LOC120568865 (tpm4,LOC107383605,LOC102218802,LOC103146061,LOC103479776,LOC100703626,LOC102199996,LOC106537044,LOC101474423,LOC102789012,LOC106914771,LOC108232925,LOC106936184)


Basic Information

Item Value
gene id LOC120568865
gene name tpm4,LOC107383605,LOC102218802,LOC103146061,LOC103479776,LOC100703626,LOC102199996,LOC106537044,LOC101474423,LOC102789012,LOC106914771,LOC108232925,LOC106936184
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 18060695 ~ 18070437 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039816599.1
tttttttcctctcattcCAACCCCGCACGTCCCTGACTTCCtgcctgagaaaaaaaaaagttttcctcATTATCGTTTTAAGGATACAGCGAATCGATCTAGACCGCTAGctagatttttttggggctcCTTCTTAGCTTTTTTTGGAGAAAACAAACTAATCGAGACTATGGAGACGGTAAAGAAGAAAATCCAAACTCTCCAGCTACATGTTGATGAGGCAGAAGATCGCGCACTGGCAGTACAAAGGGAGTTGGACACTGAACGGGAACTGCGCGACAAAgcgGAGGGCGATGTGGCATCTTTGAACCGCAGGATCCAGCTGGTGGAGGAGGAGTTGGACCGTGCTCAGGAGAGACTGGCTACAGCCCTTCAGAAACTGGAGGAGGCTGAGAAGGCTGCAGATGAGAGTGAAAGAGGCATGAAGGTGATTGAGAACAGAGCCATGAAAGACGAGGAGAAGATGGAGATCCAGGAAATGCAACTCAAAGAAGCCAAACACATCGCTGAGGAGGCAGACCGCAAATACGAGGAGGTTGCCCGCAAACTGGTAATCCTTGAGGGTGAGCtggagagagcagaagagagggCAGAAATTGCAGAACTTAAGTGTGCTGACCTGGAAGAAGAGCTGAAGAACGTCACCAACAACCTCAAGTCGCTAGAGGCTCAGTCTGATAAGTACTCTGAGAAAGAAGACAAGTATGAGGAAGAGATTAAAGTCCTGAATGACAGACTTAAGGAGGCGGAGACCCGTGCAGAATTCGCAGAGAGGTCCGTGGCTAAGCTGGAAAAGACCATCGATGACTTAGAAGAGAACCTATCGAAAGAAAAAGAGCAAAACGTAGGAATGCACCAAGTCCTGGACCAAACACTGCAGGAGCTCAATAGCTTGTAAAATTCCATGAagatcaaacaaataaaaaaaaaacaaattttttttgttttgtgaaagATTTTCTACATGCCATCCATTCTCTGTAATTTCACTATTATTCCTAAACACGTACcccttttatatatttatggttctttttgtttcttttcccttttattttttttttaattttatttttttttttaatggttttggGACCATATGATAATCAGTTTTGGTGCTAGAAATTGTGTTGTAGACCAAACTCTGAGCACAAATTAAACTGAACATGATGATAAAGTGA
>XM_039816600.1
ttttttttcctctcattcCAACCCCGCACGTCCCTGACTTCCtgcctgagaaaaaaaaaagttttcctcATTATCGTTTTAAGGATACAGCGAATCGATCTAGACCGCTAGctagatttttttggggctcCTTCTTAGCTTTTTTTGGAGAAAACAAACTAATCGAGACTATGGAGACGGTAAAGAAGAAAATCCAAACTCTCCAGCTACATGTTGATGAGGCAGAAGATCGCGCACTGGCAGTACAAAGGGAGTTGGACACTGAACGGGAACTGCGCGACAAAgcgGAGGGCGATGTGGCATCTTTGAACCGCAGGATCCAGCTGGTGGAGGAGGAGTTGGACCGTGCTCAGGAGAGACTGGCTACAGCCCTTCAGAAACTGGAGGAGGCTGAGAAGGCTGCAGATGAGAGTGAAAGAGGCATGAAGGTGATTGAGAACAGAGCCATGAAAGACGAGGAGAAGATGGAGATCCAGGAAATGCAACTCAAAGAAGCCAAACACATCGCTGAGGAGGCAGACCGCAAATACGAGGAGGTTGCCCGCAAACTGGTAATCCTTGAGGGTGAGCtggagagagcagaagagagggCAGAAATTGCAGAACTTAAGTGTGCTGACCTGGAAGAAGAGCTGAAGAACGTCACCAACAACCTCAAGTCGCTAGAGGCTCAGTCTGATAAGTACTCTGAGAAAGAAGACAAGTATGAGGAAGAGATTAAAGTCCTGAATGACAGACTTAAGGAGGCGGAGACCCGTGCAGAATTCGCAGAGAGGTCCGTGGCTAAGCTGGAAAAGACCATCGATGACTTAGAAGACGAACTGTACACTCAGAAGCTGAAATACAAGGCTATCAGCGAGGAGCTGGATCATGCCCTCAATGATATGAACACCATGTAGACCTTGCATTTagctttcactttccctttgtCTCTCCTTGCCTGATTGGAAGCTCTTCTTTTCTCCCTTTGTTATCACTGCCCCTTGCTCCTTTTCTGTTAAACAAAAGCTCAATAAAgatatttttctctttta
>XM_039816601.1
TAAATCACATAGAGCTCCACCGACTCTCAGTTTGCATCCTCCTCTCTGCTCACTCGCTCTGagctccctctgtctctcctcctttctGCATCTGCTGGTTACTCTCCCCGTCAACCTTGTGAGGGTGTCTTCCCCTGATCATCTGCAACAGTTTTTCAACTAAAGAAATACaaactttttttctccaaagcTTGCGAGACACTGAGACCCAACTGTCACCATGGAGGCCATCAAGAAGAAGATGCAGATGCTGAAGTTGGACAAGGAGAACGCCATCGACAGGGCAGAACAGGCCGAGTCCGACAAGAAGGCAGCCGAGGATAAATGCAAACTGCTGGAGGATGAGCTGCTCGCTCTGCAGAAGAAACTGAAGGGAACAGAGGATGAGCTTGACAAGTACTCGGAGGCCCTGAAGGATGCTCAGGAGAAACTGGAACTGTCGGAGAAGAAGGCCGCAGATgcgGAGGGCGATGTGGCATCTTTGAACCGCAGGATCCAGCTGGTGGAGGAGGAGTTGGACCGTGCTCAGGAGAGACTGGCTACAGCCCTTCAGAAACTGGAGGAGGCTGAGAAGGCTGCAGATGAGAGTGAAAGAGGCATGAAGGTGATTGAGAACAGAGCCATGAAAGACGAGGAGAAGATGGAGATCCAGGAAATGCAACTCAAAGAAGCCAAACACATCGCTGAGGAGGCAGACCGCAAATACGAGGAGGTTGCCCGCAAACTGGTAATCCTTGAGGGTGAGCtggagagagcagaagagagggCAGAAATTGCAGAACTTAAGTGTGCTGACCTGGAAGAAGAGCTGAAGAACGTCACCAACAACCTCAAGTCGCTAGAGGCTCAGTCTGATAAGTACTCTGAGAAAGAAGACAAGTATGAGGAAGAGATTAAAGTCCTGAATGACAGACTTAAGGAGGCGGAGACCCGTGCAGAATTCGCAGAGAGGTCCGTGGCTAAGCTGGAAAAGACCATCGATGACTTAGAAGAGAACCTATCGAAAGAAAAAGAGCAAAACGTAGGAATGCACCAAGTCCTGGACCAAACACTGCAGGAGCTCAATAGCTTGTAAAATTCCATGAagatcaaacaaataaaaaaaaaacaaattttttttgttttgtgaaagATTTTCTACATGCCATCCATTCTCTGTAATTTCACTATTATTCCTAAACACGTACcccttttatatatttatggttctttttgtttcttttcccttttattttttttttaattttatttttttttttaatggttttggGACCATATGATAATCAGTTTTGGTGCTAGAAATTGTGTTGTAGACCAAACTCTGAGCACAAATTAAACTGAACATGATGATAAAGTGA
>XM_039816602.1
AGTTTAAATCACATAGAGCTCCACCGACTCTCAGTTTGCATCCTCCTCTCTGCTCACTCGCTCTGagctccctctgtctctcctcctttctGCATCTGCTGGTTACTCTCCCCGTCAACCTTGTGAGGGTGTCTTCCCCTGATCATCTGCAACAGTTTTTCAACTAAAGAAATACaaactttttttctccaaagcTTGCGAGACACTGAGACCCAACTGTCACCATGGAGGCCATCAAGAAGAAGATGCAGATGCTGAAGTTGGACAAGGAGAACGCCATCGACAGGGCAGAACAGGCCGAGTCCGACAAGAAGGCAGCCGAGGATAAATGCAAACTGCTGGAGGATGAGCTGCTCGCTCTGCAGAAGAAACTGAAGGGAACAGAGGATGAGCTTGACAAGTACTCGGAGGCCCTGAAGGATGCTCAGGAGAAACTGGAACTGTCGGAGAAGAAGGCCGCAGATgcgGAGGGCGATGTGGCATCTTTGAACCGCAGGATCCAGCTGGTGGAGGAGGAGTTGGACCGTGCTCAGGAGAGACTGGCTACAGCCCTTCAGAAACTGGAGGAGGCTGAGAAGGCTGCAGATGAGAGTGAAAGAGGCATGAAGGTGATTGAGAACAGAGCCATGAAAGACGAGGAGAAGATGGAGATCCAGGAAATGCAACTCAAAGAAGCCAAACACATCGCTGAGGAGGCAGACCGCAAATACGAGGAGGTTGCCCGCAAACTGGTAATCCTTGAGGGTGAGCtggagagagcagaagagagggCAGAAATTGCAGAACTTAAGTGTGCTGACCTGGAAGAAGAGCTGAAGAACGTCACCAACAACCTCAAGTCGCTAGAGGCTCAGTCTGATAAGTACTCTGAGAAAGAAGACAAGTATGAGGAAGAGATTAAAGTCCTGAATGACAGACTTAAGGAGGCGGAGACCCGTGCAGAATTCGCAGAGAGGTCCGTGGCTAAGCTGGAAAAGACCATCGATGACTTAGAAGACGAACTGTACACTCAGAAGCTGAAATACAAGGCTATCAGCGAGGAGCTGGATCATGCCCTCAATGATATGAACACCATGTAGACCTTGCATTTagctttcactttccctttgtCTCTCCTTGCCTGATTGGAAGCTCTTCTTTTCTCCCTTTGTTATCACTGCCCCTTGCTCCTTTTCTGTTAAACAAAAGCTCAATAAAgatatttttctctttta

Function

symbol description
tpm4 Predicted to enable actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Involved in osteoblast differentiation. Located in stress fiber.

NR:

description
PREDICTED: tropomyosin alpha-4 chain isoform X1

GO: NA

KEGG:

id description
K10373 TPM1; tropomyosin 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039816599.1 False 1181 mRNA 0.43 8 18060695 18065107
XM_039816600.1 False 1034 mRNA 0.47 8 18061303 18065108
XM_039816601.1 True 1358 mRNA 0.45 9 18060695 18070433
XM_039816602.1 False 1214 mRNA 0.49 9 18061303 18070437

Neighbor

gene id symbol gene type direction distance location
ranbp3b ranbp3 coding downstream 40799 17999900 ~ 18019896 (-)
cdcp2 cdcp2,LOC103375059 coding downstream 469330 17583790 ~ 17591365 (-)
tmem59 tmem59 coding downstream 481120 17575306 ~ 17579575 (-)
yipf1 yipf1 coding downstream 489307 17567352 ~ 17571388 (-)
zgc:113691 LOC103353967,LOC104931261,LOC102192286 coding downstream 493649 17564711 ~ 17567046 (-)
LOC120568287 LOC103353056 coding upstream 80679 18151116 ~ 18170489 (-)
LOC120568289 LOC102296215,LOC102788438,LOC102202758,LOC101476248,LOC100704618 coding upstream 101212 18171649 ~ 18175326 (-)
LOC120568294 LOC104961359,LOC103353055,LOC100705071,LOC102788160 coding upstream 166353 18236790 ~ 18244258 (-)
LOC120569106 NA coding upstream 229975 18300412 ~ 18306617 (-)
phc3 NA coding upstream 438018 18508455 ~ 18521023 (-)
G115624 NA non-coding downstream 93003 17965813 ~ 17967692 (-)
G115577 NA non-coding downstream 452438 17607456 ~ 17608257 (-)
G115570 lrrc42 non-coding downstream 486570 17573463 ~ 17574125 (-)
G115568 NA non-coding downstream 487566 17572897 ~ 17573129 (-)
G115563 dcaf8 non-coding downstream 507745 17548220 ~ 17552950 (-)
G115640 NA non-coding upstream 4631 18075068 ~ 18076412 (-)
G115641 NA non-coding upstream 6103 18076540 ~ 18077059 (-)
G115644 ap1m1,LOC107750937 non-coding upstream 10761 18081198 ~ 18083844 (-)
G115691 NA non-coding upstream 162431 18232868 ~ 18234515 (-)
G115710 NA non-coding upstream 189487 18259924 ~ 18260284 (-)
LOC120568693 rab8a,LOC103479775,LOC101170877,LOC108232971,LOC106516875,LOC107687930,LOC102219409,LOC104931433,LOC104950312,LOC105022474 other downstream 2536 18052984 ~ 18058159 (-)
ly97.3 NA other downstream 951791 17039800 ~ 17108904 (-)
G115406 crygn,LOC100699485,LOC103353965,LOC103146339,LOC103479740 other downstream 1015633 17043126 ~ 17045062 (-)
epb41l3b epb41l3,LOC102298622,LOC106534525 other downstream 1248777 16756331 ~ 16811918 (-)
G115312 ralbp1,LOC102778314 other downstream 1420883 16637108 ~ 16639812 (-)
sppl2 sppl2b other upstream 410233 18480670 ~ 18494488 (-)
LOC120568909 LOC103353029,LOC104955147,LOC101484702,LOC102780695 other upstream 632627 18703064 ~ 18720587 (-)
G115941 NA other upstream 774468 18844905 ~ 18846277 (-)
LOC120568972 LOC104949378,LOC103135673,LOC106524506,LOC103479814,LOC106906961,LOC102205181 other upstream 861537 18931974 ~ 18935491 (-)
G116084 LOC104943419,LOC103361571,LOC101479291 other upstream 1151354 19221791 ~ 19222726 (-)

Expression


Co-expression Network