abcb8 (abcb8,LOC103375355,LOC102789860)


Basic Information

Item Value
gene id abcb8
gene name abcb8,LOC103375355,LOC102789860
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 21285152 ~ 21290501 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816563.1
GCACTCTGGGTCACTGTCAACATGGCAGCCTGCATGGTGCCTGTGGATTACCGTAGAGCTTAACGAGTAGTTTAACCTAATGTTCTTGTTATCACTGAAATAAGCATAGAACATGTTTCAGTTACTCTGCTGTAGAGCAAGCGTCACTGCTCCGGTGCGGTCATTGTCGTTACACCCGCGATGCAATAAAACAGCAGACATATGGAAACTTTCACGGTGGTACACATCTCCACGTTCTCTAGCATACAGCTCCTCACAGCAGCCTGGAAATGCCGTCAGTCGTATTTGGAGCCTCACTCAGAGAGCTGTCCGCCACTCCACAACCCGAACGTCCAAACCAAAAGGATTGGCCCTGAAGTTCATCCTGGGACCAGCAGTACTCACTGTCTCTGCACGGCTGTTCTGCCATGCAGCTCACTGCGAGGCAGATGTGAATAACAACACCCTGGTGGAACTTGTAGCCAAAAACCCTGTCCCTGAGTTCAAATGGCATATCCTGTGGGAATTTGTCAAACCTCAGCTGTTTGCTCTTATTGGTGCTGTTGTGCTTGCTTTTGGTGCAGCTATATTGAATATCCAAATCCCCTTGATTCTTGGGGATCTGGTGAATGTTGTGGCACGTTACCTGAGAGAACAGACTGGGAATTATTTTCATGAGATGAGAGGTCCTGCACTGAAACTACTTGGACTGTATGGCATCCAAGGCCTGGTGACAAGTGGCTACATCATTCTGCTTTCAAGGGTGGGGGAGAGAGTGGCAGCAGACATGAGGAAGACCCTTTTTGCATCCTTACTGAGGCAAGATGTGGCTTTCTTTGATGCCAATAAAACTGGGCAGCTGGTGAACCGTTTGACTGCTGACATTCAGGAATTCAAGTCATCCTTTAAATTAGTCATCTCTCAGGGTCTGCGGAGTATTACACAGACAGTTGGATGTTTCGTCTCTCTCTACATCATCTCCCCCAAACTCACAGGTTTGACGGTAGTTGTCCTCCCCTGTCTGGTGGGAGCAGGGGCTCTCTTTGGCTCATTCCTCCGCAAACTATCCCGTTTGGCTCAGGACCAGGTGGCAAAGGCAACAGGCGTGGCAGATGAGGCCCTTGGCAATGTGCGGACAGTAAAAGCTTTTGCGATGGAGGAGCGGGAACTCCAGTTATATGCATATGAAGTTGACAAATCatgtgaaatgaatgaaaatcttGGTGTTGGAATTGCAGTTTTCCAAGGAATGTCAAACATTGCCCTGAACTGCATTGTCCTAGGAACTATTTTTGCTGGAGGGACTTTAATGTCTAGCAATGAAATGTCCCCTGGAGACCTCATGTCTTTCCTGGTTGCTTCTCAGACTGTTCAGAGGTCATTGGCCAGTATCTCTATCCTTTTTGGACAGATGGTTAGAGGATTAAGCTCTGGGGCCCGGGTCTTTGAATACCTAGCTTTGGTGCCTACCATTCCTCTGTCTGGAGGAGGACGCATCCCATCCAATTCTCTGACAGGAAGAGTGGATTTTATGAACATTTCATTTAGCTATCCAACGAGACCTGGCCATCAGATCTTGACAAAGTTCAACTTAACGCTGCCACCTAGTAAAACTGTTGCCATTGTCGGAGAATCTGGAGGAGGAAAGTCCACTGTGGCATCCTTACTGGAGCGTTTCTACGACCCGACCAGCGGCGTAGTAATGCTAGACGGACTTGACATTCGAACACTTGATCTGTCCTGGCTCAGGGGACAAGTCATTGGATTCATCAATCAGGAGCCAGTTTTGTTCGGATCATCTATCATGGACAACATCCGCTTTGGGAAACCTGAGGCCAcagatgctgaggtcattaacGCAGCCAAGCAAGCCAATGCTCACCTCTTCATTACAGGTTTCCCAGACGGCTATAACACTGTGGTTGGTGAGCGAGGTGCGACGTtatcaggtggccagaaacagcGCATTGCCATCGCCCGTGCCTTGATCAAGAACCCCTGCATCCTGGTGCTGGATGAAGCCACCAGCGCCCTGGATGCAGAATCAGAGCGAGTGGTGCAGGAGGCTCTGGACAGGGCCACAAGTGGTCGCACTGTGCTTATCATCGCCCACCGGCTGAGCACCATTCAAGGAGCAGACCTCATCTGTGTCATGAGCAATGGCCGCATTGTAGAGGCTGGGACTCACATGGAACTGCTGAGCAAAGGAGGACTTTACTCTGATCTGATCCGCAGGCAAAGAGCTGAGGGGCAGAAATGAACACACCAAAACTTGTCTACTGTAGATCTACACtgagtaataaataaaaataaaaaaagaaattcataGGAAAGGATTGCCTGAACTGATAAATTATGTAAAACATGTAATGTAAATCTACCAGCTCTCTGTCTAGCTTTATGACAAACTCtcatatttatgtatgtgttattGTATAAGTGG

Function

symbol description
abcb8 Predicted to enable ATP binding activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within potassium ion transport and transmembrane transport. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial ATP-gated potassium channel complex. Is expressed in female organism. Orthologous to human ABCB8 (ATP binding cassette subfamily B member 8).

NR:

description
ATP-binding cassette sub-family B member 8, mitochondrial-like isoform X2

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05655 ABCB8; ATP-binding cassette, subfamily B (MDR/TAP), member 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816563.1 True 2422 mRNA 0.48 16 21285152 21290501

Neighbor

gene id symbol gene type direction distance location
guk1a guk1,LOC107100458 coding upstream 76468 21200717 ~ 21208684 (+)
arf1 arf1 coding upstream 89395 21192298 ~ 21195757 (+)
wnt3a wnt3a coding upstream 106321 21163720 ~ 21178831 (+)
snap47 snap47 coding upstream 225402 21053381 ~ 21059750 (+)
iba57 iba57 coding upstream 233810 21048354 ~ 21051342 (+)
cdk5 cdk5,LOC106599847 coding downstream 1205 21291706 ~ 21298333 (+)
zgc:92591 LOC103479695,LOC101468538,LOC101063387,LOC100696317,LOC105935710,LOC106963471,LOC103358166 coding downstream 137518 21428019 ~ 21428679 (+)
asb10 asb10 coding downstream 144466 21434967 ~ 21439933 (+)
gbx1 gbx1 coding downstream 151259 21441760 ~ 21444125 (+)
rb1cc1 rb1cc1 coding downstream 290779 21581280 ~ 21595237 (+)
G116616 NA non-coding upstream 40759 21243641 ~ 21244393 (+)
G116583 wnt9a non-coding upstream 151140 21129608 ~ 21134012 (+)
G116538 NA non-coding upstream 254656 21021631 ~ 21030496 (+)
G116529 NA non-coding upstream 256170 20949004 ~ 21028982 (+)
G116514 NA non-coding upstream 404156 20880692 ~ 20880996 (+)
G116723 NA non-coding downstream 163829 21454330 ~ 21500394 (+)
G116746 NA non-coding downstream 323599 21614100 ~ 21662470 (+)
G116794 mapre2 non-coding downstream 543965 21834466 ~ 21838752 (+)
G116857 NA non-coding downstream 645018 21935519 ~ 22020278 (+)
LOC120568180 NA non-coding downstream 734612 22025113 ~ 22036950 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 369830 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 909519 20373227 ~ 20375633 (+)
emilin2a NA other upstream 1819771 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 2232910 19017039 ~ 19052242 (+)
LOC120568911 NA other upstream 2559705 18720365 ~ 18725447 (+)
LOC120568354 NA other downstream 580452 21870953 ~ 21897391 (+)
LOC120567968 NA other downstream 1317548 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 1351009 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 2143124 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 2302231 23592732 ~ 23685804 (+)

Expression


Co-expression Network