LOC120568782 (pcdh8)


Basic Information

Item Value
gene id LOC120568782
gene name pcdh8
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 13274162 ~ 13278429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816486.1
TGGGTGCCAAGTTTCTCCGCACAGTCCAGGAATCTCTAAACAGGGTTTAGAGGTCTTTCAGAAGTCCCTCTTTCCCCCCATCTCAAAGCCCGGATTGGCCACAGTGCGGCTCATTTGCATGGCTCGCCGTATAAACCCTCCTGCAGACACTGCAGCCCTCTTGCGCTGAAAGAGCAGCACACCtccagtagagagagagagagagagagagagagagggagagagagcggagcGCATCCAGAGTGCGCATTGAAAGACATATGGAATATTTATTACTGGctttataaaaagaataaacaacCCCGGAGAGTCGAGGAGAGCGGGGAAGGAATAGCTTTTTGTAGGTTCGttttgttttaactttaaaTCGGACTTAGTGCGGGCAGTTTGCTGAATTTCAGATTATTTCGGATTGAAGGTGTCAAGATGGGAGAAATAGGGTGGAACGGGCTGTTGGTGCTAGCGTGCGTCTCTTGGGCAAGCCTGGCTGCTGTCACACAAGGAAAGACGGTGAAATATCAGACATTCGAGGAAGACGCACCAGGGACAGTGATTGGAAACTTGGCCAAGGACATCTCCTCCACTGCCTCTTCCTCGGGGGGCTCCAGGACCAATTTCAGGATGATGAAACAGTTCAACTCCTCTTTCATCCGGCTGAGGGAGAGCGACGGGCAGCTGACCATCGGAGAGAGGATAGACAGGGAGCGGACCTGCAAACACATGCTGCAATGCCTCATCGCTTTTGACGTGGTCAGCTTCTCCAAAGAGCAGTTCAAACTCATCCACGTCGAGGTGGAGGTCAAGGACATCAACGACAACTCCCCCGAGTTCCCCCGGAAAGAGTCGAGTCTGGAGATCTCCGAGAACACAGCGGTGGGCACGCGGATACCGCTGGACTTTGCCGTGGATGAGGATGTTGGGGCGAACTACATCCAAAGCTACCAGATCTCCGTCAACAGCCACTTTTCAATCGACGTGCTCAGCAGGGCCGACGGGGTTAAATATGCGGAGCTGGTGCTCATGAAGGAGCTGGACCGGGAGACGCAGGCTTCTTACGCGCTGGAGCTGGTCGCTATGGACGGTGGCAACCCGTCCCGCACCGGAACAACGCGCATCAACGTCAAGGTGAAAGACTATAACGACAACAGCCCGGTGTTCGACAGGAACAGCTTCTCCGTGGACCTGCCCGAGGACGCACCGGTGGGCTTTCTCTTGCTGGACCTGAACGCGGAGGATCCAGACGAGGGGCTGAACGGCGAGGTGGTGTACGGCTTCGGTAACCAGGTGCCCACAGAAATACGGCAACTCTTCAGAGTGGACAGGAAGACCGGACGGCTCACCGTCGAGAGCGCGATTGACTTTGAAAGTAAGAACACGTACGAGTTTGACGTTCAGGCAACCGACCTGGGTCCGAACCCGAGCCCGGCCATCTGCAAAATTGTAGTGCAGGTGCAGGATGTTAACGACAACGCACCGGAGATCTCCATCACTCCTATGACGTCCATAACGGCGGGGATAGCGTACATTACCGAGGCGGCGGCCAGAGAGAGTTTCGTGGCTCTGGTCAGCACCTCGGACAGAGACTCCGGCGCTAACGGGCAGGTGCACTGCACGCTCTACGGACACGACCACTTTAGACTGCAGCAGGCGTACGAGGACAGCTTCATGATTGTGAGTACCAGCCCGTTAGACCGGGAGAAAATCCCCGAATATAACCTCACAGTAGTGGCGGAGGATCTGGGCTCCCCTCCCTTCAGGACCATCACTCAGTACACAATCAGACTGACTGACGAGAACGACAACGCTCCGGTGTTCAGTAAACCGGTGTATGAAGTGGCCGTGGTGGAGAACAACGCACCTGGCGCATACATCACCACTGTGGTGGCGCGGGACATGGACATGGGGTCAAACGGGAAGGTCAGCTACAAACTGGCAGACACATATTTCATGGGCTCCCCCATTTCCACCTTCGTGTCGCTGGACCCCGCCAGCGGGTCGCTTTACGCGCTCCGGAGCTTCAACTACGAGATGATGAAACAGCTGGAGCTCCGTATCACGGCCAGCGACGGCGGCTCCCCGCCTCTGTCCGGCAGCGCTAACGTCTACGTGAGGATAGTGGACCAGAATGATAACACACCGGTCATCACTCAGCCGCCTCTCAATAACGGCTCCGCTGAAGTCCTCCTGCCCCGGGACGCACCGAGCGGCTACGTCATCACCCGGGTGGAAGCGCGGGATGCGGACGAGGGCGTGAACGCAGAGGTGTCCTACGGGCTGGCCACCGGTGAGCCCTCCGTGTTCTCTGTTAACAAAGCCACGGGGGAGATCTACCTCAACCAGGTGCTCAGCCATGACGTGGACGAAACTCTGAGCGTGACCGTGACGGTGAGCGACAACGGGAGGCCCGCGCTCACCTCCACCGCCACGCTCCACTTCCTCATCATCGCGGGCTCCCCGCCGAGCGACAGGACAGTGTACCAGTCGGGCGGCGGGGACGAGGTGCACGCGCAGTGGGACCTGTCCGTGGTGATTATCGTTGTCCTCGCGGGGAGCTGCACGCTCCTGCTGCTCGCCATCATCCTCATCGCCACCACCTGCAACCGGCGCAAGCGGGACAAAAGCGGAGAAGACAGCGACTCGTACGGGGAGAAGGGCACGCTCGAGCGGGGCAGGAACCACGTGGGGGACAACCCGCTTCTGCCACTCCACGGGGCCGGGGGAGGAGCGGGCTTTGAGGGACACTCCTATAGCAGCCAGCCCGGTGGGTTCACCTCGGCTCACCCCGGGGGCAGCGACATGTGCTCGGCCTCAGAGGACGGCAGCGAAGTGCCCTGTGTGTATGACTCAGACAGCAACAGTAAGCCTAGAGGGAACAAACACGAGGGCTACTCCACTCTGCCCGGCTATGGGAACGCCAAAGAGGCTGTGAGGCCCATCACTATCTGGAAGGGGAACTCTTACACCACCATCTCTGCCAGGGACCCGGCCTTCAGTGGCAAAGACAGTGGCAAGGGAGACAGTGACTTCAatgacagtgacagtgatgtcAGTGGGGACACTGGCCTGAAGAAAGATGGGGCAGTGGTTCCTCCCATGGGTGGCCAAAATGCTCTGTGGGCTTGCACCAGTGAATGTAAGGTCCTGGGTCACTCAGATCGCTGCTGGAGCCCCTCGGCAGTAAGAGCCAACGCAGCGCCCTCTCCAGCCCCCACCCTCTCCTCTTTCAGCAGCCTCTCCAAGACAGCCTCCCTGCCCCGGGACCCCCACCGCCGGGACAACTACTACCAGGCGCACATCCCCAAAACCGTGGGTCTACAGAGCGTGTACGAGAAGGTGCTGCACAAAGAGTACGACTACGTTCTGGTCACCCCATCCAGGCCTGTGCGGGTGCAGGAGATCAGTGATATAACCATCCCTGTTTACACCCCCACCCCAACACACTGCCCCAACAATGACGTCTAAAACAGACattgcacaaacacaaacacacacacacacacacacacacacacacacacacacacaccacacacacaaatctaagCTCACTCTCAAAGAAATGTATAGTGTATTCAAAGTTTTAATTTATGATCCATTGACAATGAGAATACTGTAACGTTTTGAAGTTATTCGTTGCTGTGGAGAGTGCATATATAAGTTTATATCCTAATATTcgtgtgtttctgttttattgtaaaAGCCACATTTAATGGccattcaatcaatcaattgatacattttgttttgttgacatgaagtgTATCATATGCAAGTTTTGTACATGcagagattttatttttttataaaagtaatAATTAAGCAAAGATATGTACATATAAATTGTAATTATTGATCTTTAAGCACGACTATTTAAAATGGCCCCAGAAACTGTGCTGTTGGATGGCCGGTGACCCACAATGTATCAAGTTGATAACGATGTATGATGTTATTTGAATGCAATAATAAGTAATTgtacagaatgttttttttatcatcacaaTATTCTGAGAGAAAATAAACTTTGAAATAATGTTCTGAACATGG

Function

symbol description
pcdh8 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including germ ring; margin; mesoderm; presumptive mesoderm; and retina. Orthologous to human PCDH8 (protocadherin 8).

NR:

description
PREDICTED: protocadherin-8

GO: NA

KEGG:

id description
K16499 PCDHD2; protocadherin delta 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816486.1 True 4044 mRNA 0.54 3 13274162 13278429

Neighbor

gene id symbol gene type direction distance location
LOC120568679 NA coding upstream 50308 13213316 ~ 13223854 (+)
trnae-cuc_17 NA coding upstream 55952 13218139 ~ 13218210 (+)
mcm6 mcm6,LOC106569474 coding upstream 90955 13176825 ~ 13183207 (+)
LOC120569132 LOC104948641,LOC103362219,LOC104938220,LOC103396234 coding upstream 107331 13163839 ~ 13166831 (+)
si:ch211-227n13.3 NA coding upstream 110644 13159016 ~ 13163518 (+)
LOC120568688 lect1 coding downstream 647 13279076 ~ 13286178 (+)
LOC120567765 NA coding downstream 110792 13389221 ~ 13392603 (+)
LOC120568628 LOC103354350,LOC103478943,LOC107086843,LOC100704451,LOC101473770 coding downstream 116059 13394488 ~ 13410455 (+)
LOC120568788 gorasp2,LOC103354349,LOC101074307,LOC105930246,LOC106513812 coding downstream 133524 13411953 ~ 13420965 (+)
LOC120568709 LOC103354345,LOC100697448 coding downstream 209032 13487461 ~ 13554660 (+)
LOC120568783 NA non-coding upstream 19577 13250751 ~ 13254585 (+)
G114037 NA non-coding upstream 67139 13204825 ~ 13207023 (+)
G114035 NA non-coding upstream 73416 13199768 ~ 13200746 (+)
G114033 NA non-coding upstream 75428 13196261 ~ 13198734 (+)
G114008 LOC104953400 non-coding upstream 120568 13152099 ~ 13153594 (+)
G114055 NA non-coding downstream 8221 13286650 ~ 13287219 (+)
G114032 NA non-coding downstream 9764 13288193 ~ 13289003 (+)
G114063 NA non-coding downstream 75825 13354254 ~ 13356050 (+)
G114094 NA non-coding downstream 191082 13469511 ~ 13472357 (+)
G114095 NA non-coding downstream 194585 13473014 ~ 13473251 (+)
si:ch73-71c20.5 NA other upstream 87798 13183284 ~ 13186364 (+)
ndufb3 ndufb3 other upstream 148699 13123030 ~ 13125463 (+)
rpl37a rpl37a,RPL37A other upstream 156806 13114596 ~ 13117356 (+)
col6a1 col6a1 other upstream 199568 13010575 ~ 13074594 (+)
LOC120569010 NA other upstream 313813 12952548 ~ 12960349 (+)
LOC120568245 LOC103365337,LOC101481118,LOC102206401,LOC102290843 other downstream 1008721 14287150 ~ 14295993 (+)
rgs18 rgs18,LOC106918816,LOC103139989,LOC103479038 other downstream 1707348 14985777 ~ 14993083 (+)
ro60 trove2 other downstream 1735314 15013743 ~ 15026208 (+)
G114789 NA other downstream 1873367 15151796 ~ 15157199 (+)
LOC120568540 LOC108238308,LOC100706341,LOC103359463,LOC106530177,LOC102798013,LOC101474556,LOC102303803 other downstream 2060128 15338557 ~ 15368780 (+)

Expression


Co-expression Network