LOC120568842 (LOC103353955,LOC104931259)


Basic Information

Item Value
gene id LOC120568842
gene name LOC103353955,LOC104931259
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 17183162 ~ 17275789 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816565.1
TCGGTTCAGGTTCAGTATTGCGGCGTTTGTCCAGCCTCCTGACGGTGCGCGACTCTCAGGGAACAGAGTGGTTTCCCTTTTTTCTGGAAAGCCCTTCACCATCAGTCTGAGAGCTGGGCTTAAGGGGGAGCAGATCTGAAGGGCCCAGTCTGGCTGTGAGAGACATCCTTAGACTTTAACATATGGCGCTGTAGTATAAGCACACTTTTGTGGATTGTGGAAGGGACCGAATTTGGAAGGGACCGAATTTTATCAAAAGTCGCCCGTTTTCTGTACAGGCGTTCATCATGGAGATGCAAAGGTGGACCACCAGGTGGAAAACGAAAAGGTGGCTATGGGATTCAACGCTAGTCGCTGTGGTCACATTAAGTTTAATTCTACAAGCTGCCAATGTCAGAGCAGCTGAACCAGTAGATGTACTAAAGGCTCTAGACTTCCAGAGCTCTCCTGAAGGAGTACAGAAAACAACAGGCTTCTGCACAGTCCGGAGAGGATCCAAACCCAACATCGCTTACAGAGTGGGAAAACAGGCTCAGATCAGCGCTCCAACCAAACAGCTCTTCCCAGGAGGAGATTTCCCAGAAGATTTCTCCATCCTGTTCACCATCAAGCCCAAGGCTGGCCTCCAGTCCTTCCTACTGTCCATATACAACCAGCAAGGCATCCAGCAGCTTGGCGTAGAGGTGGGCCGTGCCCCCGTCTTCCTGTATGAGGACCAGCATGGCAAGCCTGCCCCGGAGGGGTACCCCCTGTTCCGCTCCATCAACCTTGCTGACGGCAAATGGCATCGTGTAGCTATCAGCGTAGAGAAGAAGAGTGTCACCATCATCGTGGACTGTAAGAAGAAGGTGACCAGGCCCCTTGGCAGAAGCGACCAGGCCGTCATCAACACAGAAGGCATAACTGTCTTTGGCACCAGAATCTTGGATGAGGAAGTCTTTGAGgGTGACATCCAGCAACTGCTGATAGTGGCAGACCCCAGGGCAGCCTATGACTACTGTGAACACTACAGCCCTGACTGTGAAACCCCCAACCACCACGACACCCCCCAGGCTCAGCAACCTGAGGACGAGTACACTAACTATGAATATGGTGAATATGGTGACTACAATGAAGGAGAGTTAACCACTGATGCTCCCCCAACTGAAGGAGCCAAGACTGAGACAAATGTGGGTGGAGACTACTACACGGGTGAGTATGACTACACCACAGTGGacgaatcgattttttttttttttttcctatttgtACCATggaacccccccccaccccccagcaacacCCTGGATTGATCCCAGAGCTATGAAGGGGAAATAGTGGATGATTACATCACCGGTGTGGAACAGGTCGGGGTGGACCCCACCGTTGCTGTGGAAACCGCTGCCCCAGTGGACACCCTAGAGAAGGTGGATCCTGCCACAGACGTGTATGAGTTTAAGGAATACGACCTAAAGGAATATGACAACAAAGAGATTGTAGAGAAGCCATACGAATATGGTGATTATGGCGATTATGGCCCCACTGAAGCCAAGCCTACATCTGCAACATATGAGGACGAGTTTGGTCCTGGAGTTCCAGCAGAGACGGACATCCGAGAAAGCAATGTGGGTGGAGGTCAAAGCTACCtgggagaaaaaggagagaagggTGAACCTGCTGTCATTGAGCCAgggatGCTTATAGAAGGACCCCAAGGAGCCCCCGGCCAAGCCGGTCTTCCTGGTACCCCAGGATTACAGGGTCCTCCAGGTCCCCACGGAGATCACGGTGAGAGGGGTCCTCCAGGGCGTCCTGGTCTTCCTGGTTCAGACGGTATTCCTGGGCCTCCAGGTACCATTCTGATGCTTCCATTCCGTGCGGGCGGTGAGTCACACAAGGGACCTGTGGTTTCAGCTCAAGAAGCTCAGGCTCAGGCCATCCTTGCTCAGGCTAGGCTGACCATGAGAGGTCCTCCAGGGCCAGTGGGCATGGCAGGAAGATCTGGTCCTGTGggaGGTCCTGGAGCTCCTGGACTTAAAGGTGACAGTGGTGACTCCGGACCACAGGGACCCAGAGGTCTTCAGGGTGCAACTGGTCCACCAGGGAAAGCAGGAAAGAGGGGTCGTAATGGAGCCGATGGTGCTCGAGGAATGCCAGGAGAGGCAGGGACCAAGGGTGACAGAGGTTTTGACGGCCTCCCTGGTCTTCCTGGAGAAAAAGGGCATAGAGGAGAACATGGTTCTACAGGACCTCCAGGACCTCCAGGAGAGGATGGCCCCAGAGGTGAAGATGGCCAGGTTGGACAGAGAGGTGTGGCTGGAGACAGTGGTCCTCGAGGTTTGCTTGGCCCCAGAGGGTCTCCAGGTACTGGTGGACAGCGTGGTCTTCCTGGAATTGATGGGCAAGCTGGTCCCAAAGGAAACATGGGTCCACAAGGAGAGCCGGGACCTCCTGGGCAACAGGGTATGCCTGGTCCACATGGTCTTGTTGGTCCTCAAGGTCCAATCGGGCCTCCTGGTGAAAAAGGACCTCAAGGGAAACAAGGTTTGGCTGGCCTTTCTGGTGCTGATGGCCCTCCTGGTCACCCAGGAAAAGAAGGTCCTCCAGGCGAGAAAGGAGCAGCTGGTCTTGCTGGTCCTATGGGATCCATTGGCTACCCTGGACCTCGTGGTGTGAAAGGTGCTGAGGGAATTAGAGGCCTTAAAGGTGGCAAAGGAGAAAAGGGAGAGGATGGATTCCCTGGCTTCAAAGGTGACATGGGTCTCAAGGGTGACAAGGGTGAGGGTGGTGTATTAGGACCCAGAGGAGAAGACGGTCCCGAGGGTCCCAAGGGCAAGTCAGGACCCAATGGAGAAGCTGGTCCCTTGGGACTAGCTGGAGAGAAGGGAAAACTTGGAGTCCCTGGATTGCCTGGGTACCCTGGTCGACAAGGCTCCAAGGGCTCCAATGGCTTCCCTGGATTCCCCGGGGCGAATGGCGAGAAGGGAGCAAGGGGAATCGCTGGCAAAGCAGGCCCTAGAGGTCAACGTGGCCCAACGGGTCCACGTGGTGGGCGTGGTGCTAGAGGACCAACAGGAGCGCCAGGTGCAAAGGGCACCTCAGGCAACGATGGACCAGGGGGCCCACCAGGAGAGAGGgGACCTCAAGGACCACAGGGACCCGTCGGTTTCCCCGGACCTAAAGGACCCAATGGCCCCCCAGGAAAAGATGGGCTGCCTGGTCATCctggacagagaggagagacgGGCTTCCAAGGAAAGACAGGACCTCCAGGACCTGGAGGGGTGGTTGGACCACAGGGCCCAACTGGAGAGACAGGACCTAGCGGAGAGCGAGGACACCCAGGTTCGCCTGGTCCACCTGGTGAGCAAGGTCTACCTGGAGCTGCTGGAAAAGAGGGTGGAAAGGGTGATCCAGGTTCTCAGGGTCCTAGTGGCAAGGCAGGACCTGCCGGCCTACGGGGCTTCCAGGGTGCAAGAGGTCTTCCAGGGGCCATGGGTCCAGCTGGCTTAAAGGGAGGAGAAGGGCCTCAGGGTCCCCCCGGCCCCATCGGTTCTCCTGGAGAGAGAGGTGCTGCTGGCCCTGGAGGTCCCATTGGTCTAGCAGGACGCAATGGACCCCAAGGACCACCCGGCCCTGCTGGAGAAAAGGGCGGCCCTGGAGAGAAAGGTCCCATGGGCCCTGCTGGCCGTGATGGCATTCAAGGTCCTGTTGGTCTTCCTGGTCCGGCTGGTCCTCAGGGTCCCCCTGGAGAGGACGGTGACAAGGGAGAAGTTGGCGGACCTGGACAGAAGGGAAGCAAAGGAGACAAGGGTGAACTTGGTCCACCAGGCCCAAGCGGTCTTCAGGGTGTGGTCGGAGCTCCCGGTCCAGCTGGCAGTGATGGTGAGTCTGGACCGAGAGGACAGCAGGGTATGTTTGGCCAGAAAGGAGACGAAGGAGCCAGAGGATTCCCCGGTCTACCAGGACCCATCGGACTACAGGGTTTGCCCGGCCCTCCTGGTGAGAAGGGAGAGAATGGAGATGTTGGACCAATGGGTCCACCTGGTCCTCCTGGCCCCAGAGGTCCTCAGGGTTCCAGCGGTGCCAACGGAGCTCAAGGTCCTCCCGGTGGTATTGGTGCAATGGGAGGTGTTGGTGAGAAGGGAGAAACCGGTGAAGCTGGCAACCCAGGATCAGTTGGAGAGCCTGGGATTGCAGGACCCAGAGGAGAGACTGGTGAGAAGGGAGAAACCGGGCCACCCGGAGCTGCTGGACCCGCCGGCCCCCGTGGACCCTCTGGAGATGACGGTCCCAAGGGCAACCCCGGTCCTGTCGGCTTCCCAGGAGACCCTGGTCCCCCTGGTGAGCCTGGTGCTGCTGGTCTTGACGGTTTACCAGGTGACAAAGGAGACGATGGAGAGGCCGGACAACCAGGCCCTTCAGGTCCATCTGGTGAGGCTGGAGTACCAGGACCTCCTGGCAAAAGGGGAACTGTTGGACCAGCAGGTCAGGAGGGCAGACAAGGAGAAAAGGGATCCAAGGGCGAAGCTGGAGCCGAGGGCCCTGTTGGGAAAACTGGACCTGTGGGACCTCAGGGGACTGCTGGAAAGTCTGGTCCCGAGGGACTGCGTGGAATTCCTGGCCCTGTTgGTGAGCAAGGACTGCCTGGTGCTTCTGGTCAAGATGGCCCACCAGGACCTATGGGACCCCCTGGACTTCTTGGTATGAAAGGTGACTCTGgaggaaagggagagaagGGTCATCCAGGTCTTATCGGTCTGATTGGTCCTCCTGGTGAGTCTGGAGAGAAGGGAGACAGAGGATTGCCTGGACCTCAGGGTACTGCAGGTGGCAAGGGTGATGCTGGTGGTACTGGTCCCCAAGGTCCTCTCGGTCCTCCTGGTCCCCCTGGTCTTTCTGGCCCTCTAGGACAGAAGGGTTCCAAGGGATCAACCGGTTCAGCAGGTCAGAAGGGAGACACTGGACTGATTGGACCACCTGGACCACCTGGTCCACCCGGTGACATCATCCAGCCACTGCCCATCCAGCAGGCTGCCAAAAGGACCAGACGGCAAGCTGAGAAGCAGGGAGACAAGGCATTGGCAGACAAGGCATTGGCAGACTATGGCGTAGATGGCCTCGGTATGGAGGGAATGGAGGATGTCTTTGGATCCCTCAACAACCTCAAACAGGACATTGAACGCATGAAGTTTCCCATGGGCACCCAAGACAATCCTGCCAGGACCTGCAACGACCTGCACCTCAGCCAGCCTGACTACCCAGATGgTGAATACTGGATTGATCCAAACCAGGGCTGCATAGGAGACTCCATCAAAGTGTTCTGTAACTTCACAGCAGGCGGAGAAACGTGTATCTTCCCAGATAAGAAATCTGTAGGAGTTAGAATATCCAACTGGCCCAAGGAGTCTCCAGGTTCATGGTTCAGTGAATTTAAACGTGGCAAAATTTTGAGCTACGTTGACATGGCAGAAAACACCATCAACACAGTGCAGATGACCTTCCTGAAGCTGCTGAGCTCCTCAGCACGGCAGAACTTCACCTACATTTGCCATCAGTCCGTGGCCTGGTACGATGCCAAGGCCGACAACTACGACAAGGCGCTGCGCTTCCTGGGCTCCAACGATGAGGAGATGTCTTACGACAATAATCCCTTCATCAAGCCGCTGATGGACAACTGCTCGCTGAAGCAGGGCTATTCAAAGACTGTGATGGAGATCAACACTCCCCGCATCGACCAGTTGCCCATCATTGAcgtcatgctgaatgactttgGGGAATCCAACCAGAGGTTTGGCTTTGAGGTGGGCCCTGTCTGTTTCCTCGGCTAGACACACACCTACTCCCCGCTGAAGGACAGGGTCAGAGGGTACATATTAACACCCACATGCTGAGATCCGACAACCTTTACCTTCTCTCCCTGTGAAGCAAAAAaacctgtgttttcttttgttgccCGAGAAGATCCACTCAAGCCCGGAGAAGAAGAGTGCCCCTAGGCCCTGTCATGAAAGCGCTGACCAGGGGAAACTACTCCTCGCCCTTGTAGGGCCAGAATCACATGACTTTAACTTACATGTTGTAATGGGAGTGACATCAGGAAAAGGACATTTGATGCCGTGGCGTACAGTGGCGCACCTTCGGCAACAGAGAGAGGATCCACTCACCCCAAGCCCCATCCTCCCTTGTCCTCCCCCTCCCACCACGCCTCCCTCTCTGGATGCTCCAGGTGCTGCTCTGAATAAAACCACAGAGGTGCTTTTGTGCAGAATCACAAAACACTCAAGGTGCTACAAAAAGTGCTTTTtgataaaactgtaattattattattattattgtgtacaATATTGTGCCTTTCTGAATCCACCCTAAAATCTTGCATGTTCCCCAGCTCTTAAGtttaaataagtatttggtAAACAATATAGAAATAAATCTAATGAATATAGTTGATGTGTGTTGAAAACAAATTTGCTAAAAAGAATATCTATTGAAAACATTCCAATTTGTAAAGTACAAAATAATCCTTTTGTAAATAATATAACTTTCAATATTTGATTTTTATGAGAGCTAACACAACTGGATCATAAAACACAACTCTAAAAGCATTCTGTCTTTTTTCATGACAATGACACCAGTTGGTATGTCCATCGGGATATTAAGCCATAATAAAATGATATagtaatataaatattttaagaaaGAGCTTATTCTTCCAAACCTTATTCACCCAGATGTTATATTGTACCTcagtttcttttaaaaaatgtggACATATTTGGCTCTTCACCCGTGTTTATATATTGATAACACAATCAAGTTTAAACATTATTTGTGGTGGCTAACTTACAATTTATTTTCTGTGGAGTTAAATTTGTCCAATAGTGTCCAAAAGCTCTGTTGATTTTCTTATTTGTAATGAACAAAATGTTTCATGTGCCTTGAATTgttcattcaaaaatattaaaactGGATTCTGAAAAATGCCTGTATTGGATTGTTGGCTATTTGAGTGCAGAAACGATTAATGTTCTTTTTGTGATTCTGCGCTGCCCTATACATATCTCCTTCCTTCGCCATTTGGAGGATTAGTGGCTCCAAGTGTTGCCGTTCATGTGATTGATTCTGCTGAGCCCAGGTGCTGTGAtctctttcactttctttctctGAATCAAATTTGACTTTGATCATGATATGTTTGCATCTCCACCTCTCTAGCTTAAAGCTATGATAGCATAGACTTCGGAGCCGCTTTCAAACCtgtgtaattacagtatgtttACAACCtatgtacaaatgaaataaatgtttggTGCTTTGCCAAATGCACATTGCAA

Function

NR:

description
PREDICTED: collagen alpha-1(XI) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816565.1 True 7317 mRNA 0.53 67 17183162 17275789

Neighbor

gene id symbol gene type direction distance location
LOC120569119 LOC101466820,LOC102797643,LOC103353954,LOC100700019 coding downstream 6751 17165891 ~ 17176411 (-)
LOC120567671 lrrc30,LOC104932041,LOC103353948 coding downstream 160769 17020735 ~ 17022393 (-)
LOC120568369 ptprm,LOC102799796 coding downstream 167536 16847810 ~ 17015626 (-)
LOC120567917 tmem200c,LOC104967041 coding downstream 363128 16814692 ~ 16820034 (-)
LOC120568957 LOC103353943 coding downstream 428396 16751993 ~ 16754766 (-)
LOC120567855 NA coding upstream 21266 17297055 ~ 17298924 (-)
LOC120569062 LOC103353959 coding upstream 216498 17492287 ~ 17542090 (-)
ndc1 ndc1 coding upstream 280191 17555980 ~ 17564537 (-)
zgc:113691 LOC103353967,LOC104931261,LOC102192286 coding upstream 288922 17564711 ~ 17567046 (-)
yipf1 yipf1 coding upstream 291563 17567352 ~ 17571388 (-)
G115435 NA non-coding downstream 18467 17164369 ~ 17164695 (-)
G115434 LOC103353952,LOC100690840 non-coding downstream 41945 17137754 ~ 17141217 (-)
G115433 abca4,LOC108232920,LOC100690840,LOC102789304,LOC102216210,LOC101466350 non-coding downstream 47349 17133873 ~ 17135813 (-)
G115430 LOC102789304,LOC101466350,LOC102216210,LOC102305671,LOC100690840 non-coding downstream 60104 17122722 ~ 17123058 (-)
G115429 NA non-coding downstream 62116 17119921 ~ 17121046 (-)
G115458 NA non-coding upstream 26475 17302264 ~ 17302558 (-)
LOC120568661 NA non-coding upstream 80562 17356351 ~ 17357209 (-)
G115563 dcaf8 non-coding upstream 272431 17548220 ~ 17552950 (-)
G115568 NA non-coding upstream 297108 17572897 ~ 17573129 (-)
G115570 lrrc42 non-coding upstream 297674 17573463 ~ 17574125 (-)
ly97.3 NA other downstream 74258 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other downstream 138100 17043126 ~ 17045062 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 371244 16756331 ~ 16811918 (-)
G115312 ralbp1,LOC102778314 other downstream 543350 16637108 ~ 16639812 (-)
LOC120568735 LOC103355759,LOC101465864,LOC100696456,LOC102781658,LOC102293165 other downstream 847206 16330952 ~ 16335956 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other upstream 777195 18052984 ~ 18058159 (-)
sppl2 sppl2b other upstream 1204881 18480670 ~ 18494488 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 1427275 18703064 ~ 18720587 (-)
G115941 NA other upstream 1569116 18844905 ~ 18846277 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other upstream 1656185 18931974 ~ 18935491 (-)

Expression


Co-expression Network