ttpa (ttpa)


Basic Information

Item Value
gene id ttpa
gene name ttpa
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 7952012 ~ 7961067 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816546.1
cccgctcCAGTAGCAGCCAGCGGCCACAGGCAGTGATATGTAGCCGGGGGCCTGCCATAATAACGCGGGTGCGACATGAACGGGGCTCAGCTCAGTGAGCTCCCGAACGACTCGGAGCAGCTCGGGCCGTATGTGAGCGGCCTGCGGCGCAGAGCCCTGCAGGCCGGCGAGCTGTCCGCCGTCAGGACCTTCTCCGACCAGTTTCTCCTCAAGTTTCTGCGGGCCAGAGACTTGGACGTGGAGCTCTCTCTGAAGCTCTTACTGAACTACCAGCGGTGGCGGAGGGAGAGTCCTGAGATCagcacctgtctgtctccctcctcgGTGCTTGGCCTCCTCAACACAACATACCACACCGTCCTCCCCCAGCGGGACCGCACCGGCAGCAGGGTGCTCATCTACAGGattggTCAGTGGATCCCGAAAGACTGGTCGGCCTTCCAGGTGTTCAGGGTCAGCCTGATGacatcagagatcatctccatGGAGACGGAGACGCAGAGAAAGGGTCTGAAGGCCATATTTGACTTGCAGGGGTGGAGTTTGGGCCACGCCCTGCAGATTAACCCTTCCCTCGCCAGAAAGATATCCTCTGTGCTTTCGGACTCTTTTCCACTGAAAGTGAGAGGAATCCACCTGGTTAACGAGCCAATGTTCTTCCGGCCAGTCTTCGCCATGATTCGTCCCTTTCTGCCAGAAAAGATCAGACAGAGGATCCACATGCACGGCGCTGATTTCCACAACACTTTGAGCGACTTCTTCCCCCCGTCCGTCCTGCCACCAGAATACGGAGGGGAGGGGCCCGGCATAGAGAGGGCCTGTCAGGACTGGACCAATAAGCTGCTTCAATCAGAGACGCTCCTGCAGCAGATTGCCTCTCACCCAACAGGCGACATCGCCGTTACTCCTGAGGACTCCTTGATCTCCGAGGAAAGGGGAGAATGAGAGACTATTCGGATCACACCTACACGCTGCTGTTTTTTCGTCCTTCCTCGGCTGGGGGCCTCCGCTCTGGCGCCCTGGTGCTGCCAGCCAGCCCGGCTCCTTACCCTTGTCGATCGGTGGAAACTTCAGCGTTGTCACTTAAATGACAATTTGACAATGATTATTTAGTATACATTGAAAGACGTCTACCGGAGGGAAGAGGAGCGGGGACGGCAATTCATTAAGGATACGCTGGACTTGCTGTGCGGTCTGTTTTCCTCCGAACGTGTCCTCACGCAACTCTCCAAACTCCCTTGTTTCCGTTCTGCTTCAAGCCCTATGACGCAGCCGCACCGACACCCACCCCGCAGTCAGGCGGCCAATCAGCTAACAGTTGTGTTATGACGCGACACGAGGTGTTGGCTGCATATCAAGAGAGCCGTCTGTGCTGCCTTAAAACTTTTCAGCTCTGGTCCATCTGATTGATTTACTGTATGTGCGCCTGTGAGCTGTCTTCCTACATTGCTCATTGAAATCTGACCAAAGCGAGAAGTTGCATCATCTTATTGAAATACacgtttgcttcttttttttttcttccccaaaAGAGACAGGAAGAGGCCGATGCCAATCTCACGTCTGTGTGCTGAGTTTGAGTCCGGGCgtagttagcctagcttaggATGCAGACTGGGAAACGGAGGAAACTCTATCTGGTCTCTGCATGtgtatgtaaaaaagaaaaactgtcaaCACCTCCAAAGCTTAGCCACTGccgatttattatttttattattgtctgGATTCACTGATTAgtcgtttggtctataaaaagtcagaaaatagtaaaagATGACGATCcatgtttcccaaagcccaagatttCGTCCTAAAATgtcttttgtccacaactcaaagatattcagtttactgaaccagaaaatatttacatttaaaatgctgGAATTAGacaatatttccttttttttttttttttttttatcaacgaAAATGACTCAAATTGATGAAATCAAAATAGTTAGCAATTCATTTATAGACTACAACTAATCGatgaattgattaatctttgcggCTCTAAAACATACAAGATACAATGTGTAAATAAAACCActtcagatattttttttaaacgttggAAGGAGCCAAGCTattgattccccccccccccgtgttTACATTAAGCTAGTCTGATCCAGCTCTGTACTTTAAGCACAAACATAGAAGCAGCATCGATGTTTTTATCTtactctttaaaaagaaaatagaaagcaTACGAGCACATATTTCCCACAATGTTGACCTTTTTTTATGTAATAAATAGactttttattcttgtattaagattattttagattttttttcagtgttatCTGAGCAGACTCTTCTCAGTGTTTTGAGGTAGGGACTGGAAACAAAGCTACCTTATCAGGTCTTTTACTTTTTACAGGAATGTCGCTGGATGTCACACcaagacaagtctttttttggttacactttacttgaaggtatctacataagagtgtcatgttcatgaccgtgtcatgtcactcttatgtagataccttcaagtaaagtgttaccttcTTTTTCAGGGCTGGCTGTAGTGTAGTTGTTCTGTAGTTAGACATTAATAACCAGTGGACCTCAGGGATGGAGTGCAAGAAAGGAGATCTGTGTAGCAGCTGCAGGGCACAACCTTCACTCAGAGGACCAAAGAGACAAGAAACCAAGAAAAACCCAGCAGTCCTCTCGGCTGTAAAGTCCTGTCAACTCAATCTAAGCGCCGCTGTGGCTTCCTAGGCATCAAACTCTCAAACCGTTTCCAcaagtgtgtgttttaagttCCCCATGGACAGCAACGCTGCAGATGAGCATGAACCCTGACCTCCCCTCCGACTCAtcactccatccatccatccatccatccagacaGTCATCTTATCTAACCAGCCAAAAACCCAATCCATCCAGTGCTGCTGTCTGCAGGATGGGCCAGATTACTGGGAAATGTGGTCAGTTACTGAATACAAATGACATGGCAGTTTTTTTGTAATCAGTAATGTAATCCATTGGAttacaaagaaaatgtgatctaatctgaatacttttggatgacttcaaaatgaaacattgtAAATCTTGCACcttatgctaaaaaaaaaaaaaaa

Function

symbol description
ttpa Predicted to enable lipid transfer activity; phosphatidylinositol bisphosphate binding activity; and vitamin E binding activity. Acts upstream of or within central nervous system development and chordate embryonic development. Predicted to be active in late endosome. Is expressed in several structures, including eye; immature eye; liver; neural tube; and tail bud. Human ortholog(s) of this gene implicated in familial isolated deficiency of vitamin E. Orthologous to human TTPA (alpha tocopherol transfer protein).

NR:

description
PREDICTED: alpha-tocopherol transfer protein

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K24455 TTPA; alpha-tocopherol transfer protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816546.1 True 3113 mRNA 0.47 5 7952012 7961067

Neighbor

gene id symbol gene type direction distance location
asph asph,LOC103370744,LOC108250906 coding downstream 13235 7904205 ~ 7938777 (-)
shhb LOC104930803 coding downstream 81895 7866394 ~ 7870117 (-)
cnpy1 LOC103363935,LOC102314352 coding downstream 115066 7817747 ~ 7836946 (-)
paxip1 paxip1 coding downstream 184176 7741684 ~ 7767836 (-)
LOC120567743 NA coding downstream 327904 7622114 ~ 7624108 (-)
LOC120568123 xpr1,LOC101080083,LOC103396762 coding upstream 10882 7971949 ~ 8022906 (-)
tmem70 NA coding upstream 102016 8063083 ~ 8067449 (-)
LOC120567605 LOC101471767,LOC104938020,LOC102193348,LOC100709377,LOC103374359 coding upstream 118229 8079296 ~ 8085926 (-)
cntnap2b LOC101476225,LOC102211470 coding upstream 142334 8103401 ~ 8136557 (-)
ccr12a LOC101473018,LOC104945947 coding upstream 179165 8140232 ~ 8146892 (-)
G112887 NA non-coding downstream 25820 7924102 ~ 7926192 (-)
G112871 NA non-coding downstream 48122 7901580 ~ 7903890 (-)
G112779 NA non-coding downstream 93937 7857850 ~ 7858075 (-)
G112778 NA non-coding downstream 96123 7855672 ~ 7855889 (-)
G112764 NA non-coding downstream 149460 7802340 ~ 7802552 (-)
G112877 NA non-coding upstream 3372 7964439 ~ 7966305 (-)
G112876 NA non-coding upstream 6366 7967433 ~ 7969334 (-)
G112902 NA non-coding upstream 83043 8044110 ~ 8045481 (-)
G112903 LOC104931871 non-coding upstream 95535 8056602 ~ 8060033 (-)
G112897 NA non-coding upstream 178383 8139450 ~ 8192584 (-)
cdh6 LOC103366829,LOC104926815 other downstream 788342 7076609 ~ 7163670 (-)
si:ch211-267e7.3 LOC103370300 other downstream 961890 6956440 ~ 6990122 (-)
zmynd11 zmynd11 other downstream 1215500 6695610 ~ 6736512 (-)
LOC120567959 NA other downstream 1773126 6172281 ~ 6178886 (-)
G112328 NA other downstream 2099565 5793163 ~ 5852447 (-)
trnak-uuu_16 NA other upstream 526400 8487467 ~ 8487539 (-)
G113070 NA other upstream 819385 8780452 ~ 8790042 (-)
chd7 chd7,LOC103370133,LOC102782711 other upstream 1153317 9114384 ~ 9194872 (-)
LOC120568397 NA other upstream 1439720 9400787 ~ 9510497 (-)
brinp2 brinp2,LOC103369811 other upstream 2079619 10040686 ~ 10267078 (-)

Expression


Co-expression Network