exosc4 (exosc4)


Basic Information

Item Value
gene id exosc4
gene name exosc4
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 22201552 ~ 22204193 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816586.1
GGTAATGTAGTAGAGCGGCGGACACGTGGGTCATTGCGTTGCTGTTCATTCGAAGTTTGCGGAAACATGGCGGGCCTGGAGCTGTTGTCCGACCAGGGATACCGTTTAGATGGAAGAAAAGCCACCGAGCTGCGGAAGGTTCAGGCCCGAATGGGTGTGTTCGCTCAGGCGGACGGCTCTGCGTATTTAGAGCAGGGAAACACGAAAGCTCTGGCTGTGGTTTACGGTCCGCATGAAATACGAGGTGCACGCAGCCGAATTCGTCATGATCGAGCAGTTATCAACTGTCAGTACAGCATGGCCACATTCAGCacagcagagaggaagaggaggccacACGGAGACCGCAAGTCAACTGAGATGAGCCTCCACCTCAAGCAGACGTTTGAAGCTGCTGTGATGACCCAGCTCTACCCACGCTCTCAGATAGACATCTATGTCAAGATTCTGCAGTCAGACGGAGGTAACTACAGCGTGTGTGTAAATGCTGCCACTCTGGCGGTGATTGATGCCGGCATCCCCATGCGGGACTACGTGTGTGCCTGCACGGTCGGGTTTGTAGATGAGACGCCCCTCGCTGACCTTTGCTATGCAGAGGAAAGTGGAGGAGTGAGTTCTCTGGCCTTAGCACTGCTGCCCCGGGGCGGACAGATCGCTCTGCTGCAGATGGACGCCAGACTACATCAGGATCACTTAGAGTCTCTGATCGAAGCCGCCATGACAGCTTGTAAAGGGGTGAGCAAGGTGCTGGATGAAGTGGTGCGACAACATCTCCAAGAAGTTTCTGTGCTCTCTGGAGAGTGATGCAGGGAGGAGGGGTGAACATCTAGACTAGTTTTGGTTGCAGACTGGAATGGAGAGAAATGATGGGAGAGTCTTGGgagtgaatgttttttttttttttctagtatTCATGGCAATTATACTTTTGTtcagtgtatgtgtggtgaAGCTATAAATATGTCAACTCTGCATCATTTCTGTGTTGCTTGTTCATTTGTGTGGTGTTGCatttaagtattaaaaggtgCAATCCTCAACCTTAATGCAAACATAATGGTAGCCACTAGCCactataaaagaaaaatacaaaataggcCTATAACAAAAAATATGGAGTTATTAATGTTTTAGAGGCTGTTAAATGTTTGTGTACATCAGCATTGTTTGTAAACTAATAAAGTGGATATATCCATAA

Function

symbol description
exosc4 Predicted to enable exonuclease activity. Predicted to be involved in RNA metabolic process. Predicted to be part of cytoplasmic exosome (RNase complex) and nuclear exosome (RNase complex). Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; immature eye; midbrain; pectoral fin bud; and segmental plate. Orthologous to human EXOSC4 (exosome component 4).

NR:

description
exosome complex component RRP41

GO: NA

KEGG:

id description
K11600 RRP41, EXOSC4, SKI6; exosome complex component RRP41

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816586.1 True 1198 mRNA 0.48 3 22201552 22204193

Neighbor

gene id symbol gene type direction distance location
prkacbb LOC102779523,LOC103396312,LOC107383895,LOC108239664,LOC105935432,LOC104931534,LOC100699977,LOC101066292 coding upstream 904 22189167 ~ 22200648 (+)
LOC120568357 LOC103364114 coding upstream 49939 22066014 ~ 22151613 (+)
znf830 znf830 coding upstream 184245 22015922 ~ 22017307 (+)
LOC120568175 LOC104935914,LOC104955993,LOC103364110,LOC100699175,LOC102214823 coding upstream 198688 21995600 ~ 22002864 (+)
LOC120568173 LOC103396305,LOC101065160,LOC103364109,LOC100698908,LOC104955975 coding upstream 214070 21983014 ~ 21987482 (+)
gpaa1 NA coding downstream 302 22204495 ~ 22210738 (+)
LOC120568851 NA coding downstream 16515 22220708 ~ 22226126 (+)
LOC120568797 NA coding downstream 53015 22257208 ~ 22268559 (+)
ripk1l LOC103479635 coding downstream 283644 22487837 ~ 22495325 (+)
mep1bb mep1b coding downstream 312085 22516278 ~ 22524115 (+)
LOC120568180 NA non-coding upstream 164602 22025113 ~ 22036950 (+)
G116857 NA non-coding upstream 181274 21935519 ~ 22020278 (+)
G116794 mapre2 non-coding upstream 362800 21834466 ~ 21838752 (+)
G116746 NA non-coding upstream 539082 21614100 ~ 21662470 (+)
G116723 NA non-coding upstream 701158 21454330 ~ 21500394 (+)
LOC120568856 NA non-coding downstream 30626 22234819 ~ 22238505 (+)
LOC120568744 NA non-coding downstream 103574 22307767 ~ 22314947 (+)
G116978 NA non-coding downstream 261142 22465335 ~ 22472840 (+)
G117077 NA non-coding downstream 542927 22747120 ~ 22747732 (+)
G117082 dsp non-coding downstream 548059 22752252 ~ 22754490 (+)
LOC120568354 NA other upstream 304161 21870953 ~ 21897391 (+)
LOC120568904 crhr2,LOC101476678,LOC102776588 other upstream 1286230 20882617 ~ 20915322 (+)
LOC120567833 gbg5 other upstream 1825919 20373227 ~ 20375633 (+)
emilin2a NA other upstream 2736171 19447011 ~ 19465381 (+)
LOC120568770 NA other upstream 3149310 19017039 ~ 19052242 (+)
LOC120567968 NA other downstream 403856 22608049 ~ 22620131 (+)
LOC120568311 LOC103368946,LOC103142996,LOC106925933,LOC104929332 other downstream 437317 22641510 ~ 22681293 (+)
kdsr kdsr,LOC102792240 other downstream 1229432 23433625 ~ 23440843 (+)
LOC120567964 dpp6,LOC100710983 other downstream 1388539 23592732 ~ 23685804 (+)
G117319 LOC101487892,LOC104941256 other downstream 1646686 23850879 ~ 23855157 (+)

Expression


Co-expression Network