atg9b (atg9b)


Basic Information

Item Value
gene id atg9b
gene name atg9b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21273384 ~ 21284939 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816561.1
CGTTTTGTTGACATTTATTtgtgaaagacaaaaacagtgGATACACACTGGATGGTGTATTTTTGGAAACCAACTAGCTAGTAGACCTCGCAACAGACTGAAGACCAACGATTCGTGATTAAAACATACCCGCGTGTATAAAACCAGCTCTGATCAAGATTGGACTTTAAGCAAAGACGAAAAGGATCCACCGTCAGCAGATGGACAGACCAAGCCGGGGAACAAAACAAACCGTTTCACCCCGGGACTGCATGAGTGGCTGAATCATTCACAGGCTAACCAGCCATCAGACAGTTAAGTTAGGTTGTAATCTTAAACGACGTTAACTAACATTGTTTAGTTAATCTGCCGAAGATTTGTGTAGTTAACTCTTAACTGCCACCCAGTATTTTTCATGTTACCATGGTAGTGTAGGGTTACATGAGCGTTGTCCGTCAGACTAGcaagttagcaagctaatgttagctgtagctaacgttagcattattTGAACTTGCTTGAAATTGCTTGACTTGCTGAGTATCTAGCTACAGAATGTAGCTGAGGTTACGAGACTGCATTCGTGTTATACAGTGTTTACTACAAGTAGCTCGTCAGTTGGGGGTGACCTTAAGAATGTGAAGCACAATGGCCAACTTTGAAGCTTACCAGCAGTATCAGAGaattgaggactttgaggaggaCTCACCACCAGGGGAGGAGGATTTACTGGTGCATGTGCCTGAAGGCCTGAAAGACTCATGGCACCATATCAAGAACCTGGATAACTTCTTCAAAAGGATCTATCATTTCCATCAAAAGAATGGCTTCGCTTGTATGATGATGTCAGAGTTCTTTGAACTTGTTcagttgttgtttgttgtcacGTTCACGACGTTCCTTGTCAACTGTGTGGAGTATGACATCCTGTTTGCCAATCGAGCGGTCAACCACACTGGGCCGGGCCATAACCCCTTGGACAGGAACAAGGTCACTCTTCCAGATGCCATCCTGCCTAGTCAGCAGTGTACTCAGAGGATTCAGGAGAACAGTTGGATTATATTCCTTCTCATCATGGCAGCCATCTTCTGGATTTATCGACTTGTTAAAGTATTTTGCAATGTTCTGAGCTACTGGGAGATCAGGCAGTTCTACATCAAAGCACTGAAGATCCGAATGGATGAACTTTGCAACTTCACATGGCAGGAAGTCCAGGACCGGCTCATCAGCCTGCAACGAGAACAGCAAATGTGCATACACAAGAAAGAGCTGACAGAACTTGACATCTATCACCGCATCCTTCGATTCAAGAACTACATGGTGGCCATGATAAACAAATCACTGCTGCCAGTGCAGCTGCAGCTCCCCCTGCTGGGCAATGTGGTGTTCCTCACGCAGGGCCTCAAGTACAACTTTGAGCTTATTCTCTTCTGGGGTCCTGGCTCCCTGTTTCAGAATAAGTGGAACCTTCACCCCAAGTACAAGCGGAATGGAAACCGCCTAGAGCTCGCACAGCAGCTTAGTAGAGTCATCCTGCTGATGGGTTTGGCCAATTTACTGCTATGTCCCTTCATCCTGGTGTGGCAGGTGCTCTACGCTTTCTTTAGCTATACAGAAGTCATTCGCAGAGAACCTGGAAGCCTGGGCGCACGGCGCTGGTCCCTGTATGGTCGCTTATACCTGCGACACTTCAATGAGCTGGACCATGAGCTGCATGGACGTTTAGGCCGTGGCTACAAACCCACTTCCAAATACATGAACTCCTTTACATCACCAGTGCTGACTGTGCTGGCTAAGAACCTTGCCTTCTTCTCAGGCTCAATTTTGGCTGTGCTCATTGCGCTGACAGTCTATGATGAGGATGTTCTGACAGTGCAGCACATTCTGACTGCCATCACTGTGCTGGGAGTGGTTATTACTATCGCCAGGTCCTTCATCCCAGATGAGCATATGGTGTGGTGTCCAGAACAGCTGCTGCAGTGCATGCTGGCACACATTCACTACATGCCAGACCACTGGAGGGGCAATGCTAACAAGAGTGAGACCCGAGACGAGGTGGCGCAGCTGTTCCAGTACAAAGCAGTGTTCATTTTGGAGGAGTTGCTCAGTCCTATTGTCACACCCTTCATTCTCATCTTCCACCTGCGGAATAAGTCTCTAGAGATCATTGACTTCTTCAGGAACTTCACTGTGGAGGTTGTTGGAGTTGGAGACATCTGTTCCTTTGCGCAGATGGACATCAGACGCCATGGAAACCCAACATGGCTGTCAGAGGGCCAGACGGAGGCCTCCATATACCAAcaagctgaaaatggcaagacAGAGTTGTCTCTTATGCATTTCACCATTAAGAACCCACGCTGGCAGCCACCTCAGGAGAGCTCAGTGTTCATCAGCCATCTGAAGGACAAAGTGCAGCATGATGCACAGGGTGGCCCCTCCACCCAGCTGCTACTCTCTGAAGCTCCTTTCTGCACCTCGCTGCAGTCCAATGAGTCTGGCACTGTGcCTGATAATCTTTTGGCCGGTGTCCTGGCTCACTCCAATCTAACTGCATCTGGATTACAAGGGCGAGACCATCGCTTCATCCCACCGAGCACCGCTGCTTCTGCCGCTGCCAGTGTCCTGGCCTCTTTCTCCACCTCCCAGCTCGCACATACCAGCCGTGGACGCTCACATGGCCTCCTGCGCTCATCCGTCCCCCCCGAGAGCACCATGTACCGCAGTGATCGCACCGTCATTGACAGTATGTCTAACAGTGACATCCGGAGCAATACACTGCACTCAGAGTTTGCCTCAGCAGAGATGAGTCTCCATGCCATCTACATGCATGAGCTCCACCAGCAGAGCTCCCACCCACAGAGGACTTCGGGGCAGTGGCAGAACCCAGTGCCAATGAGAGatctacacacaaacactgATTTCCAGGCACATAGTGGCCTTGGCTCCAGCATTTCAATGCCCACCACTGTCCACTTTGGTGGCTGGCAAgagaaggaagaagaggagaatgAAGATGATCAGGAGATTAACAGTGGATCTACTCCAAAACAGGGCACTGGGAGTAGTTGTTGAAGTGCCTTAGGTCATAAGGTATATGCTCTCTTTTAAACTCTGTAATATGACACATGTCTACGATCTATGCTTTGTGGTTCTGTATCCTGTGTGTTTGTCGAACCCAACAACAATGGCCTTTTATCCTATTAGGGATACATCGCCATGATaatttctcctctcttttttattttttatagtgtTTACATTTTACTTTCTTCTATGAACATTGTGGCCTTAGATGATTTTCATGGAGAATTTAGCATGGACCTTTTAAAACATCATTAAGCGTTTGTTGTAGGAGGGGCTCGTTGAATAACCACT
>XM_039816562.1
CGTTTTGTTGACATTTATTtgtgaaagacaaaaacagtgGATACACACTGGATGGTGTATTTTTGGAAACCAACTAGCTAGTAGACCTCGCAACAGACTGAAGACCAACGATTCGTGATTAAAACATACCCGCGTGTATAAAACCAGCTCTGATCAAGATTGGACTTTAAGCAAAGACGAAAAGGATCCACCGTCAGCAGATGGACAGACCAAGCCGGGGAACAAAACAAACCGTTTCACCCCGGGACTGCATGAGTGGCTGAATCATTCACAGGCTAACCAGCCATCAGACAGTTAAGTTAGGTTGTAATCTTAAACGACGTTAACTAACATTGTTTAGTTAATCTGCCGAAGATTTGTGTAGTTAACTCTTAACTGCCACCCAGTATTTTTCATGTTACCATGGTAGTGTAGGGTTACATGAGCGTTGTCCGTCAGACTAGcaagttagcaagctaatgttagctgtagctaacgttagcattattTGAACTTGCTTGAAATTGCTTGACTTGCTGAGTATCTAGCTACAGAATGTAGCTGAGGTTACGAGACTGCATTCGTGTTATACAGTGTTTACTACAAGTAGCTCGTCAGTTGGGGGTGACCTTAAGAATGTGAAGCACAATGGCCAACTTTGAAGCTTACCAGCAGTATCAGAGaattgaggactttgaggaggaCTCACCACCAGGGGAGGAGGATTTACTGGTGCATGTGCCTGAAGGCCTGAAAGACTCATGGCACCATATCAAGAACCTGGATAACTTCTTCAAAAGGATCTATCATTTCCATCAAAAGAATGGCTTCGCTTGTATGATGATGTCAGAGTTCTTTGAACTTGTTcagttgttgtttgttgtcacGTTCACGACGTTCCTTGTCAACTGTGTGGAGTATGACATCCTGTTTGCCAATCGAGCGGTCAACCACACTGGGCCGGGCCATAACCCCTTGGACAGGAACAAGGTCACTCTTCCAGATGCCATCCTGCCTAGTCAGCAGTGTACTCAGAGGATTCAGGAGAACAGTTGGATTATATTCCTTCTCATCATGGCAGCCATCTTCTGGATTTATCGACTTGTTAAAGTATTTTGCAATGTTCTGAGCTACTGGGAGATCAGGCAGTTCTACATCAAAGCACTGAAGATCCGAATGGATGAACTTTGCAACTTCACATGGCAGGAAGTCCAGGACCGGCTCATCAGCCTGCAACGAGAACAGCAAATGTGCATACACAAGAAAGAGCTGACAGAACTTGACATCTATCACCGCATCCTTCGATTCAAGAACTACATGGTGGCCATGATAAACAAATCACTGCTGCCAGTGCAGCTGCAGCTCCCCCTGCTGGGCAATGTGGTGTTCCTCACGCAGGGCCTCAAGTACAACTTTGAGCTTATTCTCTTCTGGGGTCCTGGCTCCCTGTTTCAGAATAAGTGGAACCTTCACCCCAAGTACAAGCGGAATGGAAACCGCCTAGAGCTCGCACAGCAGCTTAGTAGAGTCATCCTGCTGATGGGTTTGGCCAATTTACTGCTATGTCCCTTCATCCTGGTGTGGCAGGTGCTCTACGCTTTCTTTAGCTATACAGAAGTCATTCGCAGAGAACCTGGAAGCCTGGGCGCACGGCGCTGGTCCCTGTATGGTCGCTTATACCTGCGACACTTCAATGAGCTGGACCATGAGCTGCATGGACGTTTAGGCCGTGGCTACAAACCCACTTCCAAATACATGAACTCCTTTACATCACCAGTGCTGACTGTGCTGGCTAAGAACCTTGCCTTCTTCTCAGGCTCAATTTTGGCTGTGCTCATTGCGCTGACAGTCTATGATGAGGATGTTCTGACAGTGCAGCACATTCTGACTGCCATCACTGTGCTGGGAGTGGTTATTACTATCGCCAGGTCCTTCATCCCAGATGAGCATATGGTGTGGTGTCCAGAACAGCTGCTGCAGTGCATGCTGGCACACATTCACTACATGCCAGACCACTGGAGGGGCAATGCTAACAAGAGTGAGACCCGAGACGAGGTGGCGCAGCTGTTCCAGTACAAAGCAGTGTTCATTTTGGAGGAGTTGCTCAGTCCTATTGTCACACCCTTCATTCTCATCTTCCACCTGCGGAATAAGTCTCTAGAGATCATTGACTTCTTCAGGAACTTCACTGTGGAGGTTGTTGGAGTTGGAGACATCTGTTCCTTTGCGCAGATGGACATCAGACGCCATGGAAACCCAACATGGCTGTCAGAGGGCCAGACGGAGGCCTCCATATACCAAcaagctgaaaatggcaagacAGAGTTGTCTCTTATGCATTTCACCATTAAGAACCCACGCTGGCAGCCACCTCAGGAGAGCTCAGTGTTCATCAGCCATCTGAAGGACAAAGTGCAGCATGATGCACAGGGTGGCCCCTCCACCCAGCTGCTACTCTCTGAAGCTCCTTTCTGCACCTCGCTGCAGTCCAATGAGTCTGGCACTGTGcCTGATAATCTTTTGGCCGGTGTCCTGGCTCACTCCAATCTAACTGCATCTGGATTACAAGGGCGAGACCATCGCTTCATCCCACCGAGCACCGCTGCTTCTGCCGCTGCCAGTGTCCTGGCCTCTTTCTCCACCTCCCAGCTCGCACATACCAGCCGTGGACGCTCACATGGCCTCCTGCGCTCATCCGTCCCCCCCGAGAGCACCATGTACCGCAGTGATCGCACCGTCATTGACAGTATGTCTAACAGTGACATCCGGAGCAATACACTGCACTCAGAGTTTGCCTCAGCAGAGATGAGTCTCCATGCCATCTACATGCATGAGCTCCACCAGCAGAGCTCCCACCCACAGAGGACTTCGGGGCAGTGGCAGAACCCAGTGCCAATGAGAGatctacacacaaacactgATTTCCAGGCACATAGTGGCCTTGGCTCCAGCATTTCAATGCCCACCACTGTCCACTTTGGTGGCTGGCAAgagaaggaagaagaggagaatgAAGATGATCAGGAGATTAACAGTGGATCTACTCCAAAACAGGGCACTGGGAGTAGTTGTTGAAGTGCCTTAGGTCATAAGATGTTTTAGGTCAAGCATTGATGTCCTGAAATCGTGGGGAGgaatcctttatttatttttttcagaacaAAACAGGGTGGTATTGCTTTTACAAATCTTTGTTGTGCATATTAGCATTTTGTTTGCGTCCTTTTTCCAAAATGCTCACGTAAAAAATGGAACTGCATCATAAGGGCTGATTTCAGAGTGTGCGCTGTTGCGTCCACAGCTTTAGGTTTGGAGATTTTAGGACAGCAGTTCCTCTCATTTTTGGCTTTCTACTTTTCAAAGTAAGACCATGAGGAGAAAAAAGCCTTTTCGGTCAGCATCATGTTTTAGCTTTAGGTTTATTTATTacctgtcccccccccc

Function

symbol description
atg9b Predicted to be involved in autophagy of mitochondrion; late nucleophagy; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagy and protein transport. Predicted to be located in Golgi apparatus; autophagosome membrane; and cytoplasmic vesicle membrane. Predicted to be integral component of membrane. Predicted to be active in autophagosome and phagophore assembly site. Orthologous to human ATG9B (autophagy related 9B).

NR:

description
PREDICTED: autophagy-related protein 9B

GO: NA

KEGG:

id description
K17907 ATG9; autophagy-related protein 9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816561.1 False 3357 mRNA 0.48 13 21274741 21284939
XM_039816562.1 True 3423 mRNA 0.48 14 21273384 21284939

Neighbor

gene id symbol gene type direction distance location
LOC120568841 NA coding downstream 5008 21213666 ~ 21268376 (-)
c11h1orf35 LOC104963886,LOC103374549 coding downstream 71757 21197293 ~ 21201627 (-)
wnt9a wnt9a,LOC106599874 coding downstream 122198 21133002 ~ 21151186 (-)
jmjd4 jmjd4,LOC102786139 coding downstream 219608 21051339 ~ 21053776 (-)
ccdc13 NA coding downstream 267257 21001980 ~ 21006127 (-)
asic1c asic3 coding upstream 18422 21303361 ~ 21322484 (-)
agap3 agap3,LOC102197517 coding upstream 164498 21449437 ~ 21571620 (-)
sntg1 sntg1 coding upstream 381800 21666739 ~ 21704105 (-)
ube2v2 ube2v2,ub2v2 coding upstream 482182 21767121 ~ 21783891 (-)
mcm4 mcm4 coding upstream 500360 21785299 ~ 21794603 (-)
G116651 NA non-coding downstream 63611 21208742 ~ 21209773 (-)
G116582 NA non-coding downstream 165666 21107514 ~ 21107718 (-)
G116580 NA non-coding downstream 212144 21058592 ~ 21061240 (-)
G116525 NA non-coding downstream 353668 20918969 ~ 20919716 (-)
G116508 NA non-coding downstream 445673 20827512 ~ 20827711 (-)
G116692 NA non-coding upstream 12476 21297415 ~ 21300082 (-)
G116743 NA non-coding upstream 307800 21592739 ~ 21595306 (-)
G116758 pcmtd1 non-coding upstream 373740 21658679 ~ 21660467 (-)
G116832 NA non-coding upstream 525923 21810862 ~ 21811146 (-)
G116893 LOC104955993 non-coding upstream 712855 21997794 ~ 22002858 (-)
higd1a higd1a other downstream 262808 21008048 ~ 21010576 (-)
tmie tmie,LOC102776014 other downstream 277817 20984801 ~ 20995567 (-)
xcr1b.1 NA other downstream 1477625 19793342 ~ 19795759 (-)
G116138 NA other downstream 1808004 19464700 ~ 19465380 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other downstream 2050658 19221791 ~ 19222726 (-)
G116969 NA other upstream 977059 22261998 ~ 22268559 (-)
LOC120569135 ttc39c,LOC102790819 other upstream 2060779 23345718 ~ 23361580 (-)
G117259 vps4b other upstream 2145427 23430366 ~ 23430992 (-)
LOC120568062 LOC108239646,LOC104957657,LOC101467149,LOC102793932,LOC103364894 other upstream 2183681 23468620 ~ 23491612 (-)
LOC120568990 LOC101487892,LOC104941256 other upstream 2566134 23851073 ~ 23856621 (-)

Expression


Co-expression Network