lrrcc1 (lrrcc1)


Basic Information

Item Value
gene id lrrcc1
gene name lrrcc1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18803651 ~ 18820386 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816504.1
CCGATAGAAGCGGTTAGTTCAACCCTTCATCTCGATAGAGGAGaggctaaaaacaaaaacaaatgttttaacCAACTCACGAATGCTGCGTTGGTTATTAGAAAATACACCACAACACTTGTTGGCTGTTCTAGCTTTTGTAACTGTTCTTTTTAAACTGCTCGGTATGAATTTGCCTCCTGAGCTCGTTTGCTAGTAAACTTTTGCTACTCTGCTACGGTTTAGCTACGTTACGCGGTCTACAGTACACATGGGTAAATAAAGGCTAACACTAGCTGGTTGCATGTCGTCGTTATGGGAGACAAGGAGCTGAGTCTTATTGACAAGAATATAACAAGTTTGCTAGATGTCCCCCTGAGTCCCACTGTAACATCACTCAGTCTGCACTGCAATCACATCCCAGGGATCGAGGGCCTGACCTCAGCTTGGCACCTGCGGCACTTAGACCTTTCCTCCAATTGCATTTCTAAGATTGAGGGTCTAAGTTCCCTCACTTCCCTAAGGACTTTAAATTTATCATGTAACTTAATCACCAAGGTTGAAGGGCTGAATGGCCTTGTGAACCTAACAAGATTAAACTTGTCCTACAATCAGATAAACAACCTCACTGGCTTGTTGTATCTTCATGGCGCAGGATACAAGCTGAAGCACCTtagtctccatagcaaccacctGGACAACATTGATCATCTCCTGCAGTGCCTGCTGGGATTGCAAAGTTTAAGAGAGGTCACTTTGAACCAGTATGGCAGGGACAACCCTGTGTGTAGGTCACCAGGTTACAGGGAAATTGTTATTCAGTCGTTGCCACAGATATCTGCTCTGGATGGTCTGGACCGGCATGGAAATCCATCACAGCTAGGTCTAGGGAGTCCATGTGATATCCCTGGTCTGGAGGACTATGTGGACCTCCTGCTGTCCTCGGATACCAGTCACAATGAAGCGGTAAGAGAGGATGTCACTCTCACTACACCCCGCATCGATGAGGTGCTGACCCAGTTTCGTCAGCGGATTGCCTCTGAAGCAATCACAGATCCAGTTGCACAGATTCACTCTACGGTGTCCGATCCAGCAGACCCAGTTAATGAACAACGCATCAGGAAACTGGAGCACCAGGTGTCCCAGCTTATCCAGAAGGCCCCTGCGGTTGACAAATCCAGTAGCTCTACTCATTCTGGGGTCACAGTACAGAAAGCCAAGAGGGACACAGATCGCACATCAGAGAGCGAGTGTGACAGCGGGAAGGAAAACAGGAGGCATACCGGGATCCCCAAACACCGTAACAGCATAACACAGAGGACGACCCCCAAGGGAACCAGGGGCCGGAGATCAGACagCGATCAGGAGAATCGTAAACAGAGGAGTTCAAAGTCTGCTGAGGGGCTCAGGAGGAAGTCTGGCGCTGCAGGGGATAAAGACTTAAGAAGGGGACCTGTGACAGCTGCTAAGGCCTCAGGCGACGTGAAAGCCAAGTCCACTGGGGAGGAGGAAACCTACAGGACTATTGTGGAAGAGCGTGACCAGGAAAGGGAGAGGCGTTGGAAGGCtgagcaggctgtgaggaaacTAACAGAGGATCTAAAGTGCCTGCAGACAAAGGTCAGCGAGGAAAAAGACCTGCAAAGCATGGCCCTGCACACCACCGACAGAATGAAAgatttgttgctaaaggagcgATCGGGGCGCTCTGAACTGCAGACTCGTGTTGAGGAGCTGGAGGGCAGGTGTCAGTCCCTAACCCAGCAGCTGGAGCAGGCCCGCAGCGGTGAAGAGCAACACAAGACTGCACTGCGCAGACTGGAGGAAAGCATCTCCCATGGAGAGGCACTCAGGGCTCGCCAACAGGCTGAGGAGATGAAGCGGCACCAGGAGCTGGAGAACAAGGCAGCAGCTCTgaagagagaggcagacatCCAGAGAGCATCAGTGTGTCAGCACAAAGACAAACTGCAGCAGCTGCATGAACTGCTGGCATCCAGGGAACAAGAGCACAGaaaacAGCTGGAATTGCGGTTGCAGCCTGGCGGGGCAGATTTCTGTGAGGCAGTGGCGAAAGAGGTTGCATCAGTGGAACAGAGACACAGCCACAGGGAGGTGGAGCTGCAGGATAAACTGGCAGAGGGCAGGAAACAGTACGCTGCTCTGGAGGATGAGTTCCGCATGGCGCTAACCATCGAGGCTGCTCGCTTCTCTGAGGTAAAGGAGGCTTGTGATCAGATGACTGCAGAGCTGTGGAGGCTCAAGGAGACCCTCGGCCAGTCCCAGCAGAGGGAGAAGAAATCTGCCTCCCTGGTGCAGGAGCTCACAGCCATGGTCAAAGAACAGAAGAACCGCATCACTGATCTCATCAAAGCCAAGAGAGAAGCTGTCACTGATCTGAAGAGCCGTCTGCATTCCTTGGAAGCAGAGGTGGAGCAGGACCGGCGTCTTGGCCTCCAGCTCGAATTGCTCAAGAAAGACAAGGCGCGACTGTTGTCTCAGCTCACAGCTCAGGAGTCGGTGATAGACGGCCTCAGGGCAGAGAGGAGGATCTGGGGCCAGGAGCTCGCTCAGCAAGGAGCGTCCTTGGCTCAGGACCGTGGACGTCTGGAGGCCAGGATAGAAGTGTTGGGAGATGAGCTGGAGACTCATAAGAAACAGAACGACAGGGACAACGATGCCCTAAAAATCAAAACCAAAATCATTGAGGACCAGACAGAGACCATCCGCAAACTCAAAGAGGCCCTGCAGGAGCGCGATGATCAGATCCGGAGGCTGCACGAGGAGGCGGTTCAAGCTCAGAAGAGGTTCCAGCAGCAGCTGGAGGAGGAAACAGCTCGGCAGGGAGAGCTGAGGGAGCGGCTGGATCATCTGAGCTTGCGCAAGGAGGAGCTGAAACAGCAGCTGGAGGACAAGGAGGCGGAGCTTGAGGAGATCAAAAGAGTTTACAGtGATTCCAGTAAGAAGTGGCAAGCGAAGGCAGACCTGCTCACTCGGCTGGAGAACCAGGTGAAGCGCATGAAGGAGAACTTTGATTCCAAGGAACGCTTGCTGCTGGAAGAAAGAGATAAAGCAACAGAAGCACACAAAGCTGCAGTAGAGAAGTTACACTGTGTGGATGATGCATTTCGTCGACAGCTAGAGTCTGGCCAGGCTGCCCATCAGTCTGAGCTGCTTCGACTGGCGaatgagaagcagaaacagattGAACAAGCCAATCAGAAGgtatTTGAAGTGGAGGAGGAGATGCGTCAGCTCTTGGAGGAGACTGAAACTAACAAGAGAATAATGGAGGAGAAAATGAAACGTCTCACAAGTGTACTAAAAGACTTTTAAGTTTTAACACAAGGTTATAAGATGTTTGCAGCTATGGCAACGTATGAATTTAAATATTagaggaacattttatttttttaaatgaatcaatTTACTAGTTATTTTTTATAGATGTTTTTAATAagttattgttgtattttatagATGTTTATAATATAagttattgttgtattttagtgtATCATGATTTATATAATAAATTCTCTCGAGcata

Function

symbol description
lrrcc1 Predicted to be active in centrosome and cytoplasm. Orthologous to human LRRCC1 (leucine rich repeat and coiled-coil centrosomal protein 1).

NR:

description
leucine-rich repeat and coiled-coil domain-containing protein 1 isoform X1

GO: NA

KEGG:

id description
K16475 LRRCC1, CLERC; leucine-rich repeat and coiled-coil domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816504.1 True 3529 mRNA 0.50 19 18803651 18820386

Neighbor

gene id symbol gene type direction distance location
LOC120568945 LOC101485289,LOC100699127 coding upstream 3818 18756206 ~ 18799833 (+)
and2 LOC103353068 coding upstream 66461 18730728 ~ 18737190 (+)
apoda.1 LOC103353029,LOC104955147,LOC101484702,LOC102313692,LOC102209340 coding upstream 85140 18716358 ~ 18718511 (+)
LOC120568690 NA coding upstream 102424 18699482 ~ 18701227 (+)
LOC120568684 NA coding upstream 121232 18680600 ~ 18682419 (+)
e2f5 LOC100699665,LOC102779743 coding downstream 710 18821096 ~ 18833039 (+)
si:ch211-106h4.9 LOC103360860 coding downstream 47696 18868082 ~ 18920043 (+)
LOC120568750 NA coding downstream 148923 18969309 ~ 18984876 (+)
LOC120568749 NA coding downstream 168303 18988689 ~ 19013997 (+)
LOC120568752 NA coding downstream 247064 19067450 ~ 19104441 (+)
G115864 NA non-coding upstream 109005 18694391 ~ 18694646 (+)
G115863 NA non-coding upstream 109350 18693005 ~ 18694301 (+)
LOC120568663 NA non-coding upstream 111530 18689634 ~ 18692121 (+)
G115862 NA non-coding upstream 119186 18683714 ~ 18684465 (+)
G115856 samd7 non-coding upstream 153847 18648774 ~ 18649804 (+)
G115889 NA non-coding downstream 13157 18833543 ~ 18833742 (+)
G115921 NA non-coding downstream 22186 18842572 ~ 18842794 (+)
G115923 NA non-coding downstream 44740 18865126 ~ 18866134 (+)
G115931 NA non-coding downstream 102367 18922753 ~ 18923170 (+)
G115934 NA non-coding downstream 111540 18931926 ~ 18933912 (+)
LOC120568911 NA other upstream 78204 18720365 ~ 18725447 (+)
LOC120568691 NA other upstream 129511 18660429 ~ 18674140 (+)
skila skil,LOC102782637 other upstream 201388 18566633 ~ 18602263 (+)
G115729 NA other upstream 449307 18305149 ~ 18354344 (+)
LOC120567767 NA other upstream 773756 18027280 ~ 18029895 (+)
LOC120568770 NA other downstream 196653 19017039 ~ 19052242 (+)
emilin2a NA other downstream 626625 19447011 ~ 19465381 (+)
LOC120567833 gbg5 other downstream 1552841 20373227 ~ 20375633 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other downstream 2062231 20882617 ~ 20915322 (+)
LOC120568354 NA other downstream 3050567 21870953 ~ 21897391 (+)

Expression


Co-expression Network