LOC120568804 (LOC101486461)


Basic Information

Item Value
gene id LOC120568804
gene name LOC101486461
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 34721550 ~ 34743010 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816510.1
ggaaacgtAACTTGCGGGGGAGAAGACAAACGGAATGCAGCCGTAGTCGAGGCTGTCTCTCACCACCAGTGTTTGTAATTTTTTCATCTGTGCTGTGTCTCAGTTATTTAGTTTCTTCTGGAATAGCAACAGTTTGTGGATTTTTCGTCGGGGCGGGTAAATACCGTTAATAAGAAGGCAACAACATGAGTGTCGAGGCGTACGGGCCGAGCTCGCAGACTCTAACGTTCCTCGACACCGAGGAAGCCGAGCTACTGGGAGCGGACACCCAGGGCTCCGAGTACGACTTCACCGATTTTACCCTGCCGAGCCAGACCCAGACTCAAGGCCAAACCCAGAGTCAGCTGGATAACCAGGTTAATGGCCCTGACGGCATGCTACAGAATGGAGAGGACTCTGTGGTAAAAGCCAGTCAGCTGCTGGCAGAGTTGAACtttgaggaggatgaggaggacaCCTACTACACCAAGGATCTCCCTGTACATGCATGCAGTTACTGTGGCATTCATGATCCCGCCTGTGTGGTCTACTGCAACACCAGCAAGAAGTGGTTTTGTAATGGCCGTGGAAACACATCCGGCAGCCACATTGTAAACCACCTGGTGAGAGCAAAGTCCAAGGAGGTGACCCTGCATAAAGATGGCCCTCTGGGGGAAACGGTACTGGAGTGCTACAACTGTGGCTGTCGCAATGTCTTCCTTCTGGGCTTCATCCCTGCCAAAGCTGACTCGGTAGTGGTGTTACTATGCAGGCAGCCATGTGCCAGCCAGAGCAGCCTGAAGGACATCAACTGGGACAGCTCCCAGTGGCAGCCCCTCATCCAGGACCGCTGCTTCCTGTCCTGGCTGGTGAAAATCCCTTCAGAGCAGGAGCAGCTCAGGGCTCGTCAGATCACCGCCCAGCAGATCAACAAGCTGGAGGAACTCTGGAAGGAAAATCCCACTGCGACCCTGGAGGACCTGGAGAAGCCTGGTGTGGATGAGGAGCCCCAGCATGTGCTGCTCCGCTATGAGGATGCCTACCAGTACCAGAACATCTTTGGTCCTCTCGTCAAGCTGGAGGCTGACTACGATAAGAAACTCAAAGAGTCTCAgACACAAGACAACATTACTGTCAGATGGGACTTGGGCCTGAATAAAAAGAGGATTGCTTATTTCACTCTTCCCAAGACAGACTCTGATATGCGACTGATGCAGGGAGATGAAATTTGCCTGAGGTACAAAGGAGACCTGGCCCCTCCATGGAAAGGCATTGGACATGTCATCAAAGTCCCTGATAACTATGGAGATGAGATTGCCATAGAGCTAAGGAGCAGTGCCGGGGCTCCAGTGGAGATCCCCCACAACTTTCAAGTCGACTTTGTGTGGAAGTCCACTTCCTTTGACAGGATGCAGAGTTCCCTGAAGACGTTTGCCGTGGATGAGACTTCAGTGTCGGGTTACATCTACCACAAACTGCTGGGACATGAAGTAGAGGATGTGGTCATCAAGTGCCAGCTGCCCAAACGCTTCACCGCTCAAGGCCTGCCTGATCTTAACCACTCACAGGTGTATGCTGTGAAGACAGTGCTGCAGCGTCCTCTCAGTCTGATCCAGGGTCCTCCTGGCACAGGGAAGACGGTAACCTCTGCCACCATCGTCTACCACCTGGCCAGACAGGGCAACGGGCCGGTGCTGGTGTGTGCTCCCAGTAACATTGCCGTCGACCAGCTGACAGAGAAGATCCACCAGACAGGCCTCAAGGTGGTGAGGCTGTGTGCCAAGAGCAGGGAGGCTATCGACTCGCCTGTGTCCTTCCTGGCTCTGCACAACCAGACCCGTAACATGGACAGTATGCCAGAACTTCAGAAGCTCCAGCAGCTGAAGGACGAGACTGGAGAGCTGTCTTCCTCAGACGAGAAGCGCTACAGAGCTCTGAGACGCACCGCTGAGAGGGAGCTGCTTATGaatGCCGATGTGATCTGCTCTACCTGTGTTGGGGCGGGGGATCCTCGTCTGGCCAAGATGCAGTTCCGCTCAATCCTGATTGATGAGAGCACCCAGGCCACCGAACCAGAGTGCATGGTGCCTGTCGTCCTGGGGGCCAAACAGTTGATTCTGGTGGGTGACCACTGCCAGCTAGGCCCTGTGGTGATGTGTAAGAAGGCAGCTAAAGCAGGTTTGTCACAGTCTCTGTTTGAGCGTCTTGTCGTTTTGGGGATCCGGCCAATTCGCCTGCAGGTTCAGTATCGCATGCACCCGGCCCTCAGCGCCTTCCCCTCCAACATCTTCTATGAGGGCTCTCTGCAGAATGGAGTCACTGCCGCGGACCGTGTGAAGAAAGGCTTTGACTTCCAGTGGCCACAGCCCGACAAGCCCATGTTCTTTTATGTCACCCAAGGCCAAGAGGAAATTGCCAGCTCTGGAACCTCCTATCTCAACAGGACTGAGGCAGCCAATGTGGAGAAAATAACCACAAGGTTGCTGAAGGCTGGAGCAAAACCCGATCAGATTGGAATCATTACGCCCTACGAGGGACAGAGGTCCTACCTGGTCCAGTACATGCAGTTCAGTGGCTCCCTCCATACCAAACTCTACCAGgAGGTGGAAATAGCCAGTGTGGATGCCTTTCAAGGCAGAGAGAAGGACTTCATCATCCTGTCCTGTGTGAGGGCCAATGAGCACCAGGGCATCGGCTTCCTCAATGATCCCAGACGTCTCAATGTGGCACTCACTAGGGCCAGGTATGGTGTGATTATTGTGGGAAACCCCAAGGCCCTGTCCAAGCAGCCTCTGTGGAACCACCTGTTGAATTACTACAAGGAGCAGAAGGTCCTGGTTGAAGGCCCCCTTAACAACCTAAGGGAGAGCCTCATGCAATTCAGCAAGCCCCGCAAGCTTGTCAACACCATCAACCCTggtGGTCGATTCATGAGCACAGCCATGTATGATGCCAGGGAGGCCCTCATTCCTGGATCTGTTTATGACCGCAGCAGCAACGGACGTTCGTCCAATATGTATTTCCAGACCCATGACCAGATTGGTATGATCGGAACAGGCTCCAATCCAATGACTTCCCTGAACATCCCCATCCCCTTCAACCTTGTGATGCCCCCCATACCTCCACCTGGGTACATGGGACAGGTCAATGGACCCTCAGCGGGCCGTGGTGGGGGTATGAAAGGCAAGGCAGGCAGCGGAGCAGGCGGCGGGATGCGAGGAGGGCGTCAAAGAAACCGCGGCAACTTGGGGAACCACAGCGGCGGACACGGAGGAGCAGACCGACACGGAGGCCACATGAGTGGCAGCCAGGCCAGCCAGGACCTGGGCTCCCAGCCCTTCTCCCAGGGGCCTCTGACGCAGGGCTACATGAACATGAGCCAGCCGTCTCAAATGAGCCAGCCTGGGCTCTCCCAGCCTGAACTCTCCCAGGACAGTTACCTAGGAGATGAGTTCAAGTCCCAGATTGATGTGGCTTTGTCCCAGGACTCCACCTACCAGGGGGAACGGGCCTACCAACACGGTGTGACTGGACTGTCCCAGTACTAGACTGTTGCTGGGAAGGAGCAAGGCCTGTGTGAAGCAAAGTTCAATGGTATTTTAATCTGGGTAATaacaaaaaagaacaaacatGGATACCCGTTTTCCACTGCTACAACTGAAGCACCACTGTGTGAAAGTAACAGGAGAGAGACCGTGAGAAACCAACCAATCACAAGAGTGAGAGCAACAATGGGTGTAGAGCTGGACAGGAAGAGAGCAAGGGACGAGCCTGGTGGAGGAGAGAAGGTGCTGCTGCTCACACGCGAGGACATGGCGAAAGAAGATAGCAGTCGTTGTCGAGGCGGGCGCAGTCGGAGAGGCGAGACCTTCGACGGGTCAAAGAGGGTGGAAGGTCCGAACGATTCTGGAAGGGGTGGGGGGACTGTGTCATCTTGTCCCTCGTGTGCCCCTGAACCCTCGGGGAACTCCAGGCGGAATGGTTGGGAATCTTGCTCCAAAAGCTgagaaagatggagaaaagGTGTCTCACACAAATGTCCTCCAAGCTAACTCAACAGGACATCTTCTGTgacttggagagagagagagagagagagagagagagagagagagagagagacacaaaaacaaagggGGACACAACTCTTGAAGCAGTTGATatggcaacttttttttttaactcaaagcTTGATTTGGGGCTCTGCATTTGATCACATCTAAGCATCCAGGAGAGAAAAGTTTGACAACACTGTTTGGCTAACCAAGTGAACTCAACAGTGCTTGTGGTGTTGTGCCTCAAAGAGTTCAAATGAAACGTGTGGATTACTTTGCCACAGATCACTCGCTTTTCTTTCTCAGCTTTGAGTCGGAAAGTTTTCTAAATACATGCTGTTTTCATTGAGGTATTCAGTGATGTAAGCTAGTGTAGTTGGCCCGTCTTTCAAAGGCAGGTCTTTCTAGAGGTGGTCTGCAAAGAACAAGTGGTGGAATTAGCTGTTAAAAATAGAAacctaaaagaaaaacatctttgTCTCCAGATCTGAGGAGGTGGGCTCCAGAGATCtgacaattttgtttttgtgtgtgaaaatgtatcttttagtaGTGCAAAAGAGTGAAAGTGAAAACCATAACCAGCTTATAACTGAATGAAGCGGCGTTCTTTTCTGCTGACCCTGATGCCACTAAAGCTAGCAGACGGGAATCGTCTTGAGTGTATATATAGCTAAATGCATCAAATAAGCCAAATCAAGAGGGCAGTTATTTCCAAAGACCCTTctccaaaagtaaaaaaaaaacaaaaaacaatgagATTATTTATGTACAATTAAAGCACCTGATGATGATCACACTAAAGTGAAGTAAGAAATCACTTCTATAAAATGAAATCATGAGCTTGAGTTTTCATGCCTATGGATAGCCTAACATGACCACTCCGTACAAAGGATGATGCAAGCTTCTGAGGCCCCAGCTTAGAGCAAATGTCTTGAACAGATCAAAGATTTCACCATGTTGACTGTGGTGAAAGATATTTTAGCATTTCGGAGAACCCATTGATAACAAATCGAAAGGTTACATGTTGTCGGTGCACTGTGAAATTTggcataacttttttttttttaaattaagacaCGAAGACCCAAGTGTAGTGTTTGTTGTCTTCCccttattgttgtttttgtcatttgttgtcCTAAAGTCTTTAACTTGtagaaaagtcaaaagtagtgtaacatGTAAAGGGCAAAACGGCTAGATTTAGTGGTTGAccgaaaaattttttttataaaatacaacaatttaaTAATAACATATGAGACACAAAATTGCTTAACTTAAATGaacatttatttga

Function

NR:

description
regulator of nonsense transcripts 1

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K14326 UPF1, RENT1; regulator of nonsense transcripts 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816510.1 True 5337 mRNA 0.50 24 34721550 34743010

Neighbor

gene id symbol gene type direction distance location
pgpep1 pgpep1,LOC103361119 coding upstream 1680 34714976 ~ 34719870 (+)
LOC120568198 LOC104920972,LOC103369709,LOC102237980,LOC108244847,LOC102193504 coding upstream 13577 34692627 ~ 34707973 (+)
ifi30 NA coding upstream 99181 34618552 ~ 34622369 (+)
mast3a LOC104920969,LOC103357775 coding upstream 155896 34530555 ~ 34565654 (+)
angptl4 LOC103369125 coding upstream 289046 34425299 ~ 34432504 (+)
LOC120568807 LOC100693392,LOC103352799,LOC101161005,LOC103131440 coding downstream 718 34743728 ~ 34766331 (+)
trnar-ccu_3 NA coding downstream 29064 34772074 ~ 34772146 (+)
trnam-cau_25 NA coding downstream 29140 34772150 ~ 34772221 (+)
trnam-cau_26 NA coding downstream 33068 34776078 ~ 34776149 (+)
LOC120568812 LOC102310619,LOC100692846,LOC108280567,LOC105903927,LOC106524909,LOC108427173 coding downstream 66882 34809892 ~ 34824821 (+)
G120295 NA non-coding upstream 103338 34617774 ~ 34618212 (+)
G120291 NA non-coding upstream 152785 34568185 ~ 34568765 (+)
LOC120567793 LOC100694462,LOC104944857 non-coding upstream 229173 34472849 ~ 34492377 (+)
G120237 NA non-coding upstream 286155 34433839 ~ 34435395 (+)
LOC120568876 NA non-coding upstream 343655 34349280 ~ 34377895 (+)
LOC120568809 NA non-coding downstream 25091 34768101 ~ 34771677 (+)
LOC120568810 NA non-coding downstream 49748 34792758 ~ 34797847 (+)
G120391 NA non-coding downstream 153525 34896535 ~ 34897133 (+)
G120393 NA non-coding downstream 162136 34905146 ~ 34905390 (+)
LOC120568917 NA non-coding downstream 210315 34953325 ~ 34954407 (+)
pde4ca pde4c,LOC101063915,LOC100693394,LOC102791393,LOC102313416 other upstream 29930 34624276 ~ 34691620 (+)
pik3r2 pik3r2,LOC102792547,LOC100693657 other upstream 113794 34569394 ~ 34607756 (+)
G120249 rps15,rig,rs15 other upstream 263939 34453722 ~ 34457611 (+)
rps28 NA other upstream 317549 34400748 ~ 34404001 (+)
G120200 NA other upstream 403784 34317148 ~ 34317766 (+)
LOC120568940 NA other downstream 851868 35594878 ~ 35642033 (+)
G120716 NA other downstream 1662230 36405240 ~ 36405773 (+)
G120717 NA other downstream 1663111 36406121 ~ 36406689 (+)
LOC120568208 LOC103361715,LOC100701557,LOC100700197,LOC101469035,LOC102215562,LOC102289753 other downstream 2136908 36879918 ~ 37087443 (+)
G120914 LOC103396775 other downstream 2559884 37302894 ~ 37306014 (+)

Expression


Co-expression Network