prkci (prkci)


Basic Information

Item Value
gene id prkci
gene name prkci
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18521969 ~ 18556360 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816544.1
CGCATTCCGACAATGGACTCGTCCGTCGTAAGGCCTTTGCAGTAGGGAGTTGTTTGGCGGACCCCGCaagtttttctttacttttcatGTTATTGTTGTGTCTCTAAAGAAGCCTACATTGTTCATTTTTATCAACACTTGTCTCGTTGTTCACTCGGTGTGTCGACGGACTTTAAAAGCAAGTGTTTTGTGCGTGGTACACAACTAGCTAGAGAgcgaaagaaggaaggaaggcatcGGAGACTGGGACTGGCTGAGCTTATGATGCCGACGTTGCGGGACAGCACCATGTCCCACCCCGGCGAGAATTCCCACCAAGTCCGGGTGAAAGCGTATTATAAAGGGGACATCATGATCACTCATTTTGAGCCGTCCATCTCATACGAGGGTCTGTACGGGGAGGTTAAGGACATGTGCTCCATGGACAACGACCAACTCTTCACCATGAAGTGGATCGACGAGGAAGgtgaCCCCTGCACCGTGTCGTCTCAGCTGGAGTTGGAAGAAGCTCTGCGTCTCTACGAAGTCAACAAAGACTCGGAGCTCATTATCCATGTGTTCCCATGTATACCAGAGAAACCTGGTATGCCGTGTCCGGGAGAAGACAAGTCTATATATCGGCGTGGAGCCCGGCGCTGGAGAAAGCTCTACTATGCCAGTGGTCACGCCTTTCAGGCCAAGCGCTTTAACAGGCGGGCCCACTGTGCCATCTGTACAGACCGGATCTGGGGTCTGGGAAGACAAggctacaaatgcatcaactgCAAACTGCTGGTGCACAAGAAGTGCCATAAACTGGTCACAGTGGAGTGTGGTAGACCGATGATCCAGGAACCAATCATGCCCGGCCAACCATCGAGTCAATTAGACCAGACTGAACagccaggCCCTCAGAATAAAGACTCCAGAGAAAGCTTGACTTACGATGGAGAAGAGAAGGAGGCGCGGAGCAGTAGAGACACAGGAAAATCGCCTTCCAGCCTGGGCCTGGCAGACTTTGATCTGCTGAGGGTGATCGGCCGAGGCAGCTACGCCAAGGTGCTGTTGGTGCAGCTGAAGAAGACGGAGCGCATCTACGCCATGAAGGTGGTGAAGAAGGAGCTGGTCAATGACGATGAGGACATCGACTGGGTCCAAACAGAAAAGCACGTTTTCGAGCAGGCCTCCAATCATCCCTTCCTGGTTGGCCTCCACTCCTGTTTTCAGACAGAAAGCAGACTTTTCTTTGTTATTGAATATGTGAACGGTGGAGATCTCATGTTCCACATGCAGAGACAAAGGAAACTCCCCGAAGAACACGCCAGATTTTACTCGGCAGAGATCAGTCTGGCGCTCAACTACCTCCACGAGCGGGGAATCATCTACAGAGATCTGAAGCTGGACAACGTGCTGCTGGACTCTGAGGGACACATCAAGCTTACGGACTACGGCATGTGCAAGgaGGGCTTGAGACCTGGCGATACAACAAGCACTTTCTGTGGTACCCCCAATTACATTGCCCCTGAAATACTCAGAGGAGAGGATTACGGGTTTAGTGTGGACTGGTGGGCGCTGGGCGTGCTGATGTTTGAGATGATGGCAGGCCGGTCGCCCTTTGACATCGTCGGTAGCTCTGACAACCCAGACCAGAACACAGAAGACTACCTCTTCCaagTAATATTGGAAAAACAGATCCGAATCCCCCGCTCTTTGTCAGTCAAAGCTGCCAGCGTTCTCAAGGGATTCCTCAACAAGGATCCCAAGGAGCGTCTAGGCTGCCACCCTCAGACAGGTTTTGCCGACATCATGGGCCATCCATTCTTTCGAAACGTTGACTGGGACCTTCTGGAGCAGAAGCAGGTGGTCCCTCCTTTCAAGCCCAACATCTCAGGGGAATTCGGACTGGACAACTTTGACGCCCAGTTCACCAACGAGCCCATCCAGCTCACGCCTGATGATGATGATGTGGTCAAGAAGATCGACCAGTCTGAGTTTGAAGGATTTGAGTACATCAACCCACTCCTGATGTCAGcggaggagtgtgtgtgagagaacgCGACGTCTGTGCTCGTACACAcctcccacacatacacacacacacacaaacacacacacacaatcatgcaCGTGTTACGTGGCGTCTCAGTGTCTTCAAGCTGCATGGTTACGAGACAACCCGGCGACATCAACCTTCTGTTCGAGGGCCGCACATGCACAGCAGAACGCTTTTTTTGCCAAAACCAGTCTCACACTCTGCCATTTATAACCACTTGCCCTTAAGCCTACcttcttttttaattatttttatatcaTGTAAATCTGCACTGATATCGATTTTCTCATCGGGGTCTCTTTATCGGGAGCCAATGAGGCTACAGAGTCCTTAAAGGTTGCTGTACACAGGGGCAGGGGATGAGGCACAGCCCTTGACAGATTGACTGAACATCCTCTCGTTCCAGCTGGTCGGGTGTTTTCAATGcttattttatttgtgtgtgtatgtatgtatgtatat

Function

symbol description
prkci Predicted to enable phospholipid binding activity and protein serine/threonine kinase activity. Acts upstream of with a negative effect on apical protein localization. Acts upstream of or within several processes, including animal organ development; digestive tract development; and morphogenesis of an epithelium. Located in zonula adherens. Is intrinsic component of plasma membrane. Is expressed in several structures, including blastoderm; common cardinal vein; eye; posterior lateral line primordium; and pronephric duct. Orthologous to human PRKCI (protein kinase C iota).

NR:

description
protein kinase C iota type

GO: NA

KEGG:

id description
K06069 PRKCI; atypical protein kinase C iota type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816544.1 True 2494 mRNA 0.51 18 18521969 18556360

Neighbor

gene id symbol gene type direction distance location
dapk3 dapk3,LOC102784251 coding upstream 16302 18496691 ~ 18505667 (+)
arhgef18a NA coding upstream 42248 18466050 ~ 18479721 (+)
insra insr coding upstream 68004 18394984 ~ 18453965 (+)
mfsd14a2 mfsd14a,LOC103353046,LOC100705862,LOC102785602 coding upstream 136998 18360882 ~ 18384971 (+)
myo9b NA coding upstream 161739 18328258 ~ 18360230 (+)
nadkb LOC103353035,LOC102782138,LOC101483211,LOC102289018 coding downstream 52853 18609213 ~ 18625177 (+)
LOC120568684 NA coding downstream 124240 18680600 ~ 18682419 (+)
LOC120568690 NA coding downstream 143122 18699482 ~ 18701227 (+)
apoda.1 LOC103353029,LOC104955147,LOC101484702,LOC102313692,LOC102209340 coding downstream 159998 18716358 ~ 18718511 (+)
and2 LOC103353068 coding downstream 174368 18730728 ~ 18737190 (+)
G115793 NA non-coding upstream 31783 18488531 ~ 18490186 (+)
LOC120567854 NA non-coding upstream 56519 18458181 ~ 18465450 (+)
G115781 NA non-coding upstream 66349 18454033 ~ 18455620 (+)
G115733 NA non-coding upstream 136000 18379112 ~ 18385969 (+)
G115723 NA non-coding upstream 224460 18296146 ~ 18297509 (+)
G115826 sec62 non-coding downstream 76356 18632716 ~ 18646383 (+)
G115856 samd7 non-coding downstream 92414 18648774 ~ 18649804 (+)
G115862 NA non-coding downstream 127354 18683714 ~ 18684465 (+)
LOC120568663 NA non-coding downstream 133274 18689634 ~ 18692121 (+)
G115863 NA non-coding downstream 136645 18693005 ~ 18694301 (+)
G115729 NA other upstream 167625 18305149 ~ 18354344 (+)
LOC120567767 NA other upstream 492074 18027280 ~ 18029895 (+)
LOC120568596 LOC103479750,LOC106948690,LOC102229933,LOC103146349,LOC108232807,LOC105930991,LOC100691642,LOC103353958,LOC107383564 other upstream 1038416 17406497 ~ 17483553 (+)
LOC120568363 ankrd12,LOC103396444,LOC102778611 other upstream 1909763 16610376 ~ 16612206 (+)
LOC120568419 LOC102779359 other upstream 1994287 16439025 ~ 16527682 (+)
skila skil,LOC102782637 other downstream 10273 18566633 ~ 18602263 (+)
LOC120568691 NA other downstream 104069 18660429 ~ 18674140 (+)
LOC120568911 NA other downstream 164005 18720365 ~ 18725447 (+)
LOC120568770 NA other downstream 460679 19017039 ~ 19052242 (+)
emilin2a NA other downstream 890651 19447011 ~ 19465381 (+)

Expression


Co-expression Network