chmp5a (chmp5,LOC103361429,LOC101475708)


Basic Information

Item Value
gene id chmp5a
gene name chmp5,LOC103361429,LOC101475708
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 19519536 ~ 19524482 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816465.1
CGTCAACCAATGGGAACCGTTTGCGTCTGAACCGTTGCTTCCGGGTGTGTTAAATGAAGAAATCCTTTTTCATTTGAtgctttttgtattttgtaaagtaactaaaagctACAGGGACACAAAACGTTTAGAAAATGAACAGAATATTTGGACGCGGAAAGCCGAAAGCGCCTCCCGCGAATCTGTCGGACTGTATCGGCAATGTGGATGCGAGATCAGAGTCCATAGAGAAGAAGATTGGCGGACTAGACGCTGAACTTGTCAAGTACAAGGATCAGATGAAGAAGATGAGAGATGGGCCCTCCAAGAACATGGTGAAACAGAAGGCCATGAGAGTCCTGAAGCAGAAGAGAATGTATGAAGGTCAAAGAGAGCAGCTGGCTCAGCAGTCTTTTAACATGGAGCAGGCAAACTACACCATCCAGACATTAAAGGACACCAAAACAACAGTGGAGGCCATGAAGATCGGTGCAAAGGAAATGAAAAAGGCTTACAAGGATGTCAAACTTGATCAGATTGACGATTTACAGGACCAACTGGAGGACATGATGGAGGACGCCAATGAGGTACAAGAGGCCCTGAGCCGCAGCTATTGCACTCCGGAGATAGATGAGGATGATCTTGAAGCAGAGCTGGAAGCACTGGGTGATGAGCTGCTGCTGGATGATGACAGCTCCTACCTGGATGAGGCCTCGGCTGCCCCCTCTATCCCTGAGGGAATCCCCAGTGACAGCAAGACAAACAAGGATGGCGTTTTGGTGGACGAGTTTGGCCTGCCACAGATTCCTGCCTCATAAACAAGGAATGGATTAAAACAACTGCACTTCAACTGAAAACACTTTTTATATGTAGAGTAACATTTATACATGCAAAacatttgacctgaggacacgAGGATTTTAATGCTATCGTGGTGTTGGGTTGTGTATCGTTACCACTACCGTGCTAGCTTGTGGCCTTGTAACATactgaacctttttttttaaaaacattattcCTGTCTAACATTTGTCTGAATTGTCAGTCTCGTCCATCTCCAGTATTACCAAGCTTAATTTATTTGTCTTATTTGTATTCTAGTTTTGTGTGTTGTCATTACTAGTGTTCTGAGTTCTCAAAAGTGGAGAGGGTTCCCACTGAGCCTGTTCAAATATCTGCAGGTTATTTGAAAcatgcaaaaataaatgttttaatgtaa

Function

symbol description
chmp5 Enables cadherin binding activity. Involved in several processes, including cellular response to muramyl dipeptide; midbody abscission; and regulation of cell cycle process. Located in cytosol.

NR:

description
PREDICTED: charged multivesicular body protein 5

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K12198 CHMP5, VPS60; charged multivesicular body protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816465.1 True 1198 mRNA 0.44 8 19519536 19524482

Neighbor

gene id symbol gene type direction distance location
bag1 bag1,LOC102796959 coding downstream 2962 19513543 ~ 19516574 (-)
myom1a LOC103361565 coding downstream 9970 19486691 ~ 19509566 (-)
lpin2 LOC103361566 coding downstream 33580 19465952 ~ 19485956 (-)
yes1 LOC104926159,LOC103361570,LOC101479012 coding downstream 264001 19226837 ~ 19255535 (-)
colec12 LOC104926162,LOC103361572 coding downstream 303286 19182182 ~ 19216250 (-)
oprk1 LOC104917759,LOC105937811,LOC103479830,LOC108232774 coding upstream 3681 19528163 ~ 19532230 (-)
atp6v1h atp6v1h coding upstream 18368 19542850 ~ 19573287 (-)
tcea1 tcea1 coding upstream 68985 19593467 ~ 19601472 (-)
LOC120567744 NA coding upstream 265143 19789625 ~ 19791903 (-)
LOC120567779 LOC101467836,LOC102791796,LOC104956506 coding upstream 358420 19882902 ~ 19916863 (-)
G116091 NA non-coding downstream 109260 19410049 ~ 19410276 (-)
G116082 NA non-coding downstream 295456 19223828 ~ 19224080 (-)
G116085 NA non-coding downstream 296047 19223263 ~ 19223489 (-)
G116080 NA non-coding downstream 297893 19220715 ~ 19221643 (-)
G116050 NA non-coding downstream 351006 19166515 ~ 19168530 (-)
G116182 NA non-coding upstream 82183 19606665 ~ 19617420 (-)
LOC120568771 NA non-coding upstream 107015 19631497 ~ 19632872 (-)
G116180 vim,LOC107098299 non-coding upstream 115044 19639526 ~ 19640657 (-)
G116181 NA non-coding upstream 120840 19645322 ~ 19648123 (-)
G116268 NA non-coding upstream 154707 19679189 ~ 19679430 (-)
G116138 NA other downstream 54156 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 296810 19221791 ~ 19222726 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other downstream 584045 18931974 ~ 18935491 (-)
G115941 NA other downstream 673259 18844905 ~ 18846277 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other downstream 798949 18703064 ~ 18720587 (-)
xcr1b.1 NA other upstream 268860 19793342 ~ 19795759 (-)
tmie tmie,LOC102776014 other upstream 1460319 20984801 ~ 20995567 (-)
higd1a higd1a other upstream 1483566 21008048 ~ 21010576 (-)
G116969 NA other upstream 2737516 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 3821236 23345718 ~ 23361580 (-)

Expression


Co-expression Network