vps4b (vps4b)


Basic Information

Item Value
gene id vps4b
gene name vps4b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 23422716 ~ 23433374 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816495.1
TGTGTCACTGAGGGAGTGATAAGCAAACAGGAACTTGTTGTTCGGTGACATACGGCTGGGTAAACGAAACAAGACTGGCGGGGATCACGGGTCCtatctgttgtgtgtttttattctcaCAGGACTCCGCATGGAGCCAACAAATCTACAGAAAGCTATTGCCATAGCACAGAAGGCTTCACAGGAAGACCAGGCTGGGAACTATGAGGAGGCCATCCGCTCCTACCAACATGCTGTCAAGTACTTTCTGCACATTATAAAACGTGAACCCCAGGGTAAAGATGGCAACCAGAAGATAAGAGATACATGTAAACAGTACCTGGACAGAGCGGAAGAACTACAGGAGTACCTAGTGAATAAAGAGAAAGCCATTGATCTTGCCAGCAAGGCGGCTCAGGAGGATAAAGCTCAGAAATACGAGGAGGCTCTACGTCTTTACCAGGCTGCtgttcagtacttcctccatgTGGTGAAATATGAAGCCCAGAGTGACAAAGCTAAACAGAGCATCCGGGCAAAATGTGCAGAATATTTGGACAGAGCAGAGAAGTTGAAGGAGTAtttaaagaagaaagaaagcgcTCCTCCCGCGAAGCCTGTCAAAGAGTCACAGTCTGATGACAAAGGGAATGAAAGTGATGAAGGTGATGATCCAGAGAAAAAGAAGTTCCAAAATCAACTCTCAGGTGCAATTGTTATGGAGAAACCAAACATCAAATGGAATGATGTTGCTGGTTTAGAGGGAGCCAAGGAGGCACTAAAAGAAGCTGTTATTCTTCCGATCAAATTTCCCCACCTTTTCACAGGAAAGAGAACTCCATGGAGAGGGATCTTGCTCTTTGGACCACCAGGTACAGGAAAGTCTTATCTGGCTAAAGCTGTTGCTACAGAAGCAAATAACTCAACCTTCTTCTCCATCTCCTCTTCTGACCTCGTCTCCAAATGGCTGGGAGAGAGTGAAAAGTTGGTGAAGAATCTTTTTACCCTTGCAAGGGAGCACAAGCCTTCTATCATCTTCATTGATGAGATCGACTCCCTGTGTGGCTCAAGAAGTGAGAACGAGAGTGAGGCTGCTCGGCGTATTAAGACAGAGTTCCTGGTTCAGATGCAGGGTGTGGGAAATGACAATGAGGGAGTGCTGGTACTTGGGGCAACAAATATCCCATGGACCCTAGACTCAGCCATCAGAAGAAGATTTGAGAAGAGGATCTACATCCCGCTGCCTGAAGAGCACGCACGCTCCTTCATGTTCAAGCTCCATCTAGGCGCGACCCCCACAAGTCTCAGTGACACTGACTTTGTCACTCTGGGCAAGAAGACAGATGGATACTCGGGAGCAGATATCAGCATCATTGTCCGAGACGCTCTAATGCAGCCTGTTAGAAAGGTCCAGTCAGCAACCCACTTCAAAAAGGTACGTGGTGAATCAAGAACCGACCCCAACACTCTTGTAGATGACCTATTGACTCCTTGCTCTCCTGGCGATCCCAATGCGATTGAAATGACATGGATGGAGGTACCTGGGGAGAAGCTATTGGAACCTGTAGTATGCATGtCTGACATGATGAGGTCTCTGGCCAACACAAAGCCAACAGTCAATGATCAAGATCTGGTCAAACTGAAAAAATTCACAAATGACTTTGGACAGGAAGGCTAGGTGGGATGATTGAGCCAAAGCAAAGGAATTTTGATTGTCTGTCTTTACTGTccttgtcccttttttttctttttttactctcTCATCATAACCCTTCACCAGGCTTTGTGGTTTATCATGAGTGGACAAGATCACTGCGCTGTTGTTTTGCCAATTTGATAACCAAGCAAAGGGTGAAAGGACCTAGTTTTATTCGAAAAATAACCATTGTCCAAAGATTAAAAACTTCCCATCTGCAGCTGACCTGATAAAAGAATCAATGACATAAATAATTTAGAGTGTTGTTTGACTTGTGCACTATAGAATAAAAGGTATTTATCAGCAGAATACCCTAGCAACGAAATACACAACAATTAATTGCAAATAAGACTTTTGAAGTCAAgataatttattttaagttaaagcaacactatgtaacttttcccgcttcggtccccctacaggttgtctcattggaactacagcttgcGCTACCcgccgcttcggtcccccttcAGGTTGtctccatagactgtatattaatattaagtctatggttGTCTGATTGGAACTACAGCTAGCGCTACAcgccgcttcggtccccctacaggttgtttcattggaactacagctgcagctaaaagttacatagtgttgctttaagactAGCTCTTGTCTCCTTATTTTCCAGCCAGAATACATCTCACTAGACTAAAATATACCGCTTGCATATTCTCCATTTtatgttaagaaaaaaacaagcattttatAGTGTATAATGTACTTTGTGGAATATAAAAAGCTTGGGCTGGGGGAGTGAAGCAGGGCATGAGTTGATAGGATTTGTTTGGTGAAATatgtcatttttgtctcaagGTGGTGGACATttaagagctttgagacagaGATATTCAGGATGAGAGCTACATTAGACCCTGTGGAAATTTTGGATTGTTTATCCAGTTTCCTAACAAGGAACAATTGTATTTGTTTACTCATTTGTCATTTGAATTAAACTCGGCTACAAGGGTGGATCACCAATGGTGCCAGACCAGCATTATTTTACAATTCTTCAAGGACTCAATAGCTTTTAATTGCTTTGTCACTCAGctcatggttttttttttttctcacaaccTACTGTACATATTTTTCTTTACTATCCACAGGCTTTGCTGGTTATCTTTAatataaactgtaaaaaaaaaactaagccTTATGTTATGATAAAGTCATTATAAATTTTGATAAAACAAGACCCAGTTGGACACGGATGGCTCAGGTGGAGAGATCATCTTCTTGTATACTTAACAATATAGGAGTGCATCTCAAAGCATGAACTCTATGTTGCCATGATTGGCCGTGTGCACCATGTGCCTTCTAGAAAAGCTGCAAGATTcatttttattggtttatttctAAATTGGTCGCACTGCTTATATATCCAGTGCTTTGTCACTACAACTAAAATGTATAATTCATGTAAGCTCTTTCAGAGATTGTATACAACTGTGCTCTTTTGCTCCTAAGGTGTGAAAACTATCTCTTTTGAGTTTTAAGAGtcttattttactgtaaatgtctATACATATAGTCAACTCcagctttttctttgtgtggTCACCCATGcataacattttctgtttttgtttccacAATGTAAATAAAAGTTAAAGCTACGTCAAGAAAA
>XM_039816496.1
AGTATCGACTTTTCAATGCGGAAGTTCCCTCCTCGATCTGACTCCGGAACGATCTTAGAAACGAAAACAAGCGTCATAAAAACCCCGATTGTGGAGTTAACAGACAACTTGTCTGGTTAAATTCTAAAGCATAGTGTTTAAAGGCTGTTTCGTTACGGCGGTGTTATATTCGTTTCGATTATTGGGCAAGTGATCAGCCATTATGGCTACCAACAATAATTTACAGAAAGCCATTGATCTTGCCAGCAAGGCGGCTCAGGAGGATAAAGCTCAGAAATACGAGGAGGCTCTACGTCTTTACCAGGCTGCtgttcagtacttcctccatgTGGTGAAATATGAAGCCCAGAGTGACAAAGCTAAACAGAGCATCCGGGCAAAATGTGCAGAATATTTGGACAGAGCAGAGAAGTTGAAGGAGTAtttaaagaagaaagaaagcgcTCCTCCCGCGAAGCCTGTCAAAGAGTCACAGTCTGATGACAAAGGGAATGAAAGTGATGAAGGTGATGATCCAGAGAAAAAGAAGTTCCAAAATCAACTCTCAGGTGCAATTGTTATGGAGAAACCAAACATCAAATGGAATGATGTTGCTGGTTTAGAGGGAGCCAAGGAGGCACTAAAAGAAGCTGTTATTCTTCCGATCAAATTTCCCCACCTTTTCACAGGAAAGAGAACTCCATGGAGAGGGATCTTGCTCTTTGGACCACCAGGTACAGGAAAGTCTTATCTGGCTAAAGCTGTTGCTACAGAAGCAAATAACTCAACCTTCTTCTCCATCTCCTCTTCTGACCTCGTCTCCAAATGGCTGGGAGAGAGTGAAAAGTTGGTGAAGAATCTTTTTACCCTTGCAAGGGAGCACAAGCCTTCTATCATCTTCATTGATGAGATCGACTCCCTGTGTGGCTCAAGAAGTGAGAACGAGAGTGAGGCTGCTCGGCGTATTAAGACAGAGTTCCTGGTTCAGATGCAGGGTGTGGGAAATGACAATGAGGGAGTGCTGGTACTTGGGGCAACAAATATCCCATGGACCCTAGACTCAGCCATCAGAAGAAGATTTGAGAAGAGGATCTACATCCCGCTGCCTGAAGAGCACGCACGCTCCTTCATGTTCAAGCTCCATCTAGGCGCGACCCCCACAAGTCTCAGTGACACTGACTTTGTCACTCTGGGCAAGAAGACAGATGGATACTCGGGAGCAGATATCAGCATCATTGTCCGAGACGCTCTAATGCAGCCTGTTAGAAAGGTCCAGTCAGCAACCCACTTCAAAAAGGTACGTGGTGAATCAAGAACCGACCCCAACACTCTTGTAGATGACCTATTGACTCCTTGCTCTCCTGGCGATCCCAATGCGATTGAAATGACATGGATGGAGGTACCTGGGGAGAAGCTATTGGAACCTGTAGTATGCATGtCTGACATGATGAGGTCTCTGGCCAACACAAAGCCAACAGTCAATGATCAAGATCTGGTCAAACTGAAAAAATTCACAAATGACTTTGGACAGGAAGGCTAGGTGGGATGATTGAGCCAAAGCAAAGGAATTTTGATTGTCTGTCTTTACTGTccttgtcccttttttttctttttttactctcTCATCATAACCCTTCACCAGGCTTTGTGGTTTATCATGAGTGGACAAGATCACTGCGCTGTTGTTTTGCCAATTTGATAACCAAGCAAAGGGTGAAAGGACCTAGTTTTATTCGAAAAATAACCATTGTCCAAAGATTAAAAACTTCCCATCTGCAGCTGACCTGATAAAAGAATCAATGACATAAATAATTTAGAGTGTTGTTTGACTTGTGCACTATAGAATAAAAGGTATTTATCAGCAGAATACCCTAGCAACGAAATACACAACAATTAATTGCAAATAAGACTTTTGAAGTCAAgataatttattttaagttaaagcaacactatgtaacttttcccgcttcggtccccctacaggttgtctcattggaactacagcttgcGCTACCcgccgcttcggtcccccttcAGGTTGtctccatagactgtatattaatattaagtctatggttGTCTGATTGGAACTACAGCTAGCGCTACAcgccgcttcggtccccctacaggttgtttcattggaactacagctgcagctaaaagttacatagtgttgctttaagactAGCTCTTGTCTCCTTATTTTCCAGCCAGAATACATCTCACTAGACTAAAATATACCGCTTGCATATTCTCCATTTtatgttaagaaaaaaacaagcattttatAGTGTATAATGTACTTTGTGGAATATAAAAAGCTTGGGCTGGGGGAGTGAAGCAGGGCATGAGTTGATAGGATTTGTTTGGTGAAATatgtcatttttgtctcaagGTGGTGGACATttaagagctttgagacagaGATATTCAGGATGAGAGCTACATTAGACCCTGTGGAAATTTTGGATTGTTTATCCAGTTTCCTAACAAGGAACAATTGTATTTGTTTACTCATTTGTCATTTGAATTAAACTCGGCTACAAGGGTGGATCACCAATGGTGCCAGACCAGCATTATTTTACAATTCTTCAAGGACTCAATAGCTTTTAATTGCTTTGTCACTCAGctcatggttttttttttttctcacaaccTACTGTACATATTTTTCTTTACTATCCACAGGCTTTGCTGGTTATCTTTAatataaactgtaaaaaaaaaactaagccTTATGTTATGATAAAGTCATTATAAATTTTGATAAAACAAGACCCAGTTGGACACGGATGGCTCAGGTGGAGAGATCATCTTCTTGTATACTTAACAATATAGGAGTGCATCTCAAAGCATGAACTCTATGTTGCCATGATTGGCCGTGTGCACCATGTGCCTTCTAGAAAAGCTGCAAGATTcatttttattggtttatttctAAATTGGTCGCACTGCTTATATATCCAGTGCTTTGTCACTACAACTAAAATGTATAATTCATGTAAGCTCTTTCAGAGATTGTATACAACTGTGCTCTTTTGCTCCTAAGGTGTGAAAACTATCTCTTTTGAGTTTTAAGAGtcttattttactgtaaatgtctATACATATAGTCAACTCcagctttttctttgtgtggTCACCCATGcataacattttctgtttttgtttccacAATGTAAATAAAAGTTAAAGCTACGTCAAGAAAA

Function

symbol description
vps4b Predicted to enable ATP hydrolysis activity and microtubule-severing ATPase activity. Acts upstream of or within odontogenesis. Predicted to be located in late endosome membrane. Predicted to be active in nucleus. Is expressed in ceratobranchial 5 primary tooth; pharyngeal arch 3-7; and pharyngeal pouch. Orthologous to human VPS4B (vacuolar protein sorting 4 homolog B).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 4B isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K12196 VPS4; vacuolar protein-sorting-associated protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816495.1 True 3326 mRNA 0.42 13 23422716 23433374
XM_039816496.1 False 3188 mRNA 0.41 11 23425370 23433374

Neighbor

gene id symbol gene type direction distance location
LOC120569134 NA coding upstream 78821 23325302 ~ 23343895 (+)
LOC120568373 znf521 coding upstream 119927 23212498 ~ 23302789 (+)
ss18 ss18 coding upstream 233145 23177741 ~ 23189571 (+)
LOC120568942 kctd1,LOC103479566,LOC103373355,LOC106534090,LOC108239680 coding upstream 275299 23134256 ~ 23147417 (+)
aqp4 aqp4 coding upstream 293764 23122523 ~ 23128952 (+)
bcl2b bcl2 coding downstream 8217 23441591 ~ 23467811 (+)
glula LOC103366706,LOC100534445,LOC108239682 coding downstream 382666 23816040 ~ 23820441 (+)
trnaw-cca_13 NA coding downstream 434880 23868254 ~ 23868325 (+)
gigyf2 gigyf2 coding downstream 436677 23870051 ~ 23890968 (+)
snorc NA coding downstream 457770 23891144 ~ 23896911 (+)
G117190 NA non-coding upstream 44200 23377133 ~ 23378516 (+)
G117187 NA non-coding upstream 48517 23373710 ~ 23374199 (+)
G117128 NA non-coding upstream 504610 22917876 ~ 22918106 (+)
G117082 dsp non-coding upstream 668226 22752252 ~ 22754490 (+)
G117077 NA non-coding upstream 674984 22747120 ~ 22747732 (+)
G117219 NA non-coding downstream 12977 23446351 ~ 23462300 (+)
G117220 NA non-coding downstream 35246 23468620 ~ 23519769 (+)
G117221 LOC101467149 non-coding downstream 39173 23472547 ~ 23473684 (+)
G117228 NA non-coding downstream 59732 23493106 ~ 23566317 (+)
G117297 LOC104918287,LOC103479586,LOC107686770,LOC108443834,LOC107083372,LOC106929027,LOC108239658 non-coding downstream 309110 23742484 ~ 23745977 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other upstream 741423 22641510 ~ 22681293 (+)
LOC120567968 NA other upstream 802585 22608049 ~ 22620131 (+)
LOC120568354 NA other upstream 1525325 21870953 ~ 21897391 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 2507394 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 3047083 20373227 ~ 20375633 (+)
kdsr kdsr,LOC102792240 other downstream 251 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 159358 23592732 ~ 23685804 (+)
G117319 LOC101487892,LOC104941256 other downstream 417505 23850879 ~ 23855157 (+)
G117353 LOC103366712 other downstream 472496 23905870 ~ 23908401 (+)
hes6 LOC104918282,LOC104941260,LOC103366710 other downstream 479290 23912664 ~ 23914498 (+)

Expression


Co-expression Network