ptf1a (ptf1a)


Basic Information

Item Value
gene id ptf1a
gene name ptf1a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8540381 ~ 8541623 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816509.1
CCGCGAGCAGCGAGCGCAGAGCAAACGCGTCGATATAAAAGAAAGAGACAGTGCGTCACATTGTTAGCGCGACAACGGGGACAGAGTTCGCAGCAGCAGACCAACATGGACAGCGTGCTGGACCCTTTCTCTGGACTCGACTCTTTCTCCTCCCCTCCTTATTTCGACGATGACGAGTTTTTCACCGACCAGTCCTCGAGAGACGGCCACTTGGACGCTGATGACTTTTTGGATGACGACGTCGACTTCCTCGCCAGCCATTTCCAAGACTATTACAGCAAAGACGGAGGCGACAGAGCAGCGCCCCGCGATGGGGACTACGACGCCGGCAACTTGTCCTTCTCCTCGTCGTCCTCCACTTTCTCCTACGGCACCCCGGACCTGTCCCCGCGTCACGGCGGGCCGTCGCTGAAGCGCAGGCGGCGGATGCGGTCCGACATGGAGATGCAGCACCTGAGACAGGCGGCCAACGTGCGGGAGCGGCGGAGGATGCAGTCCATCAACGACGCGTTCGAGGGTCTCCGCTCGCACATCCCGACCCTGCCCTACGAGAAGAGGCTGTCCAAAGTGGACACGCTGCGGCTCGCCATCGGCTACATCAACTTCCTCGCCGAGCTCGTGCAGTCCGATCTGCCCATCCGAAACTCCAGCAGCGAGACGCACGCGCAACCCAAGAAGGTCATTATCTGTCACAGAGGAACAAGGTCTCCCTCCCCCAGCGACCCGGACTACGGCCTGCCTCCCCTGGCCGGGCACTCTCTGTCCTGGTCGGATGAAAAGCAACTCCGGGAGCAGAACATCATCCGCACCGCCAAGGTGTGGACGCCGGAAGACCCCCGAAAACTGCACAGCAAACCGGGCCTCACAGACATTGAAAACGAGCCTCCTTTCGGCCTGGTGGCCTGAACAAAAACACCCGAGTCCTTGCGACTTGTCCTGTAAAAACGCACATTGTAAATGCGAAGACTATAAAGTTGATTGTGTTAATGTTAACGTGCGCTCGAAAGGcgcattgcaaaaaaaaaaaa

Function

symbol description
ptf1a Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Acts upstream of or within animal organ development and positive regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription regulator complex. Is expressed in several structures, including exocrine cell; intestinal bulb primordium; mid intestine; nervous system; and pancreatic system. Human ortholog(s) of this gene implicated in pancreatic agenesis. Orthologous to human PTF1A (pancreas associated transcription factor 1a).

NR:

description
PREDICTED: pancreas transcription factor 1 subunit alpha

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030154 cell differentiation biological_process
GO:0031016 pancreas development biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09073 PTF1A; pancreas-specific transcription factor 1a

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816509.1 True 1028 mRNA 0.58 2 8540381 8541623

Neighbor

gene id symbol gene type direction distance location
LOC120568256 NA coding upstream 11477 8520167 ~ 8528904 (+)
gad3 LOC104936027,LOC102300090,LOC102207797,LOC101470357,LOC101067284 coding upstream 166943 8348359 ~ 8373438 (+)
tmem68 tmem68 coding upstream 327789 8202224 ~ 8212592 (+)
blvra blvra coding upstream 364427 8164406 ~ 8175954 (+)
cdc14aa LOC104931871,LOC103370748,LOC100703039,LOC108411489 coding upstream 478281 8044004 ~ 8062100 (+)
LOC120568645 LOC101470953,LOC103363941,LOC107102700,LOC108246684 coding downstream 54763 8596386 ~ 8621676 (+)
fam110b fam110b,LOC102786931 coding downstream 123725 8665348 ~ 8704766 (+)
fam151a LOC107081349 coding downstream 176246 8717869 ~ 8736105 (+)
LOC120568389 kifap3,LOC103479309,LOC103146974,LOC104933922,LOC102235632,LOC100693718,LOC102779720,LOC101476805 coding downstream 329118 8870741 ~ 8920465 (+)
trnav-aac_1 NA coding downstream 330989 8872612 ~ 8872684 (+)
G112975 NA non-coding upstream 23645 8511090 ~ 8516736 (+)
LOC120568255 NA non-coding upstream 141054 8393511 ~ 8399327 (+)
G112966 LOC103366012,LOC103131821,LOC102230409 non-coding upstream 148890 8389386 ~ 8391491 (+)
G112949 NA non-coding upstream 198398 8341330 ~ 8341983 (+)
G112940 dnajb6,LOC104936025,LOC101470590,LOC102214955,LOC100708567,LOC102785555 non-coding upstream 210094 8326727 ~ 8330287 (+)
G112995 NA non-coding downstream 28843 8570466 ~ 8570735 (+)
G112999 NA non-coding downstream 86949 8628572 ~ 8654614 (+)
G113016 NA non-coding downstream 168694 8710317 ~ 8716540 (+)
G113042 NA non-coding downstream 215258 8756881 ~ 8765533 (+)
G113050 mrpl37 non-coding downstream 229524 8771147 ~ 8772044 (+)
LOC120568257 LOC102194642,LOC101465810,LOC102289180,LOC103366014,LOC103129983,LOC107384349,LOC103396642,LOC108246689 other upstream 29973 8406929 ~ 8510408 (+)
G112932 NA other upstream 227305 8309850 ~ 8313076 (+)
dnai4 NA other upstream 636459 7885498 ~ 7903922 (+)
G112670 NA other upstream 1504681 7035027 ~ 7035700 (+)
G112655 NA other upstream 1531224 7007242 ~ 7009157 (+)
atg10 atg10 other downstream 167038 8708661 ~ 8715271 (+)
LOC120568415 LOC103370799,LOC104931865,LOC101476899,LOC102794599,LOC102300092 other downstream 247586 8789209 ~ 8809459 (+)
LOC120568881 mfsd12,LOC104931866 other downstream 271274 8812897 ~ 8825811 (+)
pdca LOC103370803,LOC104933924,LOC101478313,LOC102200750,LOC100699795,LOC102301525 other downstream 354304 8895927 ~ 8902847 (+)
G113130 NA other downstream 402854 8944477 ~ 9002568 (+)

Expression


Co-expression Network