cdk5 (cdk5,LOC106599847)


Basic Information

Item Value
gene id cdk5
gene name cdk5,LOC106599847
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21291706 ~ 21298333 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816532.1
CAACCGCCCATAAaccacaaagaagaagaagatcaaCTAGGAGCAGCAAGTGCACATAGCtttaagctaacgctagctatcATAACATTATTAACCCCAATTTGGGGCCTTAATCAGTCATTGTCTTGCTACCTTGTTTAAGGCAGGCTTCTCTGGCTAAACATGCAGAAATACGAAAAGCTTGAAAAAATTGGAGAGGGTAAGTTTCATACGCTTTTTaaaaaaaaaaaaaaaaaattattaaaaagggtCAGGCTGGACGACGACGACGAGGGGGTGCCAAGTTCTGCTCTGAGAGAAATATGTCTTCTGAAGGAACTAAAGCATAAAAACATAGTCAGACTACATGATGTTTTGCACAGTGACAAGAAGTTAACCTTGGTTTTTGAATATTGTGATCAGGATTTGAAGAAGTATTTTGACAGCTGCAATGGGGATCTAGATCCTGAAACTGTGAAGTCATTCATGTACCAGCTGTTGAAAGGCCTCGCTTTCTGTCACAGTCGAAATGTTCTTCATAGAGATCTGAAGCCGCAGAATCTCCTCATAAACAGAAATGGGGAATTGAAGCTGGCTGACTTTGGGTTGGCTCGAGCCTTTGGCATACCTGTGAGGTGTTACTCAGCAGAGGTGGTGACTTTGTGGTACAGGCCTCCAGATGTGCTATTTGGTGCAAAACTTTATTCTACCTCAATTGACATGTGGTCTGCAGGATGCATATTTGCAGAGCTGGCTAATGCTGGAAGGCCTTTATTCCCCGGGAACGATGTGGACGACCAGTTGAAAAGAATCTTCAgGTTGTTGGGTACACCAACTGAAGAACAGTGGCAGACAATGACGAAACTCCCCGATTACAAGCCATATCCAATGTATCCAGCCACCACCTCACTGGTGAATGTGGTTCCCAAACTAAGTAGCACAGGACGGGATCTACTCCAGAACCTGTTGAAATGTAATCCTGTCCAGAGGATCTCTGCAGAAGAGGCCTTGCAGCACCCTTACTTTGCTGATTTCTGCCCACCCTAAATGCTAAAATGCTCTCGCTGAACCTCAGCCACCAGAACCAATCATCCTTCACTCTGTTGGGTCATTAGGACCAGTCCCAGCAAGACAAATCCCTCACTGGTTTTCAAACACTCTCTTGCATTTTATTCTGTTGTGCCTCTGTGTGGAACAAAGTCCTGGTGGCTCTGCAAGGTTTAGGTTCTTTTAAGCTGCAAGCCTGTTTAATTTGGTACATATATACGCCTCCCAGTTAACTAGCACTAATGTGGGAGGGTGCACTCTGTGTtgcatcaaatacatttttataccTGTGGAAACAGTTGTAAACAAGACGTACCATTAATTGCTTCCATTAATAGAAGTCTTAACATTGGTGGAGACTGTAGTTTTGATGCCAATACCTATATTGATATCTGAGTTTGAAAAATGTAGATATATTGGCCATCAACACAAAGCATAAACACAAATGTTTGATGAGAATCACTCaaattttattattaaagaATTGAGATATGTGTGGACAGACTATGTAATGGTGACACAATTTCTCAATGATCTAAAACATTTGGCATTTCTGTACTGCAGGTTGTTCCTTATTAGCCACGATATACTCTAGTTCTGGTGCTGGTACATCTGTGATAAGTTAATATCTGCTGATATTTTGGCTCTAGTGATTCCCAGGCAGCTTAGGCTACAATGTTGCGATTTTAATTTTTGATTTGTCAGTTTTCGAATCACAAGCAAGCAATTTATTTGAAAATTGTATAGGCTTAAGTTGATGTTACTTTATTTTTAGGattgtgttatttttgtaacactttattttacaagtCTGTAATTTATAAAACTACTGCATGTGA

Function

symbol description
cdk5 Enables cyclin-dependent protein serine/threonine kinase activity and histone kinase activity. Acts upstream of or within several processes, including nervous system development; retina morphogenesis in camera-type eye; and type B pancreatic cell differentiation. Predicted to be active in cytoplasm and nucleus. Is expressed in blastomere; central nervous system; immature eye; musculature system; and neural plate. Human ortholog(s) of this gene implicated in Alzheimer's disease and lissencephaly 7 with cerebellar hypoplasia. Orthologous to human CDK5 (cyclin dependent kinase 5).

NR:

description
PREDICTED: cyclin-dependent kinase 5

GO:

id name namespace
GO:0021634 optic nerve formation biological_process
GO:0007049 cell cycle biological_process
GO:0016572 histone phosphorylation biological_process
GO:0051301 cell division biological_process
GO:0021954 central nervous system neuron development biological_process
GO:0048935 peripheral nervous system neuron development biological_process
GO:0010842 retina layer formation biological_process
GO:0043524 negative regulation of neuron apoptotic process biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0050321 tau-protein kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004693 cyclin-dependent protein serine/threonine kinase activity molecular_function
GO:0035173 histone kinase activity molecular_function

KEGG:

id description
K02090 CDK5; cyclin-dependent kinase 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816532.1 True 1865 mRNA 0.40 12 21291706 21298333

Neighbor

gene id symbol gene type direction distance location
abcb8 abcb8,LOC103375355,LOC102789860 coding upstream 1205 21285152 ~ 21290501 (+)
guk1a guk1,LOC107100458 coding upstream 83022 21200717 ~ 21208684 (+)
arf1 arf1 coding upstream 95949 21192298 ~ 21195757 (+)
wnt3a wnt3a coding upstream 112875 21163720 ~ 21178831 (+)
snap47 snap47 coding upstream 231956 21053381 ~ 21059750 (+)
zgc:92591 LOC103479695,LOC101468538,LOC101063387,LOC100696317,LOC105935710,LOC106963471,LOC103358166 coding downstream 129686 21428019 ~ 21428679 (+)
asb10 asb10 coding downstream 136634 21434967 ~ 21439933 (+)
gbx1 gbx1 coding downstream 143427 21441760 ~ 21444125 (+)
rb1cc1 rb1cc1 coding downstream 282947 21581280 ~ 21595237 (+)
st18 NA coding downstream 303719 21602052 ~ 21642496 (+)
G116616 NA non-coding upstream 47313 21243641 ~ 21244393 (+)
G116583 wnt9a non-coding upstream 157694 21129608 ~ 21134012 (+)
G116538 NA non-coding upstream 261210 21021631 ~ 21030496 (+)
G116529 NA non-coding upstream 262724 20949004 ~ 21028982 (+)
G116514 NA non-coding upstream 410710 20880692 ~ 20880996 (+)
G116723 NA non-coding downstream 155997 21454330 ~ 21500394 (+)
G116746 NA non-coding downstream 315767 21614100 ~ 21662470 (+)
G116794 mapre2 non-coding downstream 536133 21834466 ~ 21838752 (+)
G116857 NA non-coding downstream 637186 21935519 ~ 22020278 (+)
LOC120568180 NA non-coding downstream 726780 22025113 ~ 22036950 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 376384 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 916073 20373227 ~ 20375633 (+)
emilin2a NA other upstream 1826325 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 2239464 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 2566259 18720365 ~ 18725447 (+)
LOC120568354 NA other downstream 572620 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 1309716 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 1343177 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 2135292 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 2294399 23592732 ~ 23685804 (+)

Expression


Co-expression Network