTTTGTCGCgatttttcttttccatttGCTCCTGATTTTTGGATTTCATCAGATCAGTCAATATGGGcaaaaaggaggaagaggagatcATCAGAATTGCAAAGAAGATGGATAAAATGGCGCAGAAGAAAAACGGGGCCGGGGCTTTGGACTTATTGAAGGAGCTGCGAAGTATCCCCATGACTCTCGAGCTGCTTCAGTCTACCAGAATTGGGATGTCCGTTAACGCCATCCGCAAACAGAGCACAGACGACGAGGTGACATCCCTAGCCAAGTCCTTGATCAAATCATGGAAGAAGCTTTTAGATGAGCCTGGTGGTGGAGAGAAACCTTCAgatgaaaagaggaaagagcCAACAACGCCAGTTTCTCCCTCGCAGGGaagcccagaggcaaaagaagAAAGCAGCTCCAGCAGTAACTCCAGCAGCAAGAGTGAGCCCGCTGAAGTTTCAACCAACACATTGATCAACACCTTTCCTCGCGCCCCCAGCACCTCCGACTCTATCAGGATCAAGTGCCGAGAGTTGCTGGCCAATGCTCTGCAGGCTGGAGatgATTATATTGCTATTGGTGCTGATTGTGATGAACTTGGAGCACAGATCGAGGAAGTTATCTTTCAAGAGTTTAAGAACACAGACATGAAATACAAGAATCGTGTGCGGAGCCGAATCTCGAACTTGAAGGATATGAAGAACCCTAATTTAAGGAGGACTGTGCTATGCGGGAGTGTAACCCCCGAGCGGATGGCTAGGATGACCGCAGAGGAAATGGCCAGTGATGAGCTGAAGGAAATGAGAAAGAATTTGACCAAAGAAGCTGTCAGGGACCACCAGATGGCCACCACTGGAGGCACTCAGACCGATCTATTCACCTGTGGCAAGTGCAAGGGGAAGTGCTGCACCTACACACAGGTTCAAACTCGCAGTGCTGATGAGCCAATGACCACGTTTGTCTTCTGCAATGAATGTGGAAATAGATGGAAGTTTTGCTGAAGCTACACGGAACTTCGACAAGTAGCAACATTTCTGGACCAGGTTGTGTCTCTCTGCAACAGACTGGAGCtttgtattttgttgtacatAGTACACAACATGCCATACAAAGATGCCACAGGTTACCGTTTGAATAAATATCCTGTTCATAGATTGAGCTTATTGTCAGTCCCCCAATGCCCTCCCCCCAAATCTTTTACTATTGTTATTAGTTGTTTTGTCACTGTCAGATATATGCGATCAATCTTGTCTCATTCTCTTTTATCTGCATTTTTTATATGTAGTTTTAACACTTTGGACAATGTTGATTTGCTTTTCCCTTACAACATtgcattgttttatttaatttcccaAATAAAAGTGTAATCCATTTGAttaaaaataagtgtttttcaTTAG
>XM_039816461.1
AACTACTCAGGTCTGCTACACGGCGGTGTGCGGTTCCCGGTCCCTCAAGTAGACGCCGCCGCTTTCCCTTCAGTGTCGTGTTCTTTGTCGCgatttttcttttccatttGCTCCTGATTTTTGGATTTCATCAGATCAGTCAATATGGGcaaaaaggaggaagaggagatcATCAGAATTGCAAAGAAGATGGATAAAATGGCGCAGAAGAAAAACGGGGCCGGGGCTTTGGACTTATTGAAGGAGCTGCGAAGTATCCCCATGACTCTCGAGCTGCTTCAGTCTACCAGAATTGGGATGTCCGTTAACGCCATCCGCAAACAGAGCACAGACGACGAGGTGACATCCCTAGCCAAGTCCTTGATCAAATCATGGAAGAAGCTTTTAGATGAGCCTGGTGGTGGAGAGAAACCTTCAgatgaaaagaggaaagagcCAACAACGCCAGTTTCTCCCTCGCAGGGaagcccagaggcaaaagaagAAAGCTCCAGCAGTAACTCCAGCAGCAAGAGTGAGCCCGCTGAAGTTTCAACCAACACATTGATCAACACCTTTCCTCGCGCCCCCAGCACCTCCGACTCTATCAGGATCAAGTGCCGAGAGTTGCTGGCCAATGCTCTGCAGGCTGGAGatgATTATATTGCTATTGGTGCTGATTGTGATGAACTTGGAGCACAGATCGAGGAAGTTATCTTTCAAGAGTTTAAGAACACAGACATGAAATACAAGAATCGTGTGCGGAGCCGAATCTCGAACTTGAAGGATATGAAGAACCCTAATTTAAGGAGGACTGTGCTATGCGGGAGTGTAACCCCCGAGCGGATGGCTAGGATGACCGCAGAGGAAATGGCCAGTGATGAGCTGAAGGAAATGAGAAAGAATTTGACCAAAGAAGCTGTCAGGGACCACCAGATGGCCACCACTGGAGGCACTCAGACCGATCTATTCACCTGTGGCAAGTGCAAGGGGAAGTGCTGCACCTACACACAGGTTCAAACTCGCAGTGCTGATGAGCCAATGACCACGTTTGTCTTCTGCAATGAATGTGGAAATAGATGGAAGTTTTGCTGAAGCTACACGGAACTTCGACAAGTAGCAACATTTCTGGACCAGGTTGTGTCTCTCTGCAACAGACTGGAGCtttgtattttgttgtacatAGTACACAACATGCCATACAAAGATGCCACAGGTTACCGTTTGAATAAATATCCTGTTCATAGATTGAGCTTATTGTCAGTCCCCCAATGCCCTCCCCCCAAATCTTTTACTATTGTTATTAGTTGTTTTGTCACTGTCAGATATATGCGATCAATCTTGTCTCATTCTCTTTTATCTGCATTTTTTATATGTAGTTTTAACACTTTGGACAATGTTGATTTGCTTTTCCCTTACAACATtgcattgttttatttaatttcccaAATAAAAGTGTAATCCATTTGAttaaaaataagtgtttttcaTTAG

Function

symbol description
tcea1 Predicted to enable translation elongation factor activity and zinc ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated; transcription, DNA-templated; and translational elongation. Predicted to be located in nucleus. Orthologous to human TCEA1 (transcription elongation factor A1).

NR:

description
transcription elongation factor A protein 1-like isoform X2

GO: NA

KEGG:

id description
K03145 TFIIS; transcription elongation factor S-II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816460.1 True 1474 mRNA 0.45 10 19593467 19601470
XM_039816461.1 False 1473 mRNA 0.45 10 19593467 19601472

Neighbor

gene id symbol gene type direction distance location
atp6v1h atp6v1h coding downstream 20180 19542850 ~ 19573287 (-)
oprk1 LOC104917759,LOC105937811,LOC103479830,LOC108232774 coding downstream 61237 19528163 ~ 19532230 (-)
chmp5a chmp5,LOC103361429,LOC101475708 coding downstream 68985 19519536 ~ 19524482 (-)
bag1 bag1,LOC102796959 coding downstream 76893 19513543 ~ 19516574 (-)
myom1a LOC103361565 coding downstream 83901 19486691 ~ 19509566 (-)
LOC120567744 NA coding upstream 188153 19789625 ~ 19791903 (-)
LOC120567779 LOC101467836,LOC102791796,LOC104956506 coding upstream 281430 19882902 ~ 19916863 (-)
LOC120567774 LOC104956512 coding upstream 345768 19947240 ~ 19956332 (-)
ftr67 LOC104956513 coding upstream 355308 19956780 ~ 19962763 (-)
LOC120567785 LOC103359745,LOC104917727,LOC103396371,LOC104956511,LOC102292405 coding upstream 362354 19963826 ~ 19967558 (-)
G116091 NA non-coding downstream 183191 19410049 ~ 19410276 (-)
G116082 NA non-coding downstream 369387 19223828 ~ 19224080 (-)
G116085 NA non-coding downstream 369978 19223263 ~ 19223489 (-)
G116080 NA non-coding downstream 371824 19220715 ~ 19221643 (-)
G116050 NA non-coding downstream 424937 19166515 ~ 19168530 (-)
G116182 NA non-coding upstream 5193 19606665 ~ 19617420 (-)
LOC120568771 NA non-coding upstream 30025 19631497 ~ 19632872 (-)
G116180 vim,LOC107098299 non-coding upstream 38054 19639526 ~ 19640657 (-)
G116181 NA non-coding upstream 43850 19645322 ~ 19648123 (-)
G116268 NA non-coding upstream 77717 19679189 ~ 19679430 (-)
G116138 NA other downstream 128087 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 370741 19221791 ~ 19222726 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other downstream 657976 18931974 ~ 18935491 (-)
G115941 NA other downstream 747190 18844905 ~ 18846277 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other downstream 872880 18703064 ~ 18720587 (-)
xcr1b.1 NA other upstream 191870 19793342 ~ 19795759 (-)
tmie tmie,LOC102776014 other upstream 1383329 20984801 ~ 20995567 (-)
higd1a higd1a other upstream 1406576 21008048 ~ 21010576 (-)
G116969 NA other upstream 2660526 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 3744246 23345718 ~ 23361580 (-)

Expression


Co-expression Network